Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_10g0008450 | OGI:10039200 | 3/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr10:13154575-13156598 | ||||||||
| Gene Symbol | CAMTA3, OsCAMTA3 | ||||||||||
| DNA seq | ttacaattccccctgcaaccggagtttcaagatgtcagtattataagttgatgcacaggtggcctcaatgtgttgttcaagggtcatAaaaaaggattgaattcaaggaagtacaatggaagctccgcaaaagactcatttagtcatgttgaatttgttgagtaccagagcacaatactggtgtgacttggaatttcagacagccagggttcaggactgtgtaattagcaaaggaagcatgcaaaattgactgttttatagaatctcatacactgctttctgattaattttattgcccagaaaaggaagaagtttttttatacttaaatagtttgtgtactatttaacccacactaaaaaagctaatacagtttgcaaaagatgggggaaaattgtcttctttgttttacgtacaggtgacaggagccataagcttgtagatatgttagaatggagccgtgaacagctatcaatagatagtagcataggtgaatcaaacctcaaggaaagaatataaatttgcacaagcatggggtaggttcaatgattcacaagaggaagcgaatatttagttttctcaataaggaaagaaaaacacatgaaatattctcatattagaacaaacaattcctagaaaatgagggatgaattgcataccaataattgcgccataatgcatattggcatagggttcttctccagtaagtatttcccacataacaatgccaaaggaaaatacatcaacctgtaccattgacaaatatatgactgagtaccctaaacataactctaaaaatattgctatagttgaattaattgcatataattctgcaacctggaattgttttaagagctagcacatattgatgatagaggattcattacccataaggagcattaagaacatggctagaaagaattgaagagaaccaagaaacatgtttttaccttttcagacaccttattgctgctaccattaagtaattcgggagccatccatgggagagtccccctcacaccacctgaaaccagggtgtttctttttattttggataggccaaaatcaccaacctgaacagtgaacaaaaatagagatggtaaatccacagagtgatcaaaaagctggtataaaacagtgatataacactagaaatggaagtgtgactcactttacatataggacgagattgatctttaagattcaccagcaagttatcacacttcagatcaaagtgcacgatatttttggagtgcaaatactccagcccaaatgctgcatccattgctatgataagccgcttacgacgatcaaggtacctgctcattaagaaaaaaagcacactgttactcacccaaaACGagcaaattaaattttAaaaaaaaatagcacaggaagcagttacttgtccttgcgctgcaagacatgccgaagagaaccattaaccatgaactcagttacggttgccaaggtaccaccagggccatctttcacaacaccataaaaggccacaacatttggatggtgaagcttagagagaatttcagcttcccgccagaattcatttgcctgaaaaaacaacAaaaacagacagtaaatagtgatactccagatatcttctaaagattattcaaacaatagtgggtgtggaccatcaacatccgagcatagcagtaccctgtttagtctattacatgtagcgattgtgtgtactcatggcatcactacacaacagtaaCccaaatccctagtaagatcaagtgtctgtatacaacaaaatttatacaacctctcatcctcatgccttactgccatattaatgcaaacctaaacaactgtaatttatgcacaacaaagccgtagaagagctcaccagtctttcaagctccgaagattgtcctgtaaagcagcttttctttattctcttaatagccacatcacttcccttccattttccatggtacacagtgccaaatgttccagaaccaagttccctaagttcttcaaggtcttcattcttgataat
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| CDS seq | atggttaatggttctcttcggcatgtcttgcagcgcaaggacaagtaccttgatcgtcgtaagcggcttatcatagcaatggatgcagcatttgggctggagtatttgcactccaaaaatatcgtgcactttgatctgaagtgtgataacttgctggtgaatcttaaagatcaatctcgtcctatatgtaaagttggtgattttggcctatccaaaataaaaagaaacaccctggtttcaggtggtgtgagggggactctcccatggatggctcccgaattacttaatggtagcagcaataaggtgtctgaaaaggttgatgtattttcctttggcattgttatgtgggaaatacttactggagaagaaccctatgccaatatgcattatggcgcaattattggtatgcaattcatccctcattttctaggaattggggaattgtaa
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| Protein seq | MVNGSLRHVLQRKDKYLDRRKRLIIAMDAAFGLEYLHSKNIVHFDLKCDNLLVNLKDQSRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVMWEILTGEEPYANMHYGAIIGMQFIPHFLGIGEL |
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| Function | Probable serine/threonine-protein kinase SIS8 [UniProtKB/Swiss-Prot:Q9C9U5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_10g0008450 | OsNaBo_10g0008450.01 | Chr10 | 13154575 | 13156598 | - | NAM | ||
| CDS seq | atggttaatggttctcttcggcatgtcttgcagcgcaaggacaagtaccttgatcgtcgtaagcggcttatcatagcaatggatgcagcatttgggctggagtatttgcactccaaaaatatcgtgcactttgatctgaagtgtgataacttgctggtgaatcttaaagatcaatctcgtcctatatgtaaagttggtgattttggcctatccaaaataaaaagaaacaccctggtttcaggtggtgtgagggggactctcccatggatggctcccgaattacttaatggtagcagcaataaggtgtctgaaaaggttgatgtattttcctttggcattgttatgtgggaaatacttactggagaagaaccctatgccaatatgcattatggcgcaattattggtatgcaattcatccctcattttctaggaattggggaattgtaa
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| Protein seq | MVNGSLRHVLQRKDKYLDRRKRLIIAMDAAFGLEYLHSKNIVHFDLKCDNLLVNLKDQSRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVMWEILTGEEPYANMHYGAIIGMQFIPHFLGIGEL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.451885 | 8.235527 | 6.725055 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0430900 | SBH | 1.927220 | 1.181120 | 7.186831 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g25680 | SBH | 5.720762 | 4.631463 | 3.001092 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0430900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0008380 | SBH | 0.714489 | 8.096322 | 9.936349 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0001470 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0008310 | SBH | 2.424987 | 5.421940 | 13.683103 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0008620 | RBH | 0.223194 | 0.162043 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0012410 | SBH | 19.873026 | 42.944656 | 58.487064 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0179300 | SBH | 0.171659 | 0.973075 | 0.272009 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0012900 | SBH | 1.092560 | 3.622994 | 3.959228 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0190100 | SBH | 0.223942 | 1.562616 | 1.6259275 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0012390 | SBH | 0.999108 | 0.753872 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0012420 | SBH | 2.439081 | 31.640514 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0017470 | SBH | 5.915154 | 22.570004 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0011360 | SBH | 0.590266 | 0.0 | 1.556023 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0008740 | SBH | 0.393108 | 8.390238 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G008460 | RBH | 0.383485 | 1.795451 | 3.621419 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0008740 | SBH | 0.290839 | 0.893232 | 2.794286 |
