Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_10g0014990 | OGI:10057340 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr10:20094632-20096112 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | accacttcttaaattccactttatagattcatctgttacattctgatctaaacattggaactcgAaaaaacagccccatgataacgcaacgaaaacactagattccatctggaagttcttcatcagcattattcAagggccaaaacatatgattttatcagaagtgacacagtgacatacattcctcaagcagatcatggatttgaactaggtgttccttcaagggacaattcaccagcaatcttctcccaagccactttagcatcacctttcacaagaaggttcatcttggcgacaacatcctttgcctctgcagatttcccacccttcaccaatccctcaACcAaacccttgactgcctcaaagggtggtgctgccttcatcgcAaagcagctcttacaaatccatagagcatcatcaagcctctctttctccaccaagctcctgaacagcaccacatatgtttgcgaatgcgctgacacacccaagtcactcctaccctccctcctcttcatcactttcatcctcttgaacacacgcatggctgacccaacattcccctccttgcagtacccctgcacaagcgcattgtacgtaaGgtaattcggcgccacatcctttgactccatggcatcAagcagctcctcccccttgaaggtttcacccttcttggcaaaccactgtatccggcagttgtaagtcacaacattcagctccagcttcttcgcgctgatctccttcagtagcttctcaaaCccctcctcatcgccctgcgcagaatagccagctagcacggtgttgtatgacacgatgtcaggggccgggcggtgcttcagcttcttggccatttcgccgagcagcttgcgggcggcggcgagctcggagttcttcaccagagcgtggaggagcacgttgtgggaggcgcgtccgggggcgacgccgaaggaggtctccgcgcaggcgagggtggacttgacgtcgtcgacgcggccggcgcggAagagcgcggagaggagCGCcgagagggagacgtcggagcgggcggcgggcgcggagtcggagaacgcgcggagggcgtcgtcGgggcccgggaagagggagatggcgcgggcgaggaggcccggggacgccggggcggagtcgaggagggcgcggaggagcgaggcggcgagatccgggcggcggaggcgcgcgaggcgggaggcggcgaGggagaagagcgggcgggagccgtggaggcgcgggtagtcgtcggggcgggagagcgcggtggcgacgagggagtggatgcgggccgggtcggcctcgccgcggacggcgagctggaggtcgaggatgggggagcgcgtggaggcGggggtggtgggggtcgaggcgggcggcggcgggtgatcgacgtcGgggagcgcggagaagcggcggaggaggtgggcggcggggagcgggtgggggtggcggtggcggcggaggagggaagccat
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| CDS seq | atggcttccctcctccgccgccaccgccacccccacccgctccccgccgcccacctcctccgccgcttctccgcgctcccCgacgtcgatcacccgccgccgcccgcctcgacccccaccaccccCgcctccacgcgctcccccatcctcgacctccagctcgccgtccgcggcgaggccgacccggcccgcatccactccctcgtcgccaccgcgctctcccgccccgacgactacccgcgcctccacggctcccgcccgctcttctccCtcgccgcctcccgcctcgcgcgcctccgccgcccggatctcgccgcctcgctcctccgcgccctcctcgactccgccccggcgtccccgggcctcctcgcccgcgccatctccctcttcccgggcccCgacgacgccctccgcgcgttctccgactccgcgcccgccgcccgctccgacgtctccctctcgGCGctcctctccgcgctctTccgcgccggccgcgtcgacgacgtcaagtccaccctcgcctgcgcggagacctccttcggcgtcgcccccggacgcgcctcccacaacgtgctcctccacgctctggtgaagaactccgagctcgccgccgcccgcaagctgctcggcgaaatggccaagaagctgaagcaccgcccggcccctgacatcgtgtcatacaacaccgtgctagctggctattctgcgcagggcgatgaggagggGtttgagaagctactgaaggagatcagcgcgaagaagctggagctgaatgttgtgacttacaactgccggatacagtggtttgccaagaagggtgaaaccttcaagggggaggagctgctTgatgccatggagtcaaaggatgtggcgccgaattacCttacgtacaatgcgcttgtgcaggggtactgcaaggaggggaatgttgggtcagccatgcgtgtgttcaagaggatgaaagtgatgaagaggagggagggtaggagtgacttgggtgtgtcagcgcattcgcaaacatatgtggtgctgttcaggagcttggtggagaaagagaggcttgatgatgctctatggatttgtaagagctgcttTgcgatgaaggcagcaccaccctttgaggcagtcaagggttTgGTtgagggattggtgaagggtgggaaatctgcagaggcaaaggatgttgtcgccaagatgaaccttcttgtgaaaggtgatgctaaagtggcttgggagaagattgctggtgaattgtcccttgaaggaacacctagttcaaatccatga
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| Protein seq | MASLLRRHRHPHPLPAAHLLRRFSALPDVDHPPPPASTPTTPASTRSPILDLQLAVRGEADPARIHSLVATALSRPDDYPRLHGSRPLFSLAASRLARLRRPDLAASLLRALLDSAPASPGLLARAISLFPGPDDALRAFSDSAPAARSDVSLSALLSALFRAGRVDDVKSTLACAETSFGVAPGRASHNVLLHALVKNSELAAARKLLGEMAKKLKHRPAPDIVSYNTVLAGYSAQGDEEGFEKLLKEISAKKLELNVVTYNCRIQWFAKKGETFKGEELLDAMESKDVAPNYLTYNALVQGYCKEGNVGSAMRVFKRMKVMKRREGRSDLGVSAHSQTYVVLFRSLVEKERLDDALWICKSCFAMKAAPPFEAVKGLVEGLVKGGKSAEAKDVVAKMNLLVKGDAKVAWEKIAGELSLEGTPSSNP |
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| Function | Pentatricopeptide repeat-containing protein At1g61870, mitochondrial [UniProtKB/Swiss-Prot:Q8LE47] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_10g0014990 | OsNaBo_10g0014990.01 | Chr10 | 20094632 | 20096112 | - | NAM | ||
| CDS seq | atggcttccctcctccgccgccaccgccacccccacccgctccccgccgcccacctcctccgccgcttctccgcgctcccCgacgtcgatcacccgccgccgcccgcctcgacccccaccaccccCgcctccacgcgctcccccatcctcgacctccagctcgccgtccgcggcgaggccgacccggcccgcatccactccctcgtcgccaccgcgctctcccgccccgacgactacccgcgcctccacggctcccgcccgctcttctccCtcgccgcctcccgcctcgcgcgcctccgccgcccggatctcgccgcctcgctcctccgcgccctcctcgactccgccccggcgtccccgggcctcctcgcccgcgccatctccctcttcccgggcccCgacgacgccctccgcgcgttctccgactccgcgcccgccgcccgctccgacgtctccctctcgGCGctcctctccgcgctctTccgcgccggccgcgtcgacgacgtcaagtccaccctcgcctgcgcggagacctccttcggcgtcgcccccggacgcgcctcccacaacgtgctcctccacgctctggtgaagaactccgagctcgccgccgcccgcaagctgctcggcgaaatggccaagaagctgaagcaccgcccggcccctgacatcgtgtcatacaacaccgtgctagctggctattctgcgcagggcgatgaggagggGtttgagaagctactgaaggagatcagcgcgaagaagctggagctgaatgttgtgacttacaactgccggatacagtggtttgccaagaagggtgaaaccttcaagggggaggagctgctTgatgccatggagtcaaaggatgtggcgccgaattacCttacgtacaatgcgcttgtgcaggggtactgcaaggaggggaatgttgggtcagccatgcgtgtgttcaagaggatgaaagtgatgaagaggagggagggtaggagtgacttgggtgtgtcagcgcattcgcaaacatatgtggtgctgttcaggagcttggtggagaaagagaggcttgatgatgctctatggatttgtaagagctgcttTgcgatgaaggcagcaccaccctttgaggcagtcaagggttTgGTtgagggattggtgaagggtgggaaatctgcagaggcaaaggatgttgtcgccaagatgaaccttcttgtgaaaggtgatgctaaagtggcttgggagaagattgctggtgaattgtcccttgaaggaacacctagttcaaatccatga
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| Protein seq | MASLLRRHRHPHPLPAAHLLRRFSALPDVDHPPPPASTPTTPASTRSPILDLQLAVRGEADPARIHSLVATALSRPDDYPRLHGSRPLFSLAASRLARLRRPDLAASLLRALLDSAPASPGLLARAISLFPGPDDALRAFSDSAPAARSDVSLSALLSALFRAGRVDDVKSTLACAETSFGVAPGRASHNVLLHALVKNSELAAARKLLGEMAKKLKHRPAPDIVSYNTVLAGYSAQGDEEGFEKLLKEISAKKLELNVVTYNCRIQWFAKKGETFKGEELLDAMESKDVAPNYLTYNALVQGYCKEGNVGSAMRVFKRMKVMKRREGRSDLGVSAHSQTYVVLFRSLVEKERLDDALWICKSCFAMKAAPPFEAVKGLVEGLVKGGKSAEAKDVVAKMNLLVKGDAKVAWEKIAGELSLEGTPSSNP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.238957 | 11.622415 | 5.728099 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0484900 | RBH | 2.420789 | 3.047197 | 5.136811 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g34370 | RBH | 1.731027 | 2.139928 | 1.398820 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0484900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0015120 | RBH | 0.520549 | 9.782928 | 3.759485 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0015360 | RBH | 0.115022 | 4.081116 | 2.562680 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0014800 | RBH | 0.715623 | 8.459013 | 8.998959 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0015140 | RBH | 0.112289 | 0.308080 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0015060 | RBH | 0.901412 | 8.550793 | 11.288746 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0302400 | RBH | 2.571378 | 7.242636 | 2.5886925 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015000 | RBH | 0.124718 | 1.096075 | 1.306731 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0325100 | RBH | 2.219955 | 5.0686585 | 6.683949 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0014730 | RBH | 0.252578 | 0.188200 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0014650 | RBH | 0.269957 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0016090 | SBH | 1.382853 | 1.473791 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0014760 | RBH | 0.644494 | 0.0 | 0.979655 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0015310 | RBH | 0.0 | 5.048280 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G014940 | RBH | 0.060910 | 4.368486 | 2.092500 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0014920 | RBH | 1.409044 | 0.0 | 4.416099 |
