Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_10g0016970 | OGI:10060840 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr10:21620996-21627239 | ||||||||
| Gene Symbol | OsF5H1, F5H1, OsCAld5H1, CAld5H1, CYP84A5, OsCYP84A5 | ||||||||||
| DNA seq | gtggaaagcgagatgttttcttcctcaattttcatgacaaagttttacaagaaaattcagaggctgtgcttatgtggacaggcacaccggacaccaaatttacaactttgatcttatagtctatatatcacactgtcacccttaattataccctactaatccacttattgttctggagacatggattaaattacaaaggagAaaaaaaaagaaaattaaaccagcaaaaaaaaaaaaaggcccagaggaagctaagctagccacaccaagctcctccaatggcgccacacgcgtctgaacttttaacaccatcacctgcaaaccattcttgccgtacgccgccgcggtcgccggccgccgtcagtacaaggggcaggtgagccggggcgtggcgacggcggagaggcgggtggcgcgcggcgcggtgaggccgaagatgtcggacatgtcgagctcggacggcttcatcccgtcggggagcgaccagttgaagccgtgggcgagccgcgcgacggcgagctcgagcgcgtagagccccagcgccatgcccgggcacgagcggcggccggagccgaaggggaggaactcgaagcagccgcccctgaagtcgagcccctcggcggcggcgccggcggcgaaccgcgaggggcggaacgcgtcggcgtcggggccccaggcggcgcggtcgcgggcgatggcccacacgttgaccatgacgcgggagcccctggggacggagtagccggcgacgaggcagtcggcggcggtctcgtggaggaggatggggatgggcgggtggaggcggagcgtctccttgatgacgcagcggaggaaggggagcttgtcgaggtcggactcggcgacgtcccggccgaggcccaccacggcggcgagctcctcctgcacgcggcggaggtcgtcggggctgtgcatcatctccgccatcgcccactcgatcgccgacgccaccgtctccgtccccccgaacatcacgtcctgcatgccacgtcatcacctttgcttattactcacactacttgttgtttacttattattccctccatttctaatcagtggcagaggctagaaaatttacaatgcttgggtaaatctaactacaacaagtatttgctatgaaaattttgtgttcaattctataatatatcaaattttacagtgtgttcgctgcaatgatcgcaggcggtggctccaccactgtttttaatactatttctgtttttaatagatgacactattgaattttagacacgtatttgatcatccgttttacttttaaagttttgtgcaaatgcataagttccaaatcatgcttaaagtacttttactgataaaataattcataacaaaataaatgataattattatgtatattatttaatataagatgaatggttaaatgtgtgtctgaaagtcaacggcattatctattaaaaacataactagtatatggtacttttggaaatacatttaactatttgattgttcaatttattcAaaaatttgtgaaaatataaaaaagaattaaatattatgctcaagatacatttagtgataaaataaatcacaatatcacaaataataattgactaattttttaaataagataaatgttcaagcatgtatccaacattcatgacgtcgtactAaaaaaaccggagggattaataaaagtataataatacaattttccataccaaatttacttgtgccaatcttacgtatacataggtaggaccacatattaggtagtggtagaaagaaaatttcacttttcctatcaacagatttcattttaatattatccttacatgacaaatgtacatctaagttccaacagggcaatatgttgtcattttgtcctataaaaacaagctgttgcttgtgtacattcagacaagaagtcagtgccatgttgcgtaatgcttaccagtaatgatgttataaagttttcacttttttaatgtgcaaagatgaagagacaataaaaacatcattcattttgttaccgtgagatggaaggaaatgatttggttggtctaaagtattgagcggccgttggggtcagataaatgaagattttactttggagggtgacatgcaccaatatggccagagcctatctatctggacttactatccaggtttcacatcataagccatttagagtttatcttaagtcaaactttttaacatttagtcaagtttataaaaaaattagcaacatttataatacaaaattagttttcattaaatctatcatttactatatttttatatgtttgctttgttttaaaaatgcttttacgttttttcctataaacttaattagattagaataattttgactagccgaaaacaatttataatgtgaaacatagggagtaggttaaaagggagatgcgatgatggtgacatacatagaagttcaataggttggttcatgtttaatttttcaattattggagaaaggggtcttaaaagttgaaaatgatgttgcgtacgttcctaggtgttattacgtgatgtatttcgatcccAaaaaaaaacaatggaggtactaagtgcaaaatgcattcatgttaatatgtgctctccaatcgttaaaacatggtaatagacagatgaatgaattcactattttcatggttttataaaattatcttaatgccaaaaaaatcaatgagaaattttaatttttttaaagaactaaaataataaaaatccaaattaactctagccacaaaaatacaccacacacacccaacagtccaacaaattacgtatgtctcctaactcatggttacttccctaacaagtacactaacatacatgatagtaatagttaggtagaaaaccaagAaaaataaacaagacatactcaccgtttgcttccctaacaagtccgttaacatacatgacagtacgtaataggttgacaaggcaaaaaaagaagacggacgcacactataacacaccagcgaaagatcatttatactttaggtctaattcaaatagttaacatgtaagtacaatttattacaaacgaattaattgataaagacaagaatatataggtaccaaatcaaaataccccttgaacacacctacagcctaccggggttgttttcttggcttttaagacgtacgagttgttcgttcagtcaaagagtcgtcagatttgctagccaagagtggaaagagactcgtacacgagagagacggctagctatagctcagtagcttgccacatcatgcatacgcggagaataagcctggaaatgaaatcgatcaccggccgccggcgccggagaagacccgccgccggccggcgttggtcaggctcgtgctctgactttaatttgagcctcaagctaggttggctgttgcgccaagcgactgtaagattattcgtgtgtgcaaatatccagtcgttctaccagcaagtcaaaacacttattcagtctaccactgaaaattcctatataagttcgtttaaaatataggttttttttttgaaaaaggagatatatattacacgctgaaaacatccacatctaaaagatgtgaaataaaattagagctgtcatcctaccagattagcttctacctttattcgctaaaaaaggctaacactatagttacttctagctgtatccgatatactactatatcaaaaaagAaaaaaagaaaaagagagagacaatttctagccacgtaactagacacgtatatatccgggtactctctctgtgcttgtaaaggaagtcgtttaggactgtttttaagtcaaatcttaggaatataaatcatgaataactctcaagttgttgagtttgaaaatgtaaaaattatatgaatagatttgtcttgaaaaatattttcataaaagtatacatatatcactttttaatagatatttttatagaaacaagaaatcaaagttgtattttggagaccgtatcgttgttcaaaacgactttctttacgagtacggaggaagtacatgggtaggattggatattttatacaacggagggataagtacaaagctatttttactacttcctccgagtacgtgctactccataaaattctcggaatattttactacccgtatattgaaatatgggtataaataatcataggttaatgccgtatctgacggtgtcgatctcctcgggaacagtcgacaatgcttatgtaagtgagttgactgcctgtagaagtgcagatacattgcgagggatgcatcaaggagggccactgtattctacactaaaattaattactcctcaaatctagcatttcattgagtggctttaatttgcagggcttaatctatgatccatgatgcatacgtggcgccatctaacggttgatcatatcgattcacctgcaaacgaggcgaacacacacatggactgcacatggtgttcatgtcaactataccaggagagatctctgccctgtcaaataatctacacggatcaagataatttgcctgacttaatcgcctaaaataaaatgatatattacctgactaataatccggccccgtacactactgttgctgatttgtacgcgtatttatagcgtacagttgtgtttgcgtcagatgaatttatcatgtttaattgtcagagtttaagatatatattactactccatactgctgtgctgtgtaagagtagttacaatagcaggctataagctaactataaatatattttaaagagataaagcaagagagagaagagcagcgggctccaaatttatagccagctgcagcacgaactctaagacgtaatgtgtgtatgacaggtgagactagatattaatagtatagtaagcaactattgtataaattagctattatattggctatagatgatttagagctaatagttggctatactattaaacttgctctaaatcggtgaatcattaattccagtaattttacggatttggtgttgcctaatttcgatcgggttttatcttgatcggccgggaggagtaagtggtaattaatcattaccgtgatagagagattaagttggtgaaaaatttggcagtaattaattactagtaggttgtcaactgcacgtaccatgatgatggccttgatgttgtcgcgggtgaggcggagcgtgttctgcaggtcgtcggccccgtcgccggcggcggcggcggcggcggcggccttgccggcgtgcggcttggcctcggcgaggaacgcgagcatgtcgtcgaccatgtcggcgtcggcgtcgtcggggttcttgccgcgctccatgtgctcgtcgatgatcttgtcgatgaacctgtcgagcgcggtgcgcgccgcgacgaggcgggcgttgatgccgttggtgtccgcccagctgagccaggggatgaagtcgccgatgttgaacgcgccgaacagcttggagaactcctggaggatggcgatgaactcgtcgtgcccctcgccgtcgcgcgtgccgaacgcggcgcggaagatgacgttcttggtgaggttgaagatgagctcgccgaggttgacggcggcctcgccgcgcgacgccgccacggcgcgcacgagcgccgcggactcgtcgcgcacggcgagccacgtctcggcgcggcgccggctgaagagcttcaccacgcacagcttcctcatctggcgccagaagggcccgtagtgcgcgaacgccatgtccgcgcggtcgtaggtgaggtaggcgatcgccgtggtcgccggcctgttcgagaacgcgccgtcctgcgcctggagcacctcgcgcgcgtactccggcgtcgacacggcgaacgcgtggagccggccgagccggaggtgcatcaggccgccgtactccttcgccagcgctgccaggccgcggtgcgtcagctggtccatcatcgccatgttgccgacgatcggcagcggcttcggccccggcgggaacggcgccgcgcgccgccgctgcatccgcatgattaggacggccaccgtgacgacgatcgccaggctcagaggatcctgaagccactccatggtgaacttcaccatgtccgccatggatgacacaccacacaaacttaaattcctttcAaaacaaaaataatattctagaattttggccctattttgggttgtgtttgagatgttttttatgtttataagcgctcttggtgtagagctgaggagaaagttaggatgatccagggtttatat
More
|
||||||||||
| CDS seq | atggcggacatggtgaagttcaccatggagtggcttcaggatcctctgagcctggcgatcgtcgtcacggtggccgtcctaatcatgcggatgcagcggcggcgcgcggcgccgttcccgccggggccgaagccgctgccgatcgtcggcaacatggcgatgatggaccagctgacgcaccgcggcctggcagcgctggcgaaggagtacggcggcctgatgcacctccggctcggccggctccacgcgttcgccgtgtcgacgccggagtacgcgcgcgaggtgctccaggcgcaggacggcgcgttctcgaacaggccggcgaccacggcgatcgcctacctcacctacgaccgcgcggacatggcgttcgcgcactacgggcccttctggcgccagatgaggaagctgtgcgtggtgaagctcttcagccggcgccgcgccgagacgtggctcgccgtgcgcgacgagtccgcggcgctcgtgcgcgccgtggcggcgtcgcgcggcgaggccgccgtcaacctcggcgagctcatcttcaacctcaccaagaacgtcatcttccgcgccgcgttcggcacgcgcgacggcgaggggcacgacgagttcatcgccatcctccaggagttctccaagctgttcggcgcgttcaacatcggcgacttcatcccctggctcagctgggcggacaccaacggcatcaacgcccgcctcgtcgcggcgcgcaccgcgctcgacaggttcatcgacaagatcatcgacgagcacatggagcgcggcaagaaccccgacgacgccgacgccgacatggtcgacgacatgctcgcgttcctcgccgaggccaagccgcacgccggcaaggccgccgccgccgccgccgccgccggcgacggggccgacgacctgcagaacacgctccgcctcacccgcgacaacatcaaggccatcatcatggacgtgatgttcggggggacggagacggtggcgtcggcgatcgagtgggcgatggcggagatgatgcacagccccgacgacctccgccgcgtgcaggaggagctcgccgccgtggtgggcctcggccgggacgtcgccgagtccgacctcgacaagctccccttcctccgctgcgtcatcaaggagacgctccgcctccacccgcccatccccatcctcctccacgagaccgccgccgactgcctcgtcgccggctactccgtccccaggggctcccgcgtcatggtcaacgtgtgggccatcgcccgcgaccgcgccgcctggggccccgacgccgacgcgttccgcccctcgcggttcgccgccggcgccgccgccgaggggctcgacttcaggggcggctgcttcgagttcctccccttcggctccggccgccgctcgtgcccgggcatggcgctggggctctacgcgctcgagctcgccgtcgcgcggctcgcccacggcttcaactggtcgctccccgacgggatgaagccgtccgagctcgacatgtccgacatcttcggcctcaccgcgccgcgcgccacccgcctctccgccgtcgccacgccccggctcacctgccccttgtactga
More
|
||||||||||
| Protein seq | MADMVKFTMEWLQDPLSLAIVVTVAVLIMRMQRRRAAPFPPGPKPLPIVGNMAMMDQLTHRGLAALAKEYGGLMHLRLGRLHAFAVSTPEYAREVLQAQDGAFSNRPATTAIAYLTYDRADMAFAHYGPFWRQMRKLCVVKLFSRRRAETWLAVRDESAALVRAVAASRGEAAVNLGELIFNLTKNVIFRAAFGTRDGEGHDEFIAILQEFSKLFGAFNIGDFIPWLSWADTNGINARLVAARTALDRFIDKIIDEHMERGKNPDDADADMVDDMLAFLAEAKPHAGKAAAAAAAAGDGADDLQNTLRLTRDNIKAIIMDVMFGGTETVASAIEWAMAEMMHSPDDLRRVQEELAAVVGLGRDVAESDLDKLPFLRCVIKETLRLHPPIPILLHETAADCLVAGYSVPRGSRVMVNVWAIARDRAAWGPDADAFRPSRFAAGAAAEGLDFRGGCFEFLPFGSGRRSCPGMALGLYALELAVARLAHGFNWSLPDGMKPSELDMSDIFGLTAPRATRLSAVATPRLTCPLY |
||||||||||
| Function | Cytochrome P450 84A1 [UniProtKB/Swiss-Prot:Q42600] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_10g0016970 | OsNaBo_10g0016970.01 | Chr10 | 21621017 | 21627239 | - | NAM | ||
| CDS seq | atggcggacatggtgaagttcaccatggagtggcttcaggatcctctgagcctggcgatcgtcgtcacggtggccgtcctaatcatgcggatgcagcggcggcgcgcggcgccgttcccgccggggccgaagccgctgccgatcgtcggcaacatggcgatgatggaccagctgacgcaccgcggcctggcagcgctggcgaaggagtacggcggcctgatgcacctccggctcggccggctccacgcgttcgccgtgtcgacgccggagtacgcgcgcgaggtgctccaggcgcaggacggcgcgttctcgaacaggccggcgaccacggcgatcgcctacctcacctacgaccgcgcggacatggcgttcgcgcactacgggcccttctggcgccagatgaggaagctgtgcgtggtgaagctcttcagccggcgccgcgccgagacgtggctcgccgtgcgcgacgagtccgcggcgctcgtgcgcgccgtggcggcgtcgcgcggcgaggccgccgtcaacctcggcgagctcatcttcaacctcaccaagaacgtcatcttccgcgccgcgttcggcacgcgcgacggcgaggggcacgacgagttcatcgccatcctccaggagttctccaagctgttcggcgcgttcaacatcggcgacttcatcccctggctcagctgggcggacaccaacggcatcaacgcccgcctcgtcgcggcgcgcaccgcgctcgacaggttcatcgacaagatcatcgacgagcacatggagcgcggcaagaaccccgacgacgccgacgccgacatggtcgacgacatgctcgcgttcctcgccgaggccaagccgcacgccggcaaggccgccgccgccgccgccgccgccggcgacggggccgacgacctgcagaacacgctccgcctcacccgcgacaacatcaaggccatcatcatggacgtgatgttcggggggacggagacggtggcgtcggcgatcgagtgggcgatggcggagatgatgcacagccccgacgacctccgccgcgtgcaggaggagctcgccgccgtggtgggcctcggccgggacgtcgccgagtccgacctcgacaagctccccttcctccgctgcgtcatcaaggagacgctccgcctccacccgcccatccccatcctcctccacgagaccgccgccgactgcctcgtcgccggctactccgtccccaggggctcccgcgtcatggtcaacgtgtgggccatcgcccgcgaccgcgccgcctggggccccgacgccgacgcgttccgcccctcgcggttcgccgccggcgccgccgccgaggggctcgacttcaggggcggctgcttcgagttcctccccttcggctccggccgccgctcgtgcccgggcatggcgctggggctctacgcgctcgagctcgccgtcgcgcggctcgcccacggcttcaactggtcgctccccgacgggatgaagccgtccgagctcgacatgtccgacatcttcggcctcaccgcgccgcgcgccacccgcctctccgccgtcgccacgccccggctcacctgccccttgtactga
More
|
|||||||
| Protein seq | MADMVKFTMEWLQDPLSLAIVVTVAVLIMRMQRRRAAPFPPGPKPLPIVGNMAMMDQLTHRGLAALAKEYGGLMHLRLGRLHAFAVSTPEYAREVLQAQDGAFSNRPATTAIAYLTYDRADMAFAHYGPFWRQMRKLCVVKLFSRRRAETWLAVRDESAALVRAVAASRGEAAVNLGELIFNLTKNVIFRAAFGTRDGEGHDEFIAILQEFSKLFGAFNIGDFIPWLSWADTNGINARLVAARTALDRFIDKIIDEHMERGKNPDDADADMVDDMLAFLAEAKPHAGKAAAAAAAAGDGADDLQNTLRLTRDNIKAIIMDVMFGGTETVASAIEWAMAEMMHSPDDLRRVQEELAAVVGLGRDVAESDLDKLPFLRCVIKETLRLHPPIPILLHETAADCLVAGYSVPRGSRVMVNVWAIARDRAAWGPDADAFRPSRFAAGAAAEGLDFRGGCFEFLPFGSGRRSCPGMALGLYALELAVARLAHGFNWSLPDGMKPSELDMSDIFGLTAPRATRLSAVATPRLTCPLY
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_10g0016970 | OsNaBo_10g0016970.02 | Chr10 | 21620996 | 21621286 | - | IsoSeq | ||
| CDS seq | cgtgtggcgccattggaggagcttggtgtggctagcttagcttcctctgggcctttttttttttttgctggtttaattttcttttttttTctcctttgtaatttaatccatgtctccagaacaataagtggattagtagggtat |
|||||||
| Protein seq | RVAPLEELGVASLASSGPFFFFAGLIFFFFLLCNLIHVSRTISGLVGY |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.455218 | 48.559174 | 1.762570 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0512400 | RBH | 2.427591 | 4.026419 | 2.135809 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g36848 | RBH | 1.607784 | 2.652213 | 0.538452 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0512400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0017000 | RBH | 0.0 | 2.243131 | 0.625539 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0017290 | RBH | 0.254302 | 1.278629 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0016740 | RBH | 0.208108 | 4.139520 | 0.328258 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0017220 | RBH | 0.035234 | 0.058287 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0016980 | RBH | 2.305666 | 29.201782 | 1.940765 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0325500 | RBH | 5.8104365 | 20.7634495 | 0.095803 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0016900 | RBH | 0.163292 | 0.277642 | 0.159506 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0348500 | RBH | 3.422122 | 48.922905 | 0.038949 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0016680 | RBH | 0.122914 | 0.331062 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0016530 | RBH | 0.495677 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0017060 | RBH | 1.161196 | 19.810345 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0016740 | RBH | 0.091341 | 0.0 | 1.011462 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0017150 | RBH | 0.0 | 2.741558 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G016790 | RBH | 0.148916 | 0.439875 | 0.541582 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0000990 | RBH | 0.0 | 0.0 | 0.0 |
