Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_10g0012680 | OGI:10051790 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr10:17875740-17879601 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggacaaCcctCcgccgctgccgaacaataagAaccctgactctgagTtgaacaatgagattgcagaggggCaaCcaccgcagccagcccctgcgccAggtatttCttttaatctctcccctgggaacgaatgtcatcactttcTcgtttgtacTacTtctttaatttttCatatatataatgctataattaacttttgtcaccatattttgatcattcggtttattaaaaACTttTaaaaaactgaaaagAaataagtaatacttaaaatttctttgggataaattaaaccacaacAaaaaaaataTctaTtacatactagaagtccattttaacatcatAtaaacgcttacaaactgctacatgacctCctatatataaacgctcgtagaataccatattgcactctaattaattataaaacgtatcaagtttttcttaaaaaaataactattgatatccatttAaatgatggacttgttaTtttagtacattatatctcatactagtcaccaactaGatctattaaaaatcAaactcttctctcccgttcaaagTgtcgtaccccaCatactacttaggaacacgtacgtttacttctccctctcttgaaCctcagcatttcatgcctcttCcctatttctcgtatattagttaagaTttttctttaatttcttcgcttctactagtatctcacatgaggctaaacggccgggcgcagctcggtggctgtggactttgtccgcatttCccaaacattatatagggAtgattaatgttttgtTGgtttaTaaattaaatgatctaTtttaactaacaaTttaatagaaaaaacaatctatagttaaatagctaaatgatcataattacaattcTaaagTtaTatctaattcttaattttgtttgaactggTgttttataattagatagctaaataaagacctatattacccatattttactataaaaaatacgtcatttgaatagacatttctcctttacatggcaaccaaataacatCtaattttcaaTtttttgggactgTttatttatttggttttatttataactaataagtaaaTtaggttcagtGttacccatttcgctatataaaatttgaaatacataatttaaacatagaccaataacaaaCcaacaatgaaacattacAaaatttggcaatatttattatgtcatcctaaattattctacataacagaaattagaaaaatcacagccaccatatgtcacaactttgagcgctattaagtccccacgtgtcatgttttaaaaattagaaaagaaacttcaaaatTAaatggaaaaaaacatctttccacttaaatcgatgaCctattatattcagccattaaatcttcttttagaaaaatcataacatgCgacatgtcacaccttaaaaattactagaaagaaatcatagaaatatgtgaataaaaaaaaTcattTgatcaTtaaatttcacctaatcatttagaaaaattggagaaaaagagCcccctccatctctccccCacatgcgcaaaagcactacccaccCTtCccctatgtggTttgagctttgtgctcttcattcctctcccCTcccTatcttttaggccctatcAaactgAaaaaagctataaatagttataagctatacgCCcgatttctaatatagttgttgcaatcaaaccaacAaagtaagatccatacgcctatatttcactatgtaagAaatataacatttgggaatggtcggcacatgcaTttcgcatgcaaaccaaatagcaataaaatattataaaaaagtatcaatgaacattacgtttattAtaatccatcttatagtaatctgactcAataatctaaattacaataatcttaagttgaaacaaatatggccttagtttagaacatgtgtttGgctaTttttttcataggatggtcccAtatgagagatggaatggtttcaTtttttagAaaggggaaagtgtggcccATatataatgagagaggaagtgagttgaaatgttccgtacaagTttttaggtatgaaattaaaccTgattgggaaaggtgatatgggataataTttcttttcatgaattatctcatatcacctttcccaatccgaacgtagtaaaaaatgagttcaccctaacTttatccatcgcgtctctccagccaaacatACacggaggatcagttaaacacatacggagggatcagttctaacttctaatctataacatttcAattttcAaaaacgattcatgctcagggTttatagaatatagtaagatttatgctactacaaatggttgacttgtagactgtcagagatctcccgggagtggccatttatattagcgtgagttcgtaacaaaagaatcatgaccataatgTttatcagttaatttgcagaacattctAcgttttacaaTattgttgacatgcgctaaaaataaaactgcaggacatgtggcagtgcccatccctgaaccgcgatgcctcctttacaaggtCcccaagaaaatttggaagatagacgaagacatgcacaagccgacttatatctctatcggtccttatcgctacggtgaaaacgggttggacaacagatcgcaggtatggaaggaatggtgcgaaaatgaagtggtgaagaagctcacacagcaaggtaggggtacggcgctacaacagatcaacgatgtggtaaCggatcaagtgaagaaTgactatgacaaaagatcgttcTcgttaggcgtggacgacgaagctttcaaaaagatgatgataaccgacggaTgcttcctactactgacgaccttacatgataccagcagtcagtcggagcctgagccacagcgtcctgtagcaTctaatacttggcgaagcttttgctgtcttttcgaaagtaatCctacagcagatgaacaaaTtgcaCccgttccaccaactgttattgatccgaacagtattccaaacctgtgggaTaactgcttccggtggaatgacatcttgctctaTgggaaccagctccccttccTtgttgtgcgagaaatctacaagcttcttcaccccggcgtagaccctaatcagaaagtcggcaaggtcttcgccgattcaatgctggcacgctacacgaggaggaagTtgaccaatccgggcaacgccgacagcgtcctCcacctgtgccacaaactgctggcgccaacgccggacccgagccggaatggaggcggcgacggcgtcgtcaagacgggacagtggcggcgggcgacagaatacaggaatctgCgggtgaaattcaagaagagagagatcagcagcgagggcaaggcgcagtgcatcttggacgtcaaggtcgtctgctgcaatgtggtaaagaTaccttcgTttgacctgaacCcggagagctggaggctgctgcgaaacctgatgctgctggagaatatgaacaaacacctcggcggccatgtcacctcTtactgccacttcatatcgcagctggcgtgtaccggcgcggacgtcagcctcctcagggaaaagggtatcatcgtgcacggtgaggctagcgacgagagggcggcCcagaagctaTgcaatctctgtgatgaaatcaTttatgatCccacacacgaCtacctcaagtcagCtTGGgacAagcTggagaagcactgCcggcaccggggtggcttgtgtgggcgaaaatgttcggctacaAGgAttggaagaatccgctggtttggatggctacccttgccgccctcgccctacttgtgTgtgccatattacagacgatgtacaccATcaagacataccaggatcaggcgaaacaccgcgcgcggacgtagctaA
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| CDS seq | atggacaaCcctCcgccgctgccgaacaataagAaccctgactctgagTtgaacaatgagattgcagaggggCaaCcaccgcagccagcccctgcgccAggacatgtggcagtgcccatccctgaaccgcgatgcctcctttacaaggtCcccaagaaaatttggaagatagacgaagacatgcacaagccgacttatatctctatcggtccttatcgctacggtgaaaacgggttggacaacagatcgcaggtatggaaggaatggtgcgaaaatgaagtggtgaagaagctcacacagcaaggtaggggtacggcgctacaacagatcaacgatgtggtaaCggatcaagtgaagaaTgactatgacaaaagatcgttcTcgttaggcgtggacgacgaagctttcaaaaagatgatgataaccgacggaTgcttcctactactgacgaccttacatgataccagcagtcagtcggagcctgagccacagcgtcctgtagcaTctaatacttggcgaagcttttgctgtcttttcgaaagtaatCctacagcagatgaacaaaTtgcaCccgttccaccaactgttattgatccgaacagtattccaaacctgtgggaTaactgcttccggtggaatgacatcttgctctaTgggaaccagctccccttccTtgttgtgcgagaaatctacaagcttcttcaccccggcgtagaccctaatcagaaagtcggcaaggtcttcgccgattcaatgctggcacgctacacgaggaggaagTtgaccaatccgggcaacgccgacagcgtcctCcacctgtgccacaaactgctggcgccaacgccggacccgagccggaatggaggcggcgacggcgtcgtcaagacgggacagtggcggcgggcgacagaatacaggaatctgCgggtgaaattcaagaagagagagatcagcagcgagggcaaggcgcagtgcatcttggacgtcaaggtcgtctgctgcaatgtggtaaagaTaccttcgTttgacctgaacCcggagagctggaggctgctgcgaaacctgatgctgctggagaatatgaacaaacacctcggcggccatgtcacctcTtactgccacttcatatcgcagctggcgtgtaccggcgcggacgtcagcctcctcagggaaaagggtatcatcgtgcacggtgaggctagcgacgagagggcggcCcagaagctaTgcaatctctgtgatgaaatcaTttatgatCccacacacgaCtacctcaagtcagCtTGGgacAagcTggagaagcactgCcggcaccggggtggcttgtgtgggcgaaaatgttcggctacaAGgAttggaagaatccgctggtttggatggctacccttgccgccctcgccctacttgtgTgtgccatattacagacgatgtacaccATcaagacataccaggatcaggcgaaacaccgcgcgcggacgtagctaA
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| Protein seq | MDNPPPLPNNKNPDSELNNEIAEGQPPQPAPAPGHVAVPIPEPRCLLYKVPKKIWKIDEDMHKPTYISIGPYRYGENGLDNRSQVWKEWCENEVVKKLTQQGRGTALQQINDVVTDQVKNDYDKRSFSLGVDDEAFKKMMITDGCFLLLTTLHDTSSQSEPEPQRPVASNTWRSFCCLFESNPTADEQIAPVPPTVIDPNSIPNLWDNCFRWNDILLYGNQLPFLVVREIYKLLHPGVDPNQKVGKVFADSMLARYTRRKLTNPGNADSVLHLCHKLLAPTPDPSRNGGGDGVVKTGQWRRATEYRNLRVKFKKREISSEGKAQCILDVKVVCCNVVKIPSFDLNPESWRLLRNLMLLENMNKHLGGHVTSYCHFISQLACTGADVSLLREKGIIVHGEASDERAAQKLCNLCDEIIYDPTHDYLKSAWDKLEKHCRHRGGLCGRKCSATRIGRIRWFGWLPLPPSPYLCVPYYRRCTPSRHTRIRRNTARGRS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_10g0012680 | OsNaBo_10g0012680.01 | Chr10 | 17875740 | 17879601 | + | NAM | ||
| CDS seq | atggacaaCcctCcgccgctgccgaacaataagAaccctgactctgagTtgaacaatgagattgcagaggggCaaCcaccgcagccagcccctgcgccAggacatgtggcagtgcccatccctgaaccgcgatgcctcctttacaaggtCcccaagaaaatttggaagatagacgaagacatgcacaagccgacttatatctctatcggtccttatcgctacggtgaaaacgggttggacaacagatcgcaggtatggaaggaatggtgcgaaaatgaagtggtgaagaagctcacacagcaaggtaggggtacggcgctacaacagatcaacgatgtggtaaCggatcaagtgaagaaTgactatgacaaaagatcgttcTcgttaggcgtggacgacgaagctttcaaaaagatgatgataaccgacggaTgcttcctactactgacgaccttacatgataccagcagtcagtcggagcctgagccacagcgtcctgtagcaTctaatacttggcgaagcttttgctgtcttttcgaaagtaatCctacagcagatgaacaaaTtgcaCccgttccaccaactgttattgatccgaacagtattccaaacctgtgggaTaactgcttccggtggaatgacatcttgctctaTgggaaccagctccccttccTtgttgtgcgagaaatctacaagcttcttcaccccggcgtagaccctaatcagaaagtcggcaaggtcttcgccgattcaatgctggcacgctacacgaggaggaagTtgaccaatccgggcaacgccgacagcgtcctCcacctgtgccacaaactgctggcgccaacgccggacccgagccggaatggaggcggcgacggcgtcgtcaagacgggacagtggcggcgggcgacagaatacaggaatctgCgggtgaaattcaagaagagagagatcagcagcgagggcaaggcgcagtgcatcttggacgtcaaggtcgtctgctgcaatgtggtaaagaTaccttcgTttgacctgaacCcggagagctggaggctgctgcgaaacctgatgctgctggagaatatgaacaaacacctcggcggccatgtcacctcTtactgccacttcatatcgcagctggcgtgtaccggcgcggacgtcagcctcctcagggaaaagggtatcatcgtgcacggtgaggctagcgacgagagggcggcCcagaagctaTgcaatctctgtgatgaaatcaTttatgatCccacacacgaCtacctcaagtcagCtTGGgacAagcTggagaagcactgCcggcaccggggtggcttgtgtgggcgaaaatgttcggctacaAGgAttggaagaatccgctggtttggatggctacccttgccgccctcgccctacttgtgTgtgccatattacagacgatgtacaccATcaagacataccaggatcaggcgaaacaccgcgcgcggacgtagctaA
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| Protein seq | MDNPPPLPNNKNPDSELNNEIAEGQPPQPAPAPGHVAVPIPEPRCLLYKVPKKIWKIDEDMHKPTYISIGPYRYGENGLDNRSQVWKEWCENEVVKKLTQQGRGTALQQINDVVTDQVKNDYDKRSFSLGVDDEAFKKMMITDGCFLLLTTLHDTSSQSEPEPQRPVASNTWRSFCCLFESNPTADEQIAPVPPTVIDPNSIPNLWDNCFRWNDILLYGNQLPFLVVREIYKLLHPGVDPNQKVGKVFADSMLARYTRRKLTNPGNADSVLHLCHKLLAPTPDPSRNGGGDGVVKTGQWRRATEYRNLRVKFKKREISSEGKAQCILDVKVVCCNVVKIPSFDLNPESWRLLRNLMLLENMNKHLGGHVTSYCHFISQLACTGADVSLLREKGIIVHGEASDERAAQKLCNLCDEIIYDPTHDYLKSAWDKLEKHCRHRGGLCGRKCSATRIGRIRWFGWLPLPPSPYLCVPYYRRCTPSRHTRIRRNTARGRS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 2.661987 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0450000 | SBH | 0.205163 | 0.000000 | 1.328325 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g31170 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0450000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0012820 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0013030 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0012610 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0012870 | RBH | 0.0 | 0.195801 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0012620 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0269400 | RBH | 0.003867 | 0.072864 | 0.191416 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0012650 | RBH | 0.0 | 0.122910 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0289900 | RBH | 0 | 0 | 0.0518725 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0012380 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0012370 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0012780 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0012390 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0012880 | RBH | 0.0 | 2.560327 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G012730 | RBH | 0.0 | 2.654786 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0012720 | RBH | 0.0 | 0.0 | 0.0 |
