Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_10g0018390 | OGI:10063770 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr10:22794537-22800386 | ||||||||
| Gene Symbol | F3H2, OsF3H-2, F3H-2, OsF3H2, FNS1, OsFNS1 | ||||||||||
| DNA seq | gatcccttctcctcctccttccgctataagaccagctcggggatcgcctcccggtgagccatgtcgccggacggtcgccgcacacgccacagtcgtcgttgcacacacgcgccgccgttgttgtcgtcctctcctcctccgacgtcgtcgtcgccgtcgccgtcgtgaacatggcggcggaggcggagcagcagcaccagctgctgtcgacggccgtgcacgacacgatgccggggaagtacgtccgcccggagtcgcagcgcccgcgcctcgacctcgtcgtctccgacgcccgcatccccgtcgtcgacctcgcctcccccgaccgcgccgccgtcgtctccgccgtcggcgacgcctgtcgcacccacggcttcttccaggtatcatcatcatcaacacgaattcctctcaacaatctgcagaaattgcagctaagctgacgacgggctgatcaaaatccccgcgtgtgattccaggtggtgaaccatggcatcgatgcggcgctgatcgcgtcggtcatggaggtgggccgcgagttcttccggctgccggcggaggagaaggcgaagctctactccgacgatccggccaagaagatacggctgtcgacgagcttcaacgtgcgcaaggagacggtgcacaactggcgcgattacctccgcctccactgctatcctctccaccagttcgtccccgactggccctccaatccgccctccttcaagtacaaatttctattttgtctcagctctcctacacatttagttactgcattcatgcttgccgttcgccattcagtatcggttactgctaaaacacgtttgaaattgactgcgattaatttatttttggacagtagcatataggagcaacttttagcgttaaaaatctatatcggaatataataaattatctgcctatttaatttcactcatctcaatcaatcacaactatcacatattcaattttactcgtatatttaaaagtgtaaaaaaatttaaaagtatttatattttaggacagatggagtacaattattttgcatggaccacagtacctttgtggacaaaagtatattcttaaaaaaaattctctgcatttaggctgtgttcgcatatgccggttaccaacccaaatagtacgcacggaaaacagagcatccattagcacgtgattaattaagtatttgctaaTttttttaaaaaatggatcaatatgattttttaaagcagctttcttacagaaaatttttaaaaaagacacaccatttaaccgtttgaaaaacgtgcgcacggaaaacgaagcaagggagttgggagcttggagttccgaacacactctacaccatttccttttgtggttgcacgttagcaaacattttcaaaaggtaaatggtttgctatcatttaaaacatgacgcattagagaggatgaagcataaataaaggtttggccggtctattacacagacagaagatcaatcctcaagtcagtcagtctattcacatatcacaagttcacaaataacaagatatgcgacaaaggatatcatcaatcttgtcaaattctacttgggaggtcatgacagaatgtaggaatgcaagcgggcaacccactgcctgtataaaaaactgtcttatagtttatttactacttgctactataaaatttgaaagaaaaaatcaactacaattgtaataaccggaagaaaataaaacaccgcttgctcgggccacttacatccctacaatattgttaattggaaaaagattctgatgggattgaaactattgtactgttccagagcttaataaaagtaacatagatttataatttcactgaattttactttgtaaccatatatagcaataggatcgaataccacatatatcaaattggcaggataatttgaagtagggaccactaatagttggaaaagtaaaagaacaacctaggctcaacctggaccgcaactgctggaattggctggtattagaactggaattggtaggtgccataattccaaattccagccatttcggccggtaccgaaatgaaattgataacatttggaaattgcaatgcttatcacgctagcttctaagcttcatgctccgtgtcaccttccactatgTtttttttttttgagtaaagtccatcaccggtctctaaacttgtaccgttatgtcattccggttcctaaactcgcaaatcgaccgttcaggtcctcaaacttgttcgactgtgtcatcctggtccctaaacttgcagatcactcgtttaggtcctccaacttgttcagttgtgtcacaccggtccctaaacaggacggtctagagactttatatcaaaaaataattcataactttttcatgtgaactctaatgaagacaaactttatatcaaaattgtagctctcgatgcgacctacaactttttagttgaaaagtttttgaattaaaactgtttagggtcccaaaatattgttgcatgtttatagattttgaaattttaattttaaaattacattttgggacaaaaaatgacttaaaataaaaaaaaattcaactacaaagttgtagaccgcgtcaagggctacaaatttggtataatgtttatcttcattagagttcacatgaaaaagttatgaattatttttaaatataaagtctttagaccgtcctatttgacccagatgatattcaaatccaagtttagggaccggggtgacacaactgaacaagttggaggacctaaacgagtgatctgcaagtttaggaaccgggatgacccagtcaaacaagtttgagaacctaaacgttcgatttgcgagtttaggtaccgggataatacagcggtacaaatttagggaccggtaatgaactttactcttttttttctttcacaagtcagagtgagcaatttgctctcgaatacatctactttgataaggactgagattggcatgcataacaacaaaacgatccttgatgttacacgtacggtggagcttttcaagaatgtgcagtcactgaatcacctagctaaaacctaagagatatgctcccctttgcttttctgaacatttagcgcgcacaaacgcagatagatacctgaagccaagaaagaaacaagagaaacgagccatcaaaggtggcaaacaaaaccacgtgattcaggaacgtcgtctcatagtctatatcaatttgatttttttttcccgtaaacacgtaaaagcttaagagatatacttgatagtgcagtgtcaaagagtgtgtggttttaatcttgtggtctcgtgttcaatctttaacacgctcacaatttcttcttagaaaatgtttggaaggacgtccctctccaaatcttgttttctttaacacgtactccctctgtcctataaaaaaccaacctaataccggatatgacacatcctagtactataaatttggacatacatatgtccagattcatagtactataatatatcatatctggttctagatttattttttatgggaccgagggagtaaaagctctccacgttaatatattagaataagagttcagcatctagctaatgaccatatattctgcactgtgcgtggccatggttccaccatgtgcgcaggtagttgttagttgcgtgcaccgtgcaagaaaaacaaggtagttagttgcttgatgctctcacaaatgtttaatgtaatcgcctaaagaaatcagagcatgcgacactgacatcgaagacaatgccccgttgcaatctctggaattggaatcagaatccaaaggttacaggggttgtaacagcggccacatcttttgattaagaaaccaagaagcacatgcatggccacatgtgaacaagtgagaatatacaaggataaccacaacgtgatcaaccacgtgcagaaatattttttcaagataacgtactacttgtccaaaatctatccatgtctgtctgtactctgcaggcccattcagttttcagtgatgacagatgctgttcttggcttcttaacttgtccaaacatacctcacttcaatacagagaattttcaatataattattacttattccttcgtcccataaaaaactaacctggtaccggatatagatttgtctagatttatagtattagaatgtatcacatccgatacttggttaatttttttatgagacgagagagtatccctcaactccaaaatatagtagtatgacaaagtagtacttgtggtatctaatcatagtattaggtttttatattttaagacggatgaagtacttaattgatcaagcgactgatcgaattcgtgatgacattgcagggagatcatcggcacgtactgcacagaggtaagagagctagggttcaggctatacgaggcgatatcggagagccttgggctggagggaggatacatgagggagacgttgggggagcaggagcagcacatggcggtgaactactacccacagtgcccggagccggagctcacctatggcctccccgcgcacaccgaccccaacgccctcaccatcctcctcatggacgaccaggtcgccggcctgcaggtcctcaacgacggcaagtggattgccgtcaacccgcaacccggtgctctcgtcatcaacattggcgaccaaattcaggtgactattcctctcagatcatcttaggcctcttttcatatctaagattgcaaaaacacttagacagaaaaaacgtagcaataaagtgacattaataacacaaaaaagttttagaactaacatttcgatgacacataggaagaacacaagaaattttcaagtcttaggaaacatgaggtagaacctcatgatttatttcttccaaatttttcatggattgctccattttataagggctgtgtttagttcacaccaaaattagaagtttggttgaaattggaacgatgtgacggaaaagttggaagtttatgtgtaggaaagttttgatgtgatggaaaagttggaagtttgaagaaaaagtttagaactaaacacagcgaaggttgaaccctttgatctagaagtctctgtaagaaaaatcctaatatgatgcaaattcttcaaattcctccacttctcaatttgtttcataagagggctgagaatctttcagtaaagctgcatgtagaacgtgttgatgtctgaaactctgaactctgaacattaaattgctgctggttctgtcaggcgctgagcaacgggaagtacaggagcgtgtggcaccgggcggtggtgaactccgacagggagaggatgtcggtggcgtcgttcctgtgcccgtgcaacagcgtggagctcggcccggccaagaagctcatcaccgacgactcgccggcggtgtaccggaactacacctacgacgagtactacaagaagttctggagcaggaaccttgaccaggagcactgcctcgagctgttcaggacttagctcatcgcaagctcactctacgagtcgacattaaaaccgtgaggcgaacactacacactgtgaccctgaccacctccgaattaagtttgagttctctcttggatgcctatttgctctctgttaattggaccctaaattcctcagcggcctccattcctagcttcacttataaggaaaaagagagcacaaagagatttcgttaatagccatcatagggaagtgtggattgtgttgaagctcctaatcagttggttttttgtccctggttggagggtctcttagtatcTtttttttgtggaacaactttcagtgtctgtaactctgtattccTttttttatttgcaaagggaatggcatcctttgtggttgtagaactc
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| CDS seq | atggcggcggaggcggagcagcagcaccagctgctgtcgacggccgtgcacgacacgatgccggggaagtacgtccgcccggagtcgcagcgcccgcgcctcgacctcgtcgtctccgacgcccgcatccccgtcgtcgacctcgcctcccccgaccgcgccgccgtcgtctccgccgtcggcgacgcctgtcgcacccacggcttcttccaggtggtgaaccatggcatcgatgcggcgctgatcgcgtcggtcatggaggtgggccgcgagttcttccggctgccggcggaggagaaggcgaagctctactccgacgatccggccaagaagatacggctgtcgacgagcttcaacgtgcgcaaggagacggtgcacaactggcgcgattacctccgcctccactgctatcctctccaccagttcgtccccgactggccctccaatccgccctccttcaagctatacgaggcgatatcggagagccttgggctggagggaggatacatgagggagacgttgggggagcaggagcagcacatggcggtgaactactacccacagtgcccggagccggagctcacctatggcctccccgcgcacaccgaccccaacgccctcaccatcctcctcatggacgaccaggtcgccggcctgcaggtcctcaacgacggcaagtggattgccgtcaacccgcaacccggtgctctcgcgctgagcaacgggaagtacaggagcgtgtggcaccgggcggtggtgaactccgacagggagaggatgtcggtggcgtcgttcctgtgcccgtgcaacagcgtggagctcggcccggccaagaagctcatcaccgacgactcgccggcggtgtaccggaactacacctacgacgagtactacaagaagttctggagcaggaaccttgaccaggagcactgcctcgagctgttcaggacttag
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| Protein seq | MAAEAEQQHQLLSTAVHDTMPGKYVRPESQRPRLDLVVSDARIPVVDLASPDRAAVVSAVGDACRTHGFFQVVNHGIDAALIASVMEVGREFFRLPAEEKAKLYSDDPAKKIRLSTSFNVRKETVHNWRDYLRLHCYPLHQFVPDWPSNPPSFKLYEAISESLGLEGGYMRETLGEQEQHMAVNYYPQCPEPELTYGLPAHTDPNALTILLMDDQVAGLQVLNDGKWIAVNPQPGALALSNGKYRSVWHRAVVNSDRERMSVASFLCPCNSVELGPAKKLITDDSPAVYRNYTYDEYYKKFWSRNLDQEHCLELFRT |
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| Function | Flavanone 3-dioxygenase 2 [UniProtKB/Swiss-Prot:Q8W2X5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_10g0018390 | OsNaBo_10g0018390.01 | Chr10 | 22794537 | 22800009 | + | NAM | ||
| CDS seq | atggcggcggaggcggagcagcagcaccagctgctgtcgacggccgtgcacgacacgatgccggggaagtacgtccgcccggagtcgcagcgcccgcgcctcgacctcgtcgtctccgacgcccgcatccccgtcgtcgacctcgcctcccccgaccgcgccgccgtcgtctccgccgtcggcgacgcctgtcgcacccacggcttcttccaggtggtgaaccatggcatcgatgcggcgctgatcgcgtcggtcatggaggtgggccgcgagttcttccggctgccggcggaggagaaggcgaagctctactccgacgatccggccaagaagatacggctgtcgacgagcttcaacgtgcgcaaggagacggtgcacaactggcgcgattacctccgcctccactgctatcctctccaccagttcgtccccgactggccctccaatccgccctccttcaagctatacgaggcgatatcggagagccttgggctggagggaggatacatgagggagacgttgggggagcaggagcagcacatggcggtgaactactacccacagtgcccggagccggagctcacctatggcctccccgcgcacaccgaccccaacgccctcaccatcctcctcatggacgaccaggtcgccggcctgcaggtcctcaacgacggcaagtggattgccgtcaacccgcaacccggtgctctcgcgctgagcaacgggaagtacaggagcgtgtggcaccgggcggtggtgaactccgacagggagaggatgtcggtggcgtcgttcctgtgcccgtgcaacagcgtggagctcggcccggccaagaagctcatcaccgacgactcgccggcggtgtaccggaactacacctacgacgagtactacaagaagttctggagcaggaaccttgaccaggagcactgcctcgagctgttcaggacttag
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| Protein seq | MAAEAEQQHQLLSTAVHDTMPGKYVRPESQRPRLDLVVSDARIPVVDLASPDRAAVVSAVGDACRTHGFFQVVNHGIDAALIASVMEVGREFFRLPAEEKAKLYSDDPAKKIRLSTSFNVRKETVHNWRDYLRLHCYPLHQFVPDWPSNPPSFKLYEAISESLGLEGGYMRETLGEQEQHMAVNYYPQCPEPELTYGLPAHTDPNALTILLMDDQVAGLQVLNDGKWIAVNPQPGALALSNGKYRSVWHRAVVNSDRERMSVASFLCPCNSVELGPAKKLITDDSPAVYRNYTYDEYYKKFWSRNLDQEHCLELFRT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_10g0018390 | OsNaBo_10g0018390.02 | Chr10 | 22794595 | 22800386 | + | IsoSeq | ||
| CDS seq | atggcctccccgcgcacaccgaccccaacgccctcaccatcctcctcatggacgaccaggtcgccggcctgcaggtcctcaacgacggcaagtggattgccgtcaacccgcaacccggtgctctcgtcatcaacattggcgaccaaattcagg |
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| Protein seq | MASPRTPTPTPSPSSSWTTRSPACRSSTTASGLPSTRNPVLSSSTLATKFR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr10 | 22795263 | 22798923 | + | OsNaBo_10g0018390.02 | OsNaBo_10g0018390.02,OsNaBo_10g0018390.01 | All |
| A5 | Chr10 | 22799172 | 22799767 | + | OsNaBo_10g0018390.02 | OsNaBo_10g0018390.02,OsNaBo_10g0018390.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.329131 | 20.278864 | 4.021341 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0536400 | RBH | 14.563609 | 13.809529 | 2.193705 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g39140 | RBH | 9.063556 | 9.206465 | 0.512876 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0536400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0018330 | RBH | 0.0 | 16.100824 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0018750 | RBH | 0.102979 | 11.794601 | 2.361352 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0018110 | RBH | 0.820789 | 25.242172 | 1.794535 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0018660 | RBH | 0.183592 | 0.212710 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0018390 | RBH | 0.0 | 32.416557 | 14.760002 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0344900 | RBH | 8.6055905 | 78.223278 | 5.946383 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0018290 | RBH | 0.509356 | 1.847291 | 0.695850 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0369700 | RBH | 25.555681 | 105.2855035 | 1.4252725 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0018050 | RBH | 0.636960 | 0.317560 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0017880 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0018520 | RBH | 0.0 | 41.402290 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0018090 | RBH | 0.696581 | 0.0 | 1.234399 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0018610 | RBH | 0.0 | 5.606396 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G018330 | RBH | 0.000000 | 2.344776 | 1.410783 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0001710 | SBH | 0.0 | 28.410433 | 9.604120 |
