Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_10g0018560 | OGI:10064030 | 10/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr10:22908000-22913771 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcgcggccggatcctcgccgacgcgacggcggcgccgccaggaggcgccgtcgtgcccctgcactggtccggtgctcgctacgtggcgaacttcaccatcggcacgccgccgcaggccgtgtcggggatcgtcgacctctccggcgagctcgtctggacgcagtgcgcggcgtgcaggagcagcgggtgcttcaagcaggaactccccgtgttcgacccgtccgcgtcgaacacctaccgggcggagcagtgcggctccccgctctgcaagtccatcccgacgcgcaactgctccggcgacggcgagtgcggctacgaggcgccctccatgttcggggacaccttcgggatcgccagcaccgacgccatcgccatagggaacgccgaggggaggctcgcctttgggtgcgtcgtggcgagcgacggcagcatcgacggcgccatggacgggccttccgggttcgtcgggctggggaggacgccgtggtcgctcgtcggccagtcgaacgtcaccgccttctcctactgcctggcgccgcacggccccgggaagaagagcgcgctgttcctcggcgcctccgcgaagctcgccggcgccggcaagagcaacccgccgacaccgttactcggccagcacgcgtcgaacacctccgacgatggctcggacccctactacacggtgcagctggaagggatcaaggccggcgacgtggccgtcgcggcggcatccagcggcggcggcgccatcaccgtcctgcagctcgagaccttcaggccgttgagctacctgcccgacgccgcgtaccaggcgctcgagaaggttgtcacggccgccctcggctcgccgtcgatggcgaacccgccggaacccttcgacctttgcttccagaatacggcggtcagcggcgtgccggacctcgtgttcacgttccagggcggcgccacgttgacggcgccgccgtcgaagtatcttctcggcgacgggaacgggaacggcacggtgtgcttgtccatcctgagctcgacgcggctggactcggctgatgatggcgtgagcatcctgggaagcttgctgcaggagaacgtccacttcctcttcgacctggagaaggagacgctcaccttcgaacctgcagactgcagctcactcacctaatggctgcgagatttgctccggtctaacgaaaagtacttcgaggtaccagtatctcattgtactaaatcgttttcaatcgttggatctaattggacaggacgtgcattgttaaatccaacgatcggaaacgatttggcaccgtaaagtatcagtatcttaaggttctttttattggaccagagcaaatatcaatggctgctgcttcttcctggaagcatatatatggtgattgatatatgtacacatgtatgcagtgaggtgtgtgtgtgtttgtgattattgccagaataaacgcagctatagacggcatgtgctgcggtatgttttactgtgctcttcagtgtgtgtcactcactcacctgcgtgtgcttgtcatcataggctgatatgatgtcagttatatgtgaatgtgagtgcagacaatatccagtcctgatctggagttcatgtgtctaatggttcatcaaatggattcattttgtctagcatagtttcctgtggcagaaataatgctatgaatgctgttctgtaaaagtaaacataccataccagtggagtgcatacagagtatggcttcatacctcaatttcaagtggtgatacatattaacagcttcagaaacaaacaaaaaaatgattattaccgcagtcaaccctaacacacagaaatcagtaatcaaacctttaaaatcaagcaggtcaagtaccacatggtctaaaaaaattgaaacacaattgtaacttgtaagacatcttttcacggcattttcgcatattgtcaggagactttgtttaagatatataatcttgccttatgactactgcacggtaagaacaaatatgacaactggaaatcttaacagtaacataaggatatgtttgacaaagacaccttgcattctgaaacacccatgcactggtgcatggatgctcagacaaagaacttccacaaaagccgcatcacactgcccaactcgaggtaaataatcacctatatgtagcatggagagtgatcacaaataaacataaaattatcatggcgacatcagacttaaaagtacaggagcagaggcattgtgaaacatggtactccctccgtccaggattataagagattattccctatttggcactcattaaggaagagaaaaaaatgcatctagtaatatgtggaagtacacattggcacattaaataagctgcacaatgtacttatttggagtaaactattgcttttggcaggaaaaagagcatctaaggacagtgacttgatctctgctgtactggataaccaaaatcccctgaatcatggacaaaccaaggcgccattatccactataattgtggccagagggagtacctttgttgctcggagaaattttcctttcaagaagactcgaaagaagaatatgtacgctttatagtgcccaggttttagcaaaatgtcaagaaatttgatcaattttaatcatactgcagacatgtgaaaataccatatgggcaaaaggatagtggttcaacaattctaacacaaggatctaaaaagtaaatgaacagattcactcaaaaaagagtactagtaaaagtatgtcaagcttgcttattactgtaccataaaaaaattgcacggatcaaagtgacaaataatcagccttcagggttcacgcagagatgggttacctttaccgcaaggttgagcaaagtgagttcaactaacagatatgctcaagagtgagcgattgccatagcgcatagaagttttatttgcaccagtttttagtttgaaaaacgactactgtaatagtgtaatttttttcaatatttttgtagtattttaaaatatcctcataagtggagtactatatctgtccgaaaataactttattttcacccatccttaatacataccaataaaaaataaaaaaatactccctccgtgccattttaagtacaaccataagttttcgtgttcaattttaatcatccgtattatttaatttttttaaaaaaataaaaaacataagtcatgtgtaaattactatttatattttatcatctaataacaataaaaatattaatcataaaaaaattcaaataaaacgatcgatcaaaattggacatataaactcatgagtataatgaagcgggatcctctaacataaggtcacccccgacgtggtcactgagaagtgggcccgagagcggtgggggtctacatgtcagccactatgttcctctatttttatgtcagaggatcccaatccgcttaaaatgggatgggtgagtaccaatagatcctcaactttatcaaatcctttatctagtctaaacacacaccccaccaaaagtacagtgactgattggagaagccggctccacttgtcagtggcgtgcagacgtgcagtagcgcaaagaatccccatcactctatcttacataaggtgtaagatataaaccatatttaaagtaatttaagtgataaaaaaattcgcaataaaataaattataattacataattttttaataagacgaatggtcaatcatgttaaaaaaagtcaacggcgttatctgcttaaaaacgaaggtagtaagtcttagagatttCccttactcctaaatttccacaacaggaagggtagaaataaataaattatatccttaccaagaccaacatcagtgacggttgaacgatagatatgtgcagagttgaagcttaatttcgtctcaatggcacgcagtttcgctggtttctgaggaatatccaaggtagctccatgaacgtcaatgaatattgaaatggagaggatgacaccatgaaggctcaagtggctcgtaattacagtgttaatgcctcttgagaaggtttaccttttcgtttacaaagtgaaaatcgtttttcattggtttatcgaaaacctaaaaaaattgacgactttcaatcagtacggtataaaaacatgctaataacgacaaactgataaccagcgatctcataaaaatttgatcagtttaaggttaaacccatcagtttcgtgaaccctgactcatggtgacttagagcctatttagggagctttaaattctgagaagcagatatttggtagccagtttctaagaatctggaaaagcactaaaacccagattctccagcttttggcttcttagttcattttcagaatatgtaactacagattctcagaagctgtggattgtttgggacagtttctagcagaagaagctccccaaacagggccttagtcctggactccttgttcttatataagcccatgcctcgagtctcgatttgtatagtgtgatttggggaagaggaagataatcacggtcactaatcctctcattagctaactaacagtagtcataataatcatgggaaggctagtggcaacactagtgctcgtgatgtgctcggcggcgtgttcgctcgcgcgcgcgcacggcggcggcctccggcgaggtgtagagcgtgccaacatgcgcggccgcctcctcgccgacgcggcggtggcaggaggcggcggcggcgtcgtgccgatctactggtcccagccgctctacatggcgaacctcaccatcggcacgccgccgcagccggcgtcggcgatcatccacctcgccggggagttcgtctggacgcagtgctcgccgtgccgccgctgcttcaagcaggatcttcccctgttcaaccggtccgcgtcgtccacctaccggccggagccgtgcggcacggccctgtgcgagtccgtcccggcgagcacctgctccggcgacggcgtgtgcaactacgaggtggaaaccatgttcggggacacgtccgggatcggcggcaccgacaccttcgccatcgggacggccacggcgagcctcgccttcgggtgcgccatggacagcgacatcaagcaactgctgggagcttccggggtcgtcgggctagggaggacgccgtggtcgctggtcgggcagatgaacgccacggcgttttcctactgcctcgcgccgcacggcgcggccgggaagaagagcgcgctgctcctcggcgcctccgcgaagctcgccggcggcaagagcgccgccacgacgccgctcgtcaacacctccgacgactcctccgattacatgatccatctggaagggatcaaattcggcgacgtgataatcgagccgcctccgaacggcagcgtcgtcctggtcgacaccatctttggggtgagcttcctggtcgacgccgcgttccacgccatcaagaaggcggtgacggtcgccgtcggcgcggcgccgatggcgacgccgacgaaaccgttcgatctctgcttcccgaaagcagctgcggcggcgggggccaacagcagcttgccgttgccggacgtcgtgctcacgttccagggcgccgccgcgttgacggtgccgccgtcgaagtacatgtacgacgccgggaacggcacggtgtgcctcgccatgatgagctcggcgatgctgaacctgacgacggagctgagcatcctgggaagattgcatcaggagaacatccacttcctcttcgacctcgacaaggagacgctctccttcgaaccagcggattgcagctcactctcctaa
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| CDS seq | atgcgcggccggatcctcgccgacgcgacggcggcgccgccaggaggcgccgtcgtgcccctgcactggtccggtgctcgctacgtggcgaacttcaccatcggcacgccgccgcaggccgtgtcggggatcgtcgacctctccggcgagctcgtctggacgcagtgcgcggcgtgcaggagcagcgggtgcttcaagcaggaactccccgtgttcgacccgtccgcgtcgaacacctaccgggcggagcagtgcggctccccgctctgcaagtccatcccgacgcgcaactgctccggcgacggcgagtgcggctacgaggcgccctccatgttcggggacaccttcgggatcgccagcaccgacgccatcgccatagggaacgccgaggggaggctcgcctttgggtgcgtcgtggcgagcgacggcagcatcgacggcgccatggacgggccttccgggttcgtcgggctggggaggacgccgtggtcgctcgtcggccagtcgaacgtcaccgccttctcctactgcctggcgccgcacggccccgggaagaagagcgcgctgttcctcggcgcctccgcgaagctcgccggcgccggcaagagcaacccgccgacaccgttactcggccagcacgcgtcgaacacctccgacgatggctcggacccctactacacggtgcagctggaagggatcaaggccggcgacgtggccgtcgcggcggcatccagcggcggcggcgccatcaccgtcctgcagctcgagaccttcaggccgttgagctacctgcccgacgccgcgtaccaggcgctcgagaaggttgtcacggccgccctcggctcgccgtcgatggcgaacccgccggaacccttcgacctttgcttccagaatacggcggtcagcggcgtgccggacctcgtgttcacgttccagggcggcgccacgttgacggcgccgccgtcgaagtatcttctcggcgacgggaacgggaacggcacggtgtgcttgtccatcctgagctcgacgcggctggactcggctgatgatggcgtgagcatcctgggaagcttgctgcaggagaacgatatgtttgacaaagacaccttgcattctgaaacacccatgcactggtgcatggatgctcagacaaagaacttccacaaaagccgcatcacactgcccaactcgaggctagtggcaacactagtgctcgtgatgtgctcggcggcgtgttcgctcgcgcgcgcgcacggcggcggcctccggcgaggtgtagagcgtgccaacatgcgcggccgcctcctcgccgacgcggcggtggcaggaggcggcggcggcgtcgtgccgatctactggtcccagccgctctacatggcgaacctcaccatcggcacgccgccgcagccggcgtcggcgatcatccacctcgccggggagttcgtctggacgcagtgctcgccgtgccgccgctgcttcaagcaggatcttcccctgttcaaccggtccgcgtcgtccacctaccggccggagccgtgcggcacggccctgtgcgagtccgtcccggcgagcacctgctccggcgacggcgtgtgcaactacgaggtggaaaccatgttcggggacacgtccgggatcggcggcaccgacaccttcgccatcgggacggccacggcgagcctcgccttcgggtgcgccatggacagcgacatcaagcaactgctgggagcttccggggtcgtcgggctagggaggacgccgtggtcgctggtcgggcagatgaacgccacggcgttttcctactgcctcgcgccgcacggcgcggccgggaagaagagcgcgctgctcctcggcgcctccgcgaagctcgccggcggcaagagcgccgccacgacgccgctcgtcaacacctccgacgactcctccgattacatgatccatctggaagggatcaaattcggcgacgtgataatcgagccgcctccgaacggcagcgtcgtcctggtcgacaccatctttggggtgagcttcctggtcgacgccgcgttccacgccatcaagaaggcggtgacggtcgccgtcggcgcggcgccgatggcgacgccgacgaaaccgttcgatctctgcttcccgaaagcagctgcggcggcgggggccaacagcagcttgccgttgccggacgtcgtgctcacgttccagggcgccgccgcgttgacggtgccgccgtcgaagtacatgtacgacgccgggaacggcacggtgtgcctcgccatgatgagctcggcgatgctgaacctgacgacggagctgagcatcctgggaagattgcatcaggagaacatccacttcctcttcgacctcgacaaggagacgctctccttcgaaccagcggattgcagctcactctcctaa
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| Protein seq | MRGRILADATAAPPGGAVVPLHWSGARYVANFTIGTPPQAVSGIVDLSGELVWTQCAACRSSGCFKQELPVFDPSASNTYRAEQCGSPLCKSIPTRNCSGDGECGYEAPSMFGDTFGIASTDAIAIGNAEGRLAFGCVVASDGSIDGAMDGPSGFVGLGRTPWSLVGQSNVTAFSYCLAPHGPGKKSALFLGASAKLAGAGKSNPPTPLLGQHASNTSDDGSDPYYTVQLEGIKAGDVAVAAASSGGGAITVLQLETFRPLSYLPDAAYQALEKVVTAALGSPSMANPPEPFDLCFQNTAVSGVPDLVFTFQGGATLTAPPSKYLLGDGNGNGTVCLSILSSTRLDSADDGVSILGSLLQENDMFDKDTLHSETPMHWCMDAQTKNFHKSRITLPNSRLVATLVLVMCSAACSLARAHGGGLRRGVERANMRGRLLADAAVAGGGGGVVPIYWSQPLYMANLTIGTPPQPASAIIHLAGEFVWTQCSPCRRCFKQDLPLFNRSASSTYRPEPCGTALCESVPASTCSGDGVCNYEVETMFGDTSGIGGTDTFAIGTATASLAFGCAMDSDIKQLLGASGVVGLGRTPWSLVGQMNATAFSYCLAPHGAAGKKSALLLGASAKLAGGKSAATTPLVNTSDDSSDYMIHLEGIKFGDVIIEPPPNGSVVLVDTIFGVSFLVDAAFHAIKKAVTVAVGAAPMATPTKPFDLCFPKAAAAAGANSSLPLPDVVLTFQGAAALTVPPSKYMYDAGNGTVCLAMMSSAMLNLTTELSILGRLHQENIHFLFDLDKETLSFEPADCSSLS |
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| Function | Aspartic proteinase nepenthesin-1 [UniProtKB/Swiss-Prot:Q766C3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_10g0018560 | OsNaBo_10g0018560.01 | Chr10 | 22908000 | 22913771 | + | NAM | ||
| CDS seq | atgcgcggccggatcctcgccgacgcgacggcggcgccgccaggaggcgccgtcgtgcccctgcactggtccggtgctcgctacgtggcgaacttcaccatcggcacgccgccgcaggccgtgtcggggatcgtcgacctctccggcgagctcgtctggacgcagtgcgcggcgtgcaggagcagcgggtgcttcaagcaggaactccccgtgttcgacccgtccgcgtcgaacacctaccgggcggagcagtgcggctccccgctctgcaagtccatcccgacgcgcaactgctccggcgacggcgagtgcggctacgaggcgccctccatgttcggggacaccttcgggatcgccagcaccgacgccatcgccatagggaacgccgaggggaggctcgcctttgggtgcgtcgtggcgagcgacggcagcatcgacggcgccatggacgggccttccgggttcgtcgggctggggaggacgccgtggtcgctcgtcggccagtcgaacgtcaccgccttctcctactgcctggcgccgcacggccccgggaagaagagcgcgctgttcctcggcgcctccgcgaagctcgccggcgccggcaagagcaacccgccgacaccgttactcggccagcacgcgtcgaacacctccgacgatggctcggacccctactacacggtgcagctggaagggatcaaggccggcgacgtggccgtcgcggcggcatccagcggcggcggcgccatcaccgtcctgcagctcgagaccttcaggccgttgagctacctgcccgacgccgcgtaccaggcgctcgagaaggttgtcacggccgccctcggctcgccgtcgatggcgaacccgccggaacccttcgacctttgcttccagaatacggcggtcagcggcgtgccggacctcgtgttcacgttccagggcggcgccacgttgacggcgccgccgtcgaagtatcttctcggcgacgggaacgggaacggcacggtgtgcttgtccatcctgagctcgacgcggctggactcggctgatgatggcgtgagcatcctgggaagcttgctgcaggagaacgatatgtttgacaaagacaccttgcattctgaaacacccatgcactggtgcatggatgctcagacaaagaacttccacaaaagccgcatcacactgcccaactcgaggctagtggcaacactagtgctcgtgatgtgctcggcggcgtgttcgctcgcgcgcgcgcacggcggcggcctccggcgaggtgtagagcgtgccaacatgcgcggccgcctcctcgccgacgcggcggtggcaggaggcggcggcggcgtcgtgccgatctactggtcccagccgctctacatggcgaacctcaccatcggcacgccgccgcagccggcgtcggcgatcatccacctcgccggggagttcgtctggacgcagtgctcgccgtgccgccgctgcttcaagcaggatcttcccctgttcaaccggtccgcgtcgtccacctaccggccggagccgtgcggcacggccctgtgcgagtccgtcccggcgagcacctgctccggcgacggcgtgtgcaactacgaggtggaaaccatgttcggggacacgtccgggatcggcggcaccgacaccttcgccatcgggacggccacggcgagcctcgccttcgggtgcgccatggacagcgacatcaagcaactgctgggagcttccggggtcgtcgggctagggaggacgccgtggtcgctggtcgggcagatgaacgccacggcgttttcctactgcctcgcgccgcacggcgcggccgggaagaagagcgcgctgctcctcggcgcctccgcgaagctcgccggcggcaagagcgccgccacgacgccgctcgtcaacacctccgacgactcctccgattacatgatccatctggaagggatcaaattcggcgacgtgataatcgagccgcctccgaacggcagcgtcgtcctggtcgacaccatctttggggtgagcttcctggtcgacgccgcgttccacgccatcaagaaggcggtgacggtcgccgtcggcgcggcgccgatggcgacgccgacgaaaccgttcgatctctgcttcccgaaagcagctgcggcggcgggggccaacagcagcttgccgttgccggacgtcgtgctcacgttccagggcgccgccgcgttgacggtgccgccgtcgaagtacatgtacgacgccgggaacggcacggtgtgcctcgccatgatgagctcggcgatgctgaacctgacgacggagctgagcatcctgggaagattgcatcaggagaacatccacttcctcttcgacctcgacaaggagacgctctccttcgaaccagcggattgcagctcactctcctaa
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| Protein seq | MRGRILADATAAPPGGAVVPLHWSGARYVANFTIGTPPQAVSGIVDLSGELVWTQCAACRSSGCFKQELPVFDPSASNTYRAEQCGSPLCKSIPTRNCSGDGECGYEAPSMFGDTFGIASTDAIAIGNAEGRLAFGCVVASDGSIDGAMDGPSGFVGLGRTPWSLVGQSNVTAFSYCLAPHGPGKKSALFLGASAKLAGAGKSNPPTPLLGQHASNTSDDGSDPYYTVQLEGIKAGDVAVAAASSGGGAITVLQLETFRPLSYLPDAAYQALEKVVTAALGSPSMANPPEPFDLCFQNTAVSGVPDLVFTFQGGATLTAPPSKYLLGDGNGNGTVCLSILSSTRLDSADDGVSILGSLLQENDMFDKDTLHSETPMHWCMDAQTKNFHKSRITLPNSRLVATLVLVMCSAACSLARAHGGGLRRGVERANMRGRLLADAAVAGGGGGVVPIYWSQPLYMANLTIGTPPQPASAIIHLAGEFVWTQCSPCRRCFKQDLPLFNRSASSTYRPEPCGTALCESVPASTCSGDGVCNYEVETMFGDTSGIGGTDTFAIGTATASLAFGCAMDSDIKQLLGASGVVGLGRTPWSLVGQMNATAFSYCLAPHGAAGKKSALLLGASAKLAGGKSAATTPLVNTSDDSSDYMIHLEGIKFGDVIIEPPPNGSVVLVDTIFGVSFLVDAAFHAIKKAVTVAVGAAPMATPTKPFDLCFPKAAAAAGANSSLPLPDVVLTFQGAAALTVPPSKYMYDAGNGTVCLAMMSSAMLNLTTELSILGRLHQENIHFLFDLDKETLSFEPADCSSLS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0539200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g39360 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0539200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0018480 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0018870 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0018260 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0018810 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0018540 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0346100 | RBH | 0.006906 | 0.079626 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0018420 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0371100 | RBH | 0 | 0.0100545 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0018180 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0018120 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0018650 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0018220 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0018730 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G018480 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0018490 | SBH | 0.0 | 5.647221 | 0.0 |
