Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_10g0012260 | OGI:10050700 | 14/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr10:17448521-17453490 | ||||||||
| Gene Symbol | Orysa;DP2, DP TF | ||||||||||
| DNA seq | GATGAGACAGTACTTCACAATTACATTAGTACAATATTGAGTTTACTAAAAACCAGAAAGCTGAATCCTACAAGTTAAGTTAGGCATATGGTTTGTCAACATGCCCATCGATCTTCTACCAGTGAAACTAAACTAGACCCGCCATTTTTCCCCCATTGATCTAATGTACAGGCTCTTTCTACATGTAAAGTTACAAAAAGGGAAAATTGGGGAGTAACAAATAAACCAAGTACCTCACACCATCAACAAATCATAGTAACCCCTAATGTTCATGCTTGACACGCCCTTTAAGTATACCGGGAATAGGGGGCGATGTTGGTAGTCTAACTCCGTTTGGCCTCGCAACTTGGGGTGATTGATGATAGATAGGTGTGGttgagcactcacctccatttccaacccgggcttgcgtatcatctggttctttgccagagaaccccaatgctttcagtacaaaggaatcgtcatgcagttcaaatggagtgctgcattttcagaaacatgtgtcactcgttattcagtcatgaagatttagtagtaatcacctaattttgcaccgctcgtaaaatgcaaacagaaaaattgcagaagatgaaaagggggttcatcagctagttatataggctgatcatgacggaatgtagacacaagctaccatctcagcaaccaagcattctctttgatatcagattgattagtaaataatgatcaatggatctgcccacttttttgacaatgggctgtatgatagtcgcataggactacaagcgctgagactcattgcCAcactgcttacaaatataaggactcattgccacactgcttacaactataaggaccatagtttcaacctttcaaccaagctattagacagtagtAaatcattaagagaaattcatgaccaacaaacagAattatgcaacagaatgtcaagatttgtcaaatctcattttcctcataagggataaattcaaaacagAaaatgaatgtaattaagatcagaaaaatgactagctgtttatgcttttgtgaatagttgtttaaaactttgcatagaaaaaaTttatagtttaaaacgttgtacaaaaatagtaagaaaacctgtactaaagtgaaagttcatcaccagctgaaatttgtacgatgcatatgttagggagaacgcattagataTtcttgtcttacctattgaaatcaaaatgcaccagctgcatatcttctgatatctccacttctactgtagcatgaggacgtgtctacaggAaaaaaaaaagctgtcagtctgtcacttagtctgcgattataaaataaataaatgatggcagaatatacacaatAaaattgaaaagcaaTtgcatggaaagttaagctgtaaagaaaacggaaacaGggaaagcaaagccgcaaagttgaccaagaatgctgctcctacaactaattgatggttcttgcaattaatacttcataaaatatattcaattcataattagctaagaatatgcacatgtctaatggtactgctccgaaattttggacaataattatataagtcataggtccaaccaggtctggcttaagatataacaggatttgaacttggcatcccagtgtcattatccaaatggtctagaatctcaaaattagggtaccaaaagcagattggccaaatattacaagccataagtggacactagAaattggcctgactaggtgatttcgttcattcattgtcgttttgttttgttttcacaagggctgaagtaacacctacattactttcaattcatatggaaaaaagctaatcaaatcagctcaggaaatcaaacataagggTttgtctaggccgatatctgagtgaggactggggaataagataacatttcctatacctgcaccaatataaatggcaatgccactcctcctgaaggagcatttcctgaaccataaagctgctcgtttcgctgtgccaagttttgaagacctacaaacttaaatacaaaagAaaaaaaaaagcaacgtctgtaagatccatcatggtgaggcaacatgagagataaATaaaatcaaatGgctaagttggcaacaccatttgatcagagagttttaaaccatttattatcctagcttcgagtaaagttataggcttctaccattactcaaaattaaatcagccctttctgtttaaaacatactatatttgttcagtccatggttgggaaataaaattttaatacattatcatgaacacatttatgacaacaggcattaatgagttgttggagacaatgactttaatgtggtgtgctgttgttgcccatgaccaacactgacaagagttaaaacatactgaatttggttcatatgtaaagtggtcggtaaAcagcactctcaaacatagatactcaagcagcacacccgtacagcagtaatcgattaaacatgtgctgataggtgatcatcttttgcattcatttctgatatcagaaagaacaaaaagagaagatttggttatttccttaagttttcatgcaaactgtagagtatcaGGgggcacctttCcctacacattgtccattggcactgatgtcttaaccattcaaggcagagttaaaatgtttatattattagtagctttaagaatattcaactgcagctaggAaaaagattcagaactaagcacttttaagtagattcgtaacattagatagaagAaaatatccttacttgatcttctaactcctgcaaatatgcatttttcttgtcgatcctacctttcagtccgatgatctctgtctgtaaaatttgtataaatttatcaagggagcagccaggggAAaaaaaagaaatgtcagtaaacataaaggattagatgcaagaagacaaccttcaattcttcaacatcgctcatacttgtccgaggcaagcccttccactgaatttcctttttatccttagatataatatccatagccatcaggacattcaatgcatcataaacccttcgtcgtatatttttctcatcaaattgtggctgtgttgcattcacataatcagcattacagatAaaatatagcataaaagtgacaaaggagagtagtcatatttcttaactgtgttagggttgtcaggatcaggtgatgcaaaattattgttggggtctgcaaactcagctacaagctcatctgccacctgaaaaagacaatccatacatatAttattgtttaaacacaaataataataaaaagaaccaaacaagtgctgtcgttggaaccagccaatacattttatgaccgtataatcaccctatgtaacatgtagcaacacctAagataaactagataattggattcaatctcaccaaaacaagatgaatatcctttggcttggcttcatgctaagtttagaacagatgagacaaaacagcaaagctgatttttcagattttgggaaaagacagatgcatcagccaggataagtacccActtagcagctaacgccttttataacactacagttaaccatgttaaaaataagacaagtacagtttacaaagtaatatgaacacaatacctcgttgtaggttgttctccctttgctttcaactttctcacaaactggtaagaacaaatgaaacactccattacaactgttaatgctagcacatggtgaagtaaaactaactaaaatagtgctctcaaatagcaaaatgcatgtctgatttgaaaatAttcagcaaaagatgcttctgcaccagttgcaTttaaatgattatagtaatatctgtcaattgccttaaggttatgttccatgtaaatcaatatggagatgaacatcacaaatatattagtgagctagaaaactattcgtcacctttcatactaaattggcgcaatccacggccacccTtgtcagggcccgttgcacgtgttccaggccccctttttttcttcttgctgcatcacaaaaggagaggcatcttttcatcacaagtgtactatgaaatttattaacagtgatacacaaagaaacaaaaaataaaaatttcacgatgacggaaaacagaaccactttatgttctttaaatgttgctagatgtgaatcagcttaagctagcaagcaacaacagtacaacaaacaacatataaatatgtagttctaagtaaaccaacatggaagtggctttgatcaAAGataaacgagaaatagcaaatacttctgtggactatggaagtgctatgcacattgatgttaattatattggtcagcacattctgtagagaacacaactagcaaccaccatgtacgacagacagcggaaggcaccatagtcaaataactggtggaattcctgttatactagtttgatacctaaatccaaaagttaacttgagaatatgaaacaacaatttcccatggcttgtgtaaacatgctcaatacaaagcaatcataacactttgctcaagttcagcatcatatcttagcagcactctcattcattaccatcgcatcaattttcaacaacaaacaagctacagcattatactcagaaccgaatcttagttgccgagcaaatgcagctcggtacactgccgatcctcgcaaccataaaccccatcacagaccacggaggatcccaatccccacccccgccaggaaatcctgaccagaccagccccaaggggcgagtcAaccccgagcaactgagagcctgaaacgatgcatcggcagatttcttcacggacctcgtggcgggctgcgacgagggcgcgtcgtcgccctggatgtcgaggccgtcgaggcggcgggcgacggtggtctcgctggccggcgtggacgcggaggccgaggcggcgggcgtggcggcgctgccgccgccctgcatgcccggcgcGgcgcggccggtgggggagccctcgctcccccCGccgccgccactggtggaggccgaatgcgccgcgccggagaccat
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| CDS seq | atggtctccggcgcggcgcattcggcctccaccagtggcggcggCGgggggagcgagggctcccccaccggccgcgcCgcgccgggcatgcagggcggcggcagcgccgccacgcccgccgcctcggcctccgcgtccacgccggccagcgagaccaccgtcgcccgccgcctcgacggcctcgacatccagggcgacgacgcgccctcgtcgcagcccgccacgagcaagaagaaaaaaagggggcctggaacacgtgcaacgggccctgacaAgggtggccgtggattgcgccaatttagtatgaaagtttgtgagaaagttgaaagcaaagggagaacaacctacaacgaggtggcagatgagcttgtagctgagtttgcagaccccaacaataattttgcatcacctgatcctgacaaccctaacacaccacaatttgatgagaaaaatatacgacgaagggtttatgatgcattgaatgtcctgatggctatggatattatatctaaggataaaaaggaaattcagtggaagggcttgcctcggacaagtatgagcgatgttgaagaattgaagacagagatcatcggactgaaaggtaggatcgacaagaaaaatgcatatttgcaggagttagaagatcaatttgtaggtcttcaaaacttggcacagcgaaacgagcagctttatggttcaggaaatgctccttcaggaggagtggcattgccatttatattggtgcagacacgtcctcatgctacagtagaagtggagatatcagaagatatgcagctggtgcattttgatttcaatagcactccatttgaactgcatgacgattcctttgtactgaaagcattggggttctctggcaaagaaccagatgatacgcaagcccgggttggaaatggaggtgagtgctcaaCCACACCTATCTATCATCAATCACCCCAAGTTGCGAGGCCAAACGGAGTTAGACTACCAACATCGCCCCCTATTCCCGGTATACTTAAAGGGCGTGTCAAGCATGAACATTAG
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| Protein seq | MVSGAAHSASTSGGGGGSEGSPTGRAAPGMQGGGSAATPAASASASTPASETTVARRLDGLDIQGDDAPSSQPATSKKKKRGPGTRATGPDKGGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPNNNFASPDPDNPNTPQFDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSMSDVEELKTEIIGLKGRIDKKNAYLQELEDQFVGLQNLAQRNEQLYGSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDSFVLKALGFSGKEPDDTQARVGNGGECSTTPIYHQSPQVARPNGVRLPTSPPIPGILKGRVKHEH |
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| Function | Transcription factor-like protein DPB [UniProtKB/Swiss-Prot:Q9FNY2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_10g0012260 | OsNaBo_10g0012260.01 | Chr10 | 17448521 | 17453490 | - | NAM | ||
| CDS seq | atggtctccggcgcggcgcattcggcctccaccagtggcggcggCGgggggagcgagggctcccccaccggccgcgcCgcgccgggcatgcagggcggcggcagcgccgccacgcccgccgcctcggcctccgcgtccacgccggccagcgagaccaccgtcgcccgccgcctcgacggcctcgacatccagggcgacgacgcgccctcgtcgcagcccgccacgagcaagaagaaaaaaagggggcctggaacacgtgcaacgggccctgacaAgggtggccgtggattgcgccaatttagtatgaaagtttgtgagaaagttgaaagcaaagggagaacaacctacaacgaggtggcagatgagcttgtagctgagtttgcagaccccaacaataattttgcatcacctgatcctgacaaccctaacacaccacaatttgatgagaaaaatatacgacgaagggtttatgatgcattgaatgtcctgatggctatggatattatatctaaggataaaaaggaaattcagtggaagggcttgcctcggacaagtatgagcgatgttgaagaattgaagacagagatcatcggactgaaaggtaggatcgacaagaaaaatgcatatttgcaggagttagaagatcaatttgtaggtcttcaaaacttggcacagcgaaacgagcagctttatggttcaggaaatgctccttcaggaggagtggcattgccatttatattggtgcagacacgtcctcatgctacagtagaagtggagatatcagaagatatgcagctggtgcattttgatttcaatagcactccatttgaactgcatgacgattcctttgtactgaaagcattggggttctctggcaaagaaccagatgatacgcaagcccgggttggaaatggaggtgagtgctcaaCCACACCTATCTATCATCAATCACCCCAAGTTGCGAGGCCAAACGGAGTTAGACTACCAACATCGCCCCCTATTCCCGGTATACTTAAAGGGCGTGTCAAGCATGAACATTAG
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| Protein seq | MVSGAAHSASTSGGGGGSEGSPTGRAAPGMQGGGSAATPAASASASTPASETTVARRLDGLDIQGDDAPSSQPATSKKKKRGPGTRATGPDKGGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPNNNFASPDPDNPNTPQFDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSMSDVEELKTEIIGLKGRIDKKNAYLQELEDQFVGLQNLAQRNEQLYGSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDSFVLKALGFSGKEPDDTQARVGNGGECSTTPIYHQSPQVARPNGVRLPTSPPIPGILKGRVKHEH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 10.116040 | 4.249968 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0440100 | RBH | 0.000000 | 0.240515 | 1.444981 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g30420 | RBH | 0.253031 | 0.129041 | 0.474391 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0440100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0012270 | RBH | 0.437395 | 1.441545 | 4.050162 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0012480 | RBH | 0.098592 | 1.620601 | 1.580042 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0012180 | RBH | 0.644285 | 6.776545 | 3.651465 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0012450 | RBH | 0.050836 | 0.271319 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0012200 | RBH | 2.480682 | 8.406574 | 7.794624 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0263400 | SBH | 0.6215445 | 0.992475 | 1.5297265 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0012230 | RBH | 0.147529 | 0.824169 | 0.553106 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0283600 | SBH | 1.227944 | 0.8644665 | 4.178055 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0011980 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0011940 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0012360 | RBH | 1.807930 | 18.123289 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0011950 | RBH | 0.188473 | 0.0 | 0.317927 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0012450 | RBH | 0.090611 | 5.388014 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G012320 | RBH | 0.000000 | 0.680339 | 1.074883 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0003840 | RBH | 1.916035 | 10.203609 | 3.423839 |
