Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_10g0019990 | OGI:10066980 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr10:24013852-24017156 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcgcagtgggacgcgctcgtggacgccgcgctggcgaggctggcgtccaggagcctcctgcgcgccacgcgccccgtcgccctcgcgccgccgcccgcgccgccggagatcttcccctgcccaggcccgtgggaccgcgcagccgtcgagatccggctcgaccgcgcaacgctccaccaatggctggctgaaggtccaacctttttttatcatctgctttgcttccatgcatatcaaattttcatttttttattattatttcttccatgtaataactgcctttgagataagcctaaacaacatgttctagtttctttcaatatcatttttaatgggaaaggtgttatcaacaattctagttgttatcaatatagtttcgttttgcagaaactctaccaacttctcatgtatcgttttacttgattaggtggtgaggggagtggccaagaagagaaagtggacgagaaactgattcttttctccgggaatgattacatgggcctcagctcgcatcctgcaattcgccatgccgcagtgaaggtgctcctttcttgcatccatggctattgtttggtgcggaatttttttgacactctaggatttgcaccatgtttcattgaggggcaaatcctagactggcgcatgatcgatttttccttgtttgatctatggagtggactgaatcaatgcttcggtggttaactttgccaacattctggtgtatctactaggcagctgaagagtacggcatgggccctagaggatctgcgttgatttgtggatatactacctatcacaaaatggtggaggaatcgttggcagagctgaagaaaaaggaggtactgttgtgttcaaaatttaagcaaccacatgtgcccggtatacaaaataaaataaaaaacttgcagccttactagagtccttctacaggattgccttctttgtcccactggattttctgccaatatgtctgtaatgacggctctgggaaacatcagctctctgttggctgctgggagaaaacctgcggaggacgaaagaatagcaattttctcagatgctctgaaccatgcttcgatcattgatgggattcgccttgttgagcgacagcaagaagtggtatcatttgtgtacaagcactgtgacatgtcccatcttgaacttttgctgtatgtttttcactttccagtcataactcataacatacaaaatgctaagcactaatttacttagttataaaccatgtttgtgattacacatgcagatccagttgctcaatggaaaagaaagttgttgtcacagataggcaagttatatatccaagtaaatttcatcatttaagaagcatttattctttgtattagtgagtagtgtaccgaactcagaagctcttttgattggtaaaatgcagcctgttcagcatggatggtgattttgttccattgcctgagcttgtcaagttgcgcagaaagtatgggtttttgttggtgatcgacgatgttagtatattatcttccctgaatacagtatttttctggcctaatattaatcaagttatgttgcaaatttccttttcaaggcacatggaacacttgtttgtggtgagaatggtggtggtgcacctgagctgtttgaatgtgagaatgagattgacataagtgttggcaccttaagcaaggctgctggctgccagggtggttttatagcatgcaggtattctattataaggcatgtccatattatctggcaaggaagaactgctcatagtgcatattaaactgtggaaatgaatcatagatgccttgaaataaaggacttcataaaatacctgagacaaaacctacttgataatatgtaaacagtagcgacatgctcatcacggccaacaggaaatgttagaacaaatgcttggatgacttcaaacattttccatatctgttgctgtcctgagtaacttatgggcatcggcgattatagtttaggaattacgctaagtgcttaacttttgatgttaatagatgctctggacaccacataatattatttatcagggtcttggttatgaaatttgcacttcagagcctcatgcttataaactcaataaatagaagttctcttgaattagcctctcttgataatacttcatgccataatctctgcattttggatgcatgccataatctgtctttacaatttccaatcttatgacgaataataatttgaaatttgtttgcagtacccgatggaagaggctgattcaatcgcgaggtcgttccttcatattttcaactgctttaccagtgccagtagttgcttctgtgtatggtaatactctacacattgtgttctaataatttaaaatattgatatgggaatctggtattgattgctacatatacctgtttgtgttacactgttttcacgaggaagggcatagaaaaccttctctatcacattaatccatagaaggacgaatttaaataaaacattaactaacgtaaaaattatctcattgtcaaagtaaatatcaggaattcttctaaacagaatcaattaatttcagctgccctctatgtatcaagggaggagagatggcggagatcagtgatctggaggcatgtgcagtattttgcctctttgacaaaactcaacataacaagtcccataatttccattgtagttggaagtgaaaaagcagcacttagatctggaaggttctcacttcctcccttttttgtttcttgataatatcagtagttgtgtgttctaatcttttcattttgaaactgcagggatatgctaagatctggatttcatgtcacgccaatccgaccacccacagtaccgcccaactcatgcaggttgaaaattttctgttcctagcattttccatcctaatctctattcatagacttcagcaacctaaagcatcagtgttcctagggaccatagactgtaattggattaggaaccagggtatatatgcatttttattaatgtgttttcttggtctttgctactgctctccaaagatggaatccctgctagactttttttttgaactgcttgctataatttgttgtccagatattagatggtcctagtgttcatcgacataaggtcgggcctgtttcaaccaagattaactgttttatttctttccatgaattctttgcaggttgcgaataactctcagtgcttctcattcttcggatgacatcaaaaggctggtggatgcgctgacgccgtggctccctcacaaacatgatattcagatatatgctgtggcatcaaagctctaa
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| CDS seq | atggcgcagtgggacgcgctcgtggacgccgcgctggcgaggctggcgtccaggagcctcctgcgcgccacgcgccccgtcgccctcgcgccgccgcccgcgccgccggagatcttcccctgcccaggcccgtgggaccgcgcagccgtcgagatccggctcgaccgcgcaacgctccaccaatggctggctgaaggtggtgaggggagtggccaagaagagaaagtggacgagaaactgattcttttctccgggaatgattacatgggcctcagctcgcatcctgcaattcgccatgccgcagtgaaggcagctgaagagtacggcatgggccctagaggatctgcgttgatttgtggatatactacctatcacaaaatggtggaggaatcgttggcagagctgaagaaaaaggaggattgccttctttgtcccactggattttctgccaatatgtctgtaatgacggctctgggaaacatcagctctctgttggctgctgggagaaaacctgcggaggacgaaagaatagcaattttctcagatgctctgaaccatgcttcgatcattgatgggattcgccttgttgagcgacagcaagaagtggtatcatttgtgtacaagcactgtgacatgtcccatcttgaacttttgctatccagttgctcaatggaaaagaaagttgttgtcacagataggcaagttatatatccaagtaaatttcatcatttaagaagcatttattctttgtattacctgttcagcatggatggtgattttgttccattgcctgagcttgtcaagttgcgcagaaagtatgggtttttgttggtgatcgacgatgcacatggaacacttgtttgtggtgagaatggtggtggtgcacctgagctgtttgaatgtgagaatgagattgacataagtgttggcaccttaagcaaggctgctggctgccagggtggttttatagcatgcagggatatgctaagatctggatttcatgtcacgccaatccgaccacccacagtaccgcccaactcatgcaggttgcgaataactctcagtgcttctcattcttcggatgacatcaaaaggctggtggatgcgctgacgccgtggctccctcacaaacatgatattcagatatatgctgtggcatcaaagctctaa
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| Protein seq | MAQWDALVDAALARLASRSLLRATRPVALAPPPAPPEIFPCPGPWDRAAVEIRLDRATLHQWLAEGGEGSGQEEKVDEKLILFSGNDYMGLSSHPAIRHAAVKAAEEYGMGPRGSALICGYTTYHKMVEESLAELKKKEDCLLCPTGFSANMSVMTALGNISSLLAAGRKPAEDERIAIFSDALNHASIIDGIRLVERQQEVVSFVYKHCDMSHLELLLSSCSMEKKVVVTDRQVIYPSKFHHLRSIYSLYYLFSMDGDFVPLPELVKLRRKYGFLLVIDDAHGTLVCGENGGGAPELFECENEIDISVGTLSKAAGCQGGFIACRDMLRSGFHVTPIRPPTVPPNSCRLRITLSASHSSDDIKRLVDALTPWLPHKHDIQIYAVASKL |
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| Function | 8-amino-7-oxononanoate synthase [UniProtKB/Swiss-Prot:Q8GW43] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_10g0019990 | OsNaBo_10g0019990.01 | Chr10 | 24013852 | 24017156 | + | NAM | ||
| CDS seq | atggcgcagtgggacgcgctcgtggacgccgcgctggcgaggctggcgtccaggagcctcctgcgcgccacgcgccccgtcgccctcgcgccgccgcccgcgccgccggagatcttcccctgcccaggcccgtgggaccgcgcagccgtcgagatccggctcgaccgcgcaacgctccaccaatggctggctgaaggtggtgaggggagtggccaagaagagaaagtggacgagaaactgattcttttctccgggaatgattacatgggcctcagctcgcatcctgcaattcgccatgccgcagtgaaggcagctgaagagtacggcatgggccctagaggatctgcgttgatttgtggatatactacctatcacaaaatggtggaggaatcgttggcagagctgaagaaaaaggaggattgccttctttgtcccactggattttctgccaatatgtctgtaatgacggctctgggaaacatcagctctctgttggctgctgggagaaaacctgcggaggacgaaagaatagcaattttctcagatgctctgaaccatgcttcgatcattgatgggattcgccttgttgagcgacagcaagaagtggtatcatttgtgtacaagcactgtgacatgtcccatcttgaacttttgctatccagttgctcaatggaaaagaaagttgttgtcacagataggcaagttatatatccaagtaaatttcatcatttaagaagcatttattctttgtattacctgttcagcatggatggtgattttgttccattgcctgagcttgtcaagttgcgcagaaagtatgggtttttgttggtgatcgacgatgcacatggaacacttgtttgtggtgagaatggtggtggtgcacctgagctgtttgaatgtgagaatgagattgacataagtgttggcaccttaagcaaggctgctggctgccagggtggttttatagcatgcagggatatgctaagatctggatttcatgtcacgccaatccgaccacccacagtaccgcccaactcatgcaggttgcgaataactctcagtgcttctcattcttcggatgacatcaaaaggctggtggatgcgctgacgccgtggctccctcacaaacatgatattcagatatatgctgtggcatcaaagctctaa
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| Protein seq | MAQWDALVDAALARLASRSLLRATRPVALAPPPAPPEIFPCPGPWDRAAVEIRLDRATLHQWLAEGGEGSGQEEKVDEKLILFSGNDYMGLSSHPAIRHAAVKAAEEYGMGPRGSALICGYTTYHKMVEESLAELKKKEDCLLCPTGFSANMSVMTALGNISSLLAAGRKPAEDERIAIFSDALNHASIIDGIRLVERQQEVVSFVYKHCDMSHLELLLSSCSMEKKVVVTDRQVIYPSKFHHLRSIYSLYYLFSMDGDFVPLPELVKLRRKYGFLLVIDDAHGTLVCGENGGGAPELFECENEIDISVGTLSKAAGCQGGFIACRDMLRSGFHVTPIRPPTVPPNSCRLRITLSASHSSDDIKRLVDALTPWLPHKHDIQIYAVASKL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.159375 | 5.227727 | 1.337292 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0560900 | RBH | 1.357847 | 1.342122 | 1.866249 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g41150 | RBH | 0.909222 | 0.894303 | 0.465403 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0560900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0019960 | RBH | 0.265868 | 0.0 | 1.114991 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0020080 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0019740 | RBH | 0.000000 | 1.567836 | 3.961802 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0020290 | RBH | 0.100300 | 0.103703 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0019990 | RBH | 0.656824 | 1.752869 | 5.485850 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0363700 | RBH | 1.695862 | 4.266268 | 5.644574 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0019820 | RBH | 0.159599 | 0.163471 | 0.611320 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0390700 | RBH | 2.042483 | 5.171002 | 10.870327 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0019600 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0019530 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0020050 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0019620 | RBH | 0.109179 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0020100 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G019940 | RBH | 0.000000 | 0.582039 | 1.079622 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
