Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_10g0001160 | OGI:10005900 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr10:2124597-2127758 | ||||||||
| Gene Symbol | OsFbox517, Os_F0054 | ||||||||||
| DNA seq | gaaccaagaagtgaaagcacgatatgggattttaatatcacgtctttgcaaaacatatataaaggcctaataaagtattcaaacatgtagcacatagtcttggttcttggaatatcacagaagcaagcaagcaaaagacgactgaacttatatgcaacgaaagacatgattcttcacgtcctagctccaaagaagatcagtaaacatgtctctgtgctttcgaagtcaactggaatcaaaggaggaagacggaagagagcgatcttttggacggaatgtgcccctttgacgtttcatacgtccttagattgaaaaagtgaacgttgctcatcctcatcccagtccccgtcctcgtcctcgtcctcgtcctcaagctcaaacccaaccatgttatcggattcaatatgaaattgatcctcatcattgtcttcgtattcgatatgaatctgagcagaagacattccactaccaacaaagaagtcaaccacgttgttcaccaggggatcatcctcccagcatttgacttcaacactcgtaagatgctcacatgtaaatgatctttcttcaagatcaccgatgaatacttctgttgttttccaattatcctacagaaaggaaaacaggtaagctatatcctctaatggcatgtgcactcgtgcaaaagctttcatatatgcatgatacatttcaaattgttttacctctgcgagtatcagggtcagtttctccaatcttggtgagttctgaaggaagacaattagtgcatagaagtttgcattcagacaccatttgcccagagtcaagccgacaagattgaagaactttggacaccattgcaaattgttttcaattgtcaactgcacaagactggagtgattatgtggctacataaatgcaatgacatattatagataaaatttcacaaaacttgccaaagaaaaacttgagagcatgaacattatgtgacaagtattctggtttcactacaggtacaatatagcttcaacataatggatagtaaaagaccacaaggaaagaagaaagatattatgactgccaaaaaccaaattaaacattgccatacttgtttggtcccaagtaaagtctatagagcatgtgtgaattatttatcaggcttttttccatgcaagttgggtactccttctgtcccattataagtgcagccataagtttccgtacccaaatttgaccattcgtcttatttgataaaattatgaaaaTtttttaaaaattaagtcatgcataaagtactattcatattttatcatctaataacaataaaaatactaatcataaaaatatttcaaataagacaaatggtcaaaattgggcactgaaacccacaactgcgcttataatgggacggagggagtagctaactagctaagccagtcgacacacaataggcaaatgtatcaggaggtagcagcaggagtaagacactgaaaaattgctgaagcattttttccattcatttgttgactttgaatgtctcataattttgaaatatatgtgtagtattcctctcaggaaagaaatatatatgcagtaatgtcaattgaagttaaaccattactcagattttggacatgatgcattttcagtttccaacccaaatattgcagccacacaaaacacatgtcaatcatcaaacagcaaatactccagttccattctgaaatcgaactgccaactaagatgctttaggtcaagtgatcaacatgttgttttatatagaaacgaaacagagtacatgaactatattagatgagtggttgatataacatcagttatcctattgatatgtcatgatttcacgacataagatttagttagcaacagttagttttgcaggggacaggtaaacaatgtcatgtaattgtgaagtatcaagaagagacacttcaccttttcgcattgacacctaagtcaagatgcataagacaaggtggaatatgtaagatcagtaagcatacctttttcccctgataactgaaaatcaaatctttaacgtgagaaaagctccagagatagtggcggagatcattagcatcgaaatcgctggtttccacacaataaagtaccactgatgcgctcactagtgatgccacgtccttcagtacaggcttgccgccaatagtattgcgcaggcccaaagtagtaactgtcggagtagaaatagatatcctgtactcatagcagaatttagtagtatcgaaggtcaaaaccttcagtgtgttggaggagatctcgtcatccgcaacgatgcaaccatctaagtcgaaacgttccaatgctggacagcccatctggagttgcttgaagaaatcttggtccatgaaaacattgtcgaaggcaattcttctcaggtagattgaactgaacaccgagggatcgagctccaatggtttgagcagcatgacaacctccagaaaccaggcgttcttctgcaaaccgtaggaaatccacctgttcgcgtctgccgatccattgccgtcttcgtctggtatgcagcatctgcagaagaacgtctctattgaggcggtgggatcgcgtcgctccagcagccggttgacgaagctgttgaacaccaccatcttggccttctctccctcgacgtcgatgatcctgtccgggatgagatcgcagatgtcggcgtggacgcggggcacggagcgccagaggtcgcgccagcgccgcgagagcacgcaagtccgcacggcctggcgagagtccaggaacgacatgatgcggtggaggacccctcggggaggccgctgagccagtccctgcccgagtcttgcgcggggtccatggccggacctttcttgccaggcggctcttccatggccaccgacgcgctgagcacccgctcagacgcctttcgtcgaacaggtggcgcgcgtggaagctgcaaagaggggaaaaccaagaaaccaagcaagcagcagatcaaccgtcagcaagattcgacaacgccgcagctctggcgatcgaggagagaatagagatcagacgcaagaaacgatgattggaagaaaggaagaagcaaacctcgattggtttgggctgtgaagaggaagaagacgaacaatctctgtgtatttgcggcgctgaaataaaaagcggggatgcctcctc
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| CDS seq | atgtcgttcctggactctcgccaggccgtgcggacttgcgtgctctcgcggcgctggcgcgacctctggcgctccgtgccccgcgtccacgccgacatctgcgatctcatcccggacaggatcatcgacgtcgagggagagaaggccaagatggtggtgttcaacagcttcgtcaaccggctgctggagcgacgcgatcccaccgcctcaatagagacgttcttctgcagatgctgcataccagacgaagacggcaatggatcggcagacgcgaacaggtggatttcctacggtttgcagaagaacgcctggtttctggaggttgtcatgctgctcaaaccattggagctcgatccctcggtgttcagttcaatctacctgagaagaattgccttcgacaatgttttcatggaccaagatttcttcaagcaactccagatgggctgtccagcattggaacgtttcgacttagatggttgcatcgttgcggatgacgagatctcctccaacacactgaaggttttgaccttcgatactactaaattctgctatgagtacaggatatctatttctactccgacagttactactttgggcctgcgcaatactattggcggcaagcctgtactgaaggacgtggcatcactagtgagcgcatcagtgccacataatcactccagtcttgtgcagttgacaattgaaaacaatttgcaatggtgtccaaagttcttcaatcttgtcggcttgactctgggcaaatggtgtctgaatgcaaacttctatgcactaattgtcttccttcagaactcaccaagattggagaaactgaccctgatactcgcagaggtaaaacaatttgaaatgtatcatgcatatatgaaagcttttgcacgagtgcacatgccattagaggatatagcttacctgttttcctttctg
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| Protein seq | MSFLDSRQAVRTCVLSRRWRDLWRSVPRVHADICDLIPDRIIDVEGEKAKMVVFNSFVNRLLERRDPTASIETFFCRCCIPDEDGNGSADANRWISYGLQKNAWFLEVVMLLKPLELDPSVFSSIYLRRIAFDNVFMDQDFFKQLQMGCPALERFDLDGCIVADDEISSNTLKVLTFDTTKFCYEYRISISTPTVTTLGLRNTIGGKPVLKDVASLVSASVPHNHSSLVQLTIENNLQWCPKFFNLVGLTLGKWCLNANFYALIVFLQNSPRLEKLTLILAEVKQFEMYHAYMKAFARVHMPLEDIAYLFSFL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_10g0001160 | OsNaBo_10g0001160.01 | Chr10 | 2124597 | 2127758 | - | NAM | ||
| CDS seq | atgtcgttcctggactctcgccaggccgtgcggacttgcgtgctctcgcggcgctggcgcgacctctggcgctccgtgccccgcgtccacgccgacatctgcgatctcatcccggacaggatcatcgacgtcgagggagagaaggccaagatggtggtgttcaacagcttcgtcaaccggctgctggagcgacgcgatcccaccgcctcaatagagacgttcttctgcagatgctgcataccagacgaagacggcaatggatcggcagacgcgaacaggtggatttcctacggtttgcagaagaacgcctggtttctggaggttgtcatgctgctcaaaccattggagctcgatccctcggtgttcagttcaatctacctgagaagaattgccttcgacaatgttttcatggaccaagatttcttcaagcaactccagatgggctgtccagcattggaacgtttcgacttagatggttgcatcgttgcggatgacgagatctcctccaacacactgaaggttttgaccttcgatactactaaattctgctatgagtacaggatatctatttctactccgacagttactactttgggcctgcgcaatactattggcggcaagcctgtactgaaggacgtggcatcactagtgagcgcatcagtgccacataatcactccagtcttgtgcagttgacaattgaaaacaatttgcaatggtgtccaaagttcttcaatcttgtcggcttgactctgggcaaatggtgtctgaatgcaaacttctatgcactaattgtcttccttcagaactcaccaagattggagaaactgaccctgatactcgcagaggtaaaacaatttgaaatgtatcatgcatatatgaaagcttttgcacgagtgcacatgccattagaggatatagcttacctgttttcctttctg
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| Protein seq | MSFLDSRQAVRTCVLSRRWRDLWRSVPRVHADICDLIPDRIIDVEGEKAKMVVFNSFVNRLLERRDPTASIETFFCRCCIPDEDGNGSADANRWISYGLQKNAWFLEVVMLLKPLELDPSVFSSIYLRRIAFDNVFMDQDFFKQLQMGCPALERFDLDGCIVADDEISSNTLKVLTFDTTKFCYEYRISISTPTVTTLGLRNTIGGKPVLKDVASLVSASVPHNHSSLVQLTIENNLQWCPKFFNLVGLTLGKWCLNANFYALIVFLQNSPRLEKLTLILAEVKQFEMYHAYMKAFARVHMPLEDIAYLFSFL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0126500 | SBH | 0.000000 | 0.570656 | 0.902939 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g03730 | SBH | 0.000000 | 0.370106 | 0.238106 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0126500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0001320 | RBH | 0.033080 | 2.588777 | 0.220496 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0001320 | SBH | 0.0 | 0.000000 | 0.258965 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0001290 | SBH | 0.346493 | 0.000000 | 0.536902 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0001220 | SBH | 0.017392 | 0.009777 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0001250 | SBH | 0.182822 | 1.198121 | 1.104233 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0031800 | SBH | 0.394214 | 1.1757945 | 0.7663015 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0001370 | SBH | 0.0 | 0.044737 | 0.383252 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0034200 | SBH | 2.079148 | 2.0945665 | 7.0703795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0001270 | SBH | 0.012983 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0001350 | SBH | 0.214049 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0001340 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0001220 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0001290 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G001280 | RBH | 0.000000 | 0.989353 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0001180 | SBH | 0.0 | 1.246232 | 0.0 |
