Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_11g0002400 | OGI:11005890 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr11:1691511-1695116 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cgttcctttcccttggcggagacgcggaggcgcagccgcgacctccaTtttcggactccGgtgctctctcctcctttgcgtcggattcaagtaaggcttgttgaGttcggtgccctatatcactcactcaatcctgggtgcgatttgatcgggttggcttccAatttgtcgatcgatcgaggtgcgatggtttcttgtttcttcttgcacttttcccctttctgatctcttctgttccttgtactacttcttagctggtgacaatttggctgcttgatttggTttcttggagagtttcaagtgaggttttgtagctagattgaattgctatgagtgcttacaGggaaaagagcggaattaacagcggcgttgGtgtcgttccatttctgctagtattactaattactgtgcaatgggcatcattagttcattgaagcttaagcataccatttcatgattcaatgtttaaataaaccactttatggataattagggtgagtaTtttgtatatatgctgttctgttcaatgcgtaaagaagaagtttggtcaagatcgaggtccggtgtgcaggcattgcacattgaccaTgccgggagaatggacattgtttctggAtttccattggattagatttcAaactttccTttccatgcggattagtgtaccgTttctgactgttctagtggcttgttgcagcgatatatcccaactggtaaacggaaactaatgtttgttcagttggcatatgatcaatgagataatacgacccgatacattgttttttcctcctgttcttcatgtgttttgagattataactcaattcagtgacatatatcaagtgttcatatcaacagtcttcttcacattgtaacatctgattccagaatgtcgagcctcgaggagccgctcggtcttggggaccttccaaagttgagtattaacagacttgaaaggttctctccaaatgcttgcagagcaagtgctgatgaccgtagcaccagcaagtaagTtttactcttgcaaaccatacagatgctagattcttcctttcctattttgttttacaccgaagattttcctttctcaccttcttttatcatcagtagaatttttactgccaaaggatgccctgAaaaaaaaaaagtaagatctgaccatctggacctactttcagttacaagcatcacaatggtggcaacaatcagacgatctttcacagcagttctcattcatggcatatgcaaggccaatatactgattcctcctgcaatggagtggatatggagttcagagctcttccacggaaggtaTtttgatcctgtgttatggaatggcttatgagtgtattcaatttcatttccTttttttagatctcttcatcagaccacctcaaatacgaggaatgaaCtgacatgtagcattatgtctgcggcaattcaacatgtcatagtcttttctatttaccttcataactgaataagtgaaaatggtggctgaaaaagtgtagtgattgtaaaatattactacaaattactcttttttctcaattgatgaataactggttttcaggttttgtgggagcttccaaggtttgtgaagatagttgaagtcggaccacgggatggtctgcaaaatgagaagagtactgtaccagcttctgtaaagattgaactgatacacaaattggtggcttctggtctatcagtagttgaagccacaagttttgtttccccaaaatgggtgccgcaggtaattacttagattaagtgaataaatgtagtatcatatattaatttaaattaacagatatttaaggaacaatgtcatgatacctcttgatttaaaatccaccTtttctagcatatgtgattgcacttacttcaaaaccggattttttttatgtggaaatcctcatcggaagttgtcactacttctctgataattatattgaactccttttactattaTttttttgtatgaccttaatttgtaaaatttgtactgttaatttgacaaatttggtatcagttaaatttcaaataactaatcttatcactcaTttcggagttcagctagctgatgcaaaggatgtccttcaagggattaggcatgtgccagatgtgcggtttcctgtgttaactcctaacctcagagtatgtccagttctgttttattttttttgggaactctatcacatagcactatatcagcaatagactatacattattgttttatgaagggctatgatctttgtgatgaatctactttgtttccacttctctagggatttgaggctgctcttgcagctggtgcaaaagaagttgcagtcttcgcatctgcctctgaatccttttctaagtcAaaccttaattgtaccatcaaggaaagccttgttcggtaccgtgatgttgtaacttctgccaagaaacatggaatgcgaatccgtgggtaagtcacataagcttgatgatctatcgagcctgaaagttaaaaagaacagacagcaatctgatctgagaatttgcataatttgattgtcataggtatgtttcatgtgtggttggttgccctgttgaaggcacaattcatccatcaaaggtagcatacgtagctaaggagctttatgacatgggttgctcggagatttcacttggagacacgattggtgttggtacaccaggtactgattttgttgcctttattgctttcagcatgccatttcctggttcatacatttttgcccgtttaaaactacttttaaagtgatgataccgattttttaaaagcattgcagtcctaatctacaaacattctgacacattacttgctaatcatataatttcaattgttcgaatttttctatatgacagtatgagccacatatctcattggcaattttctgctctcttgtcttgtttgtttcaggtagcatacttgctatgcttgaagctgtaatgtcttttgttccagtggacaagctcgccgtccaTtttcatgacacatacggccaagcccttgccaacatactggtctctctccaagtaagcaaccacacttcacatcctgccaatgccaatgaacaaaccatcttactgaaaaacagacgcaaaacaatcagaaatgctctgcttggcctaacatttccTtttgtattaccagctggggatcaacatagtggactcatcagtgtcaggactgggaggctgcccatatgcaaagggcgccaccggcaatgtcgcgacggaggacgttgtgtacatgctccatggactggggatagagaccaatgttgacctcaacaagctcatggatgctggagattacatctccaagcatctgggaaggcagtcaggctccaagaccaccactgctctccgcaagctaaccacttaagtccctgatgatcataatagggattcagaaaagaagaccgaagatacatcggttggcgtcagtttaatgtttttacacaaatcatatgtgattgtaacttgtaaaccgtctcaatttagtcccaatatgggtgaaagtaaacagaaaccatatatgtatacacacatttgtgtttaatttcttggattgaataatcaatgcccttcatac
More
|
||||||||||
| CDS seq | atgtcgagcctcgaggagccgctcggtcttggggaccttccaaagttgagtattaacagacttgaaaggttctctccaaatgcttgcagagcaagtgctgatgaccgtagcaccagcaaacgatctttcacagcagttctcattcatggcatatgcaaggccaatatactgattcctcctgcaatggagtggatatggagttcagagctcttccacggaagatctcttcatcagaccacctcaaatacgaggaatgaaCtgacatgtagcattatgtctgcggcaattcaacatgttttgtgggagcttccaaggtttgtgaagatagttgaagtcggaccacgggatggtctgcaaaatgagaagagtactgtaccagcttctgtaaagattgaactgatacacaaattggtggcttctggtctatcagtagttgaagccacaagttttgtttccccaaaatgggtgccgcagctagctgatgcaaaggatgtccttcaagggattaggcatgtgccagatgtgcggtttcctgtgttaactcctaacctcagaggatttgaggctgctcttgcagctggtgcaaaagaagttgcagtcttcgcatctgcctctgaatccttttctaagtcAaaccttaattgtaccatcaaggaaagccttgttcggtaccgtgatgttgtaacttctgccaagaaacatggaatgcgaatccgtgggtatgtttcatgtgtggttggttgccctgttgaaggcacaattcatccatcaaaggtagcatacgtagctaaggagctttatgacatgggttgctcggagatttcacttggagacacgattggtgttggtacaccaggtagcatacttgctatgcttgaagctgtaatgtcttttgttccagtggacaagctcgccgtccaTtttcatgacacatacggccaagcccttgccaacatactggtctctctccaactggggatcaacatagtggactcatcagtgtcaggactgggaggctgcccatatgcaaagggcgccaccggcaatgtcgcgacggaggacgttgtgtacatgctccatggactggggatagagaccaatgttgacctcaacaagctcatggatgctggagattacatctccaagcatctgggaaggcagtcaggctccaagaccaccactgctctccgcaagctaaccacttaa
More
|
||||||||||
| Protein seq | MSSLEEPLGLGDLPKLSINRLERFSPNACRASADDRSTSKRSFTAVLIHGICKANILIPPAMEWIWSSELFHGRSLHQTTSNTRNELTCSIMSAAIQHVLWELPRFVKIVEVGPRDGLQNEKSTVPASVKIELIHKLVASGLSVVEATSFVSPKWVPQLADAKDVLQGIRHVPDVRFPVLTPNLRGFEAALAAGAKEVAVFASASESFSKSNLNCTIKESLVRYRDVVTSAKKHGMRIRGYVSCVVGCPVEGTIHPSKVAYVAKELYDMGCSEISLGDTIGVGTPGSILAMLEAVMSFVPVDKLAVHFHDTYGQALANILVSLQLGINIVDSSVSGLGGCPYAKGATGNVATEDVVYMLHGLGIETNVDLNKLMDAGDYISKHLGRQSGSKTTTALRKLTT |
||||||||||
| Function | Hydroxymethylglutaryl-CoA lyase, mitochondrial [UniProtKB/Swiss-Prot:O81027] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_11g0002400 | OsNaBo_11g0002400.02 | Chr11 | 1691511 | 1695114 | + | NAM | ||
| CDS seq | atgtcgagcctcgaggagccgctcggtcttggggaccttccaaagttgagtattaacagacttgaaaggttctctccaaatgcttgcagagcaagtgctgatgaccgtagcaccagcaaacgatctttcacagcagttctcattcatggcatatgcaaggccaatatactgattcctcctgcaatggagtggatatggagttcagagctcttccacggaagatctcttcatcagaccacctcaaatacgaggaatgaaCtgacatgtagcattatgtctgcggcaattcaacatgttttgtgggagcttccaaggtttgtgaagatagttgaagtcggaccacgggatggtctgcaaaatgagaagagtactgtaccagcttctgtaaagattgaactgatacacaaattggtggcttctggtctatcagtagttgaagccacaagttttgtttccccaaaatgggtgccgcagctagctgatgcaaaggatgtccttcaagggattaggcatgtgccagatgtgcggtttcctgtgttaactcctaacctcagaggatttgaggctgctcttgcagctggtgcaaaagaagttgcagtcttcgcatctgcctctgaatccttttctaagtcAaaccttaattgtaccatcaaggaaagccttgttcggtaccgtgatgttgtaacttctgccaagaaacatggaatgcgaatccgtgggtatgtttcatgtgtggttggttgccctgttgaaggcacaattcatccatcaaaggtagcatacgtagctaaggagctttatgacatgggttgctcggagatttcacttggagacacgattggtgttggtacaccaggtagcatacttgctatgcttgaagctgtaatgtcttttgttccagtggacaagctcgccgtccaTtttcatgacacatacggccaagcccttgccaacatactggtctctctccaactggggatcaacatagtggactcatcagtgtcaggactgggaggctgcccatatgcaaagggcgccaccggcaatgtcgcgacggaggacgttgtgtacatgctccatggactggggatagagaccaatgttgacctcaacaagctcatggatgctggagattacatctccaagcatctgggaaggcagtcaggctccaagaccaccactgctctccgcaagctaaccacttaa
More
|
|||||||
| Protein seq | MSSLEEPLGLGDLPKLSINRLERFSPNACRASADDRSTSKRSFTAVLIHGICKANILIPPAMEWIWSSELFHGRSLHQTTSNTRNELTCSIMSAAIQHVLWELPRFVKIVEVGPRDGLQNEKSTVPASVKIELIHKLVASGLSVVEATSFVSPKWVPQLADAKDVLQGIRHVPDVRFPVLTPNLRGFEAALAAGAKEVAVFASASESFSKSNLNCTIKESLVRYRDVVTSAKKHGMRIRGYVSCVVGCPVEGTIHPSKVAYVAKELYDMGCSEISLGDTIGVGTPGSILAMLEAVMSFVPVDKLAVHFHDTYGQALANILVSLQLGINIVDSSVSGLGGCPYAKGATGNVATEDVVYMLHGLGIETNVDLNKLMDAGDYISKHLGRQSGSKTTTALRKLTT
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_11g0002400 | OsNaBo_11g0002400.03 | Chr11 | 1692342 | 1695116 | + | NAM | ||
| CDS seq | atgtcgagcctcgaggagccgctcggtcttggggaccttccaaagttgagtattaacagacttgaaaggttctctccaaatgcttgcagagcaagtgctgatgaccgtagcaccagcaattacaagcatcacaatggtggcaacaatcagacgatctttcacagcagttctcattcatggcatatgcaaggccaatatactgattcctcctgcaatggagtggatatggagttcagagctcttccacggaaggttttgtgggagcttccaaggtttgtgaagatagttgaagtcggaccacgggatggtctgcaaaatgagaagagtactgtaccagcttctgtaaagattgaactgatacacaaattggtggcttctggtctatcagtagttgaagccacaagttttgtttccccaaaatgggtgccgcagctagctgatgcaaaggatgtccttcaagggattaggcatgtgccagatgtgcggtttcctgtgttaactcctaacctcagaggatttgaggctgctcttgcagctggtgcaaaagaagttgcagtcttcgcatctgcctctgaatccttttctaagtcAaaccttaattgtaccatcaaggaaagccttgttcggtaccgtgatgttgtaacttctgccaagaaacatggaatgcgaatccgtgggtatgtttcatgtgtggttggttgccctgttgaaggcacaattcatccatcaaaggtagcatacgtagctaaggagctttatgacatgggttgctcggagatttcacttggagacacgattggtgttggtacaccaggtagcatacttgctatgcttgaagctgtaatgtcttttgttccagtggacaagctcgccgtccaTtttcatgacacatacggccaagcccttgccaacatactggtctctctccaactggggatcaacatagtggactcatcagtgtcaggactgggaggctgcccatatgcaaagggcgccaccggcaatgtcgcgacggaggacgttgtgtacatgctccatggactggggatagagaccaatgttgacctcaacaagctcatggatgctggagattacatctccaagcatctgggaaggcagtcaggctccaagaccaccactgctctccgcaagctaaccacttaa
More
|
|||||||
| Protein seq | MSSLEEPLGLGDLPKLSINRLERFSPNACRASADDRSTSNYKHHNGGNNQTIFHSSSHSWHMQGQYTDSSCNGVDMEFRALPRKVLWELPRFVKIVEVGPRDGLQNEKSTVPASVKIELIHKLVASGLSVVEATSFVSPKWVPQLADAKDVLQGIRHVPDVRFPVLTPNLRGFEAALAAGAKEVAVFASASESFSKSNLNCTIKESLVRYRDVVTSAKKHGMRIRGYVSCVVGCPVEGTIHPSKVAYVAKELYDMGCSEISLGDTIGVGTPGSILAMLEAVMSFVPVDKLAVHFHDTYGQALANILVSLQLGINIVDSSVSGLGGCPYAKGATGNVATEDVVYMLHGLGIETNVDLNKLMDAGDYISKHLGRQSGSKTTTALRKLTT
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_11g0002400 | OsNaBo_11g0002400.01 | Chr11 | 1691511 | 1695116 | + | NAM | ||
| CDS seq | atgtcgagcctcgaggagccgctcggtcttggggaccttccaaagttgagtattaacagacttgaaaggttctctccaaatgcttgcagagcaagtgctgatgaccgtagcaccagcaattacaagcatcacaatggtggcaacaatcagacgatctttcacagcagttctcattcatggcatatgcaaggccaatatactgattcctcctgcaatggagtggatatggagttcagagctcttccacggaaggttttgtgggagcttccaaggtttgtgaagatagttgaagtcggaccacgggatggtctgcaaaatgagaagagtactgtaccagcttctgtaaagattgaactgatacacaaattggtggcttctggtctatcagtagttgaagccacaagttttgtttccccaaaatgggtgccgcagctagctgatgcaaaggatgtccttcaagggattaggcatgtgccagatgtgcggtttcctgtgttaactcctaacctcagaggatttgaggctgctcttgcagctggtgcaaaagaagttgcagtcttcgcatctgcctctgaatccttttctaagtcAaaccttaattgtaccatcaaggaaagccttgttcggtaccgtgatgttgtaacttctgccaagaaacatggaatgcgaatccgtgggtatgtttcatgtgtggttggttgccctgttgaaggcacaattcatccatcaaaggtagcatacgtagctaaggagctttatgacatgggttgctcggagatttcacttggagacacgattggtgttggtacaccaggtagcatacttgctatgcttgaagctgtaatgtcttttgttccagtggacaagctcgccgtccaTtttcatgacacatacggccaagcccttgccaacatactggtctctctccaactggggatcaacatagtggactcatcagtgtcaggactgggaggctgcccatatgcaaagggcgccaccggcaatgtcgcgacggaggacgttgtgtacatgctccatggactggggatagagaccaatgttgacctcaacaagctcatggatgctggagattacatctccaagcatctgggaaggcagtcaggctccaagaccaccactgctctccgcaagctaaccacttaa
More
|
|||||||
| Protein seq | MSSLEEPLGLGDLPKLSINRLERFSPNACRASADDRSTSNYKHHNGGNNQTIFHSSSHSWHMQGQYTDSSCNGVDMEFRALPRKVLWELPRFVKIVEVGPRDGLQNEKSTVPASVKIELIHKLVASGLSVVEATSFVSPKWVPQLADAKDVLQGIRHVPDVRFPVLTPNLRGFEAALAAGAKEVAVFASASESFSKSNLNCTIKESLVRYRDVVTSAKKHGMRIRGYVSCVVGCPVEGTIHPSKVAYVAKELYDMGCSEISLGDTIGVGTPGSILAMLEAVMSFVPVDKLAVHFHDTYGQALANILVSLQLGINIVDSSVSGLGGCPYAKGATGNVATEDVVYMLHGLGIETNVDLNKLMDAGDYISKHLGRQSGSKTTTALRKLTT
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr11 | 1692516 | 1692718 | + | OsNaBo_11g0002400.01,OsNaBo_11g0002400.03 | OsNaBo_11g0002400.02,OsNaBo_11g0002400.03,OsNaBo_11g0002400.01 | All |
| SE | Chr11 | 1692819 | 1693082 | + | OsNaBo_11g0002400.02 | OsNaBo_11g0002400.02,OsNaBo_11g0002400.03,OsNaBo_11g0002400.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.608129 | 23.355057 | 6.395856 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0134000 | RBH | 0.701532 | 1.272483 | 4.243569 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g04210 | RBH | 0.946719 | 0.812714 | 0.671900 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0134000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0002450 | RBH | 0.000000 | 19.189066 | 8.467495 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0002500 | RBH | 0.105599 | 3.125358 | 2.122871 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0002470 | RBH | 0.268910 | 14.663716 | 7.207973 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0002420 | RBH | 0.000000 | 0.144960 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0002400 | RBH | 2.767647 | 5.449180 | 13.294515 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0033300 | RBH | 8.1722335 | 12.441556 | 3.1256595 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0002460 | RBH | 0.340505 | 0.490512 | 0.770703 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0032100 | RBH | 8.4304285 | 6.4543445 | 1.377845 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0002340 | RBH | 0.052044 | 0.078039 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0002480 | RBH | 0.311087 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0002470 | RBH | 5.098277 | 34.494919 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0002390 | RBH | 0.345489 | 0.0 | 1.535953 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0002480 | RBH | 0.341007 | 3.918729 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G002420 | RBH | 0.286796 | 0.802488 | 1.636033 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0002640 | RBH | 0.687279 | 2.193708 | 6.331213 |
