Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_10g0009110 | OGI:01011440 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr10:13967810-13970053 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcattccgcatcagattctaccatgtcgtcgttgctgtcctgttcagtaatgccctccctctccaattcatccataaggctcctacctacacaggccatgccgcgaccgccaccccttccacttccacgtggtctccctctcttccctctacccctgctcattgccttccttaccttttcgaagtttgcgggaTtttttgggcaggtagttgtgtaatggccatccctcagtccacaccagctgcacaccctagtacagagcttcttcccccttgcaccaagtgatacattctcttctggacctactgtccgctctttagtctttggtttgggtggtggttcttggcttatgacttcagttgatgtgcccgcaccattgttgcgtgcaacgagatcatccctacatgccacgctgtctggaagcatctcttttcctttcacagcactttaagggcggccatggctatttcaaatgcaacccttgacttactacctaaccgtacaatagccattgcctcagctagcagtgtcttttgtcggtaactttcttccacactgtcaagtccagctgtaacacggtcacgcctgtcaaatgacatgtcacttctggctttcatcgtgtagcgtcggagcacatactgaggtgatatcttctcgacctgagcatggatgaatgtccgaagaaggtgcgtgcataataaacctaacacaaataagcaatttaccagcagaaacaaacaattcagcaagctaaatttgttattatgtatctcggactggaatcagaagagttttgttcttaccagtatgttcccactgcttgcactcacattcataacgacctttctgaacgtccgctaacactttaaattgtagttggcaccaatcatgcttctcagaatgctccatgtccaacacaatccacctgtttgtgttgccaatgtccatgtcgatcctgaaagctgtgcaatcatccaatgcctcctcgaacaacttgaacacagctcttgtgtacacccttgacatctgcaccgcgaatgaccaccttgtctttgttatcggcatgccctgcatatgcgatggtattaaaaacaaagtggcccactagtcagcagggaatgcaaaaataggctacgatatacataccaaacaagccctggtctcagcagcctccttcgcttcccgtgaaattatgatatcaagcatcctacgcgcaaaactgtgcagattggtttggtgatcgacgaaatttctcttaactagtttgttcacactctcactctgctgagtagatgtcatcctgccacagtagtccttcttgaagagcgctgggatccatctgtgccttatttcgtacaagttttgcagggtcacactatcctgcaaatcaaactcatcaatgaaccacgaccacgcattttcaaactcctgtggggtgtatgtctggttcacgcacaacaacaattccgattcaatgcgatcgtcccttgcatacagaatgttgagtgcctcagagtgattcttcagtatgagccacctgcacagcctatgtattgtcttcggaaagacatttgttatggccaccgcgatcacattgtcctggtctgcagatacacaagattagtgaatacttatcttatcagttcacaatgtgtttactgctgaaccatgagctattgttgacataaacgttgaaggaattacttgcctgttagcacgcatctaggcgaggggcaatcctccatacagtttttgaacgttttgaatagccattcgaatgattctatcttcttgtctcgcagtagtgcacaaccaaacagagtgtcttgtatatggtggcttgctccaacgaacatcgccaaggacatcccatatatgttcgtcttgtatgtcgtgtccagagtgactgcatcaccaaagtccgcatactcggcctgactgctagcatggctccaaaaaatgttcttcaccacaccatcctcatcgagctgcatgtcccagtaaaatttagagttctgcatcttgcattcactgaagaaagcgaacagtttgttgatatcatccgccatctccgcgcatttgttagcagccctcctgtgtaaataaatatcacagattcaatatgaaactgtagggggttactaatgcaccaacacaacatgcgaagtgacaaaaaaaatattcagcacttcaacagcaccatataatacctgatttccacgtccggtgatgtgaatgggacat
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| CDS seq | atgtcccattcacatcaccggacgtggaaatcaggtttattatgcacgcaccttcttcggacattcatccatgctcaggtcgagaagatatcacctcagtatgtgctccgacgctacacgatgaaagccagaagtgacatgtcatttgacaggcgtgaccgtgttacagctggacttgacagtgtggaagaaagttaccgacaaaagacactgctagctgaggcaatggctattgtacggttaggtagtaagtcaagggttgcatttgaaatagccatggccgcccttaaagtgctccaagaaccaccacccaaaccaaagactaaagagcggacagtaggtccagaagagaatgtatcacttggtgcaagggggaagaagctctgtactagggtgtgcagctggtgtggactgagggatggccattacacaactacctgcccaaaaaAtcccgcaaacttcgaaaaggtaaggaaggcaatgagcaggggtagagggaagagagggagaccacgtggaagtggaaggggtggcggtcgcggcatggcctgtgtaggtaggagccttatggatgaattggagagggagggcattactgaacaggacagcaacgacgacatggtagaatctgatgcggaatga
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| Protein seq | MSHSHHRTWKSGLLCTHLLRTFIHAQVEKISPQYVLRRYTMKARSDMSFDRRDRVTAGLDSVEESYRQKTLLAEAMAIVRLGSKSRVAFEIAMAALKVLQEPPPKPKTKERTVGPEENVSLGARGKKLCTRVCSWCGLRDGHYTTTCPKNPANFEKVRKAMSRGRGKRGRPRGSGRGGGRGMACVGRSLMDELEREGITEQDSNDDMVESDAE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_10g0009110 | OsNaBo_10g0009110.01 | Chr10 | 13967810 | 13970053 | - | NAM | ||
| CDS seq | atgtcccattcacatcaccggacgtggaaatcaggtttattatgcacgcaccttcttcggacattcatccatgctcaggtcgagaagatatcacctcagtatgtgctccgacgctacacgatgaaagccagaagtgacatgtcatttgacaggcgtgaccgtgttacagctggacttgacagtgtggaagaaagttaccgacaaaagacactgctagctgaggcaatggctattgtacggttaggtagtaagtcaagggttgcatttgaaatagccatggccgcccttaaagtgctccaagaaccaccacccaaaccaaagactaaagagcggacagtaggtccagaagagaatgtatcacttggtgcaagggggaagaagctctgtactagggtgtgcagctggtgtggactgagggatggccattacacaactacctgcccaaaaaAtcccgcaaacttcgaaaaggtaaggaaggcaatgagcaggggtagagggaagagagggagaccacgtggaagtggaaggggtggcggtcgcggcatggcctgtgtaggtaggagccttatggatgaattggagagggagggcattactgaacaggacagcaacgacgacatggtagaatctgatgcggaatga
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| Protein seq | MSHSHHRTWKSGLLCTHLLRTFIHAQVEKISPQYVLRRYTMKARSDMSFDRRDRVTAGLDSVEESYRQKTLLAEAMAIVRLGSKSRVAFEIAMAALKVLQEPPPKPKTKERTVGPEENVSLGARGKKLCTRVCSWCGLRDGHYTTTCPKNPANFEKVRKAMSRGRGKRGRPRGSGRGGGRGMACVGRSLMDELEREGITEQDSNDDMVESDAE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.487445 | 4.089091 | 1.799952 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0381800 | RBH | 0.183438 | 0.000000 | 1.116402 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g24020 | RBH | 0.243236 | 0.094263 | 0.280218 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0381800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0002980 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0008910 | RBH | 0.000000 | 0.0 | 1.617439 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0009290 | RBH | 0.082986 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0014750 | SBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0213600 | RBH | 1.332221 | 3.4863935 | 7.5106945 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0009020 | RBH | 0.000000 | 0.165622 | 0.423135 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0228700 | RBH | 1.412985 | 3.692426 | 8.483591 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0003000 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0003060 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0008820 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G009120 | RBH | 0.192294 | 0.727251 | 0.381002 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
