Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_10g0000250 | OGI:10002030 | 8/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr10:531508-537675 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gaaccacaacatgagaaggtaactagttgatagccatccttaacactgaatagaagactagaaagacaatgtttaaaatcatggactggtacacttgaatcatcatcattttcaacagccatgctacctattatgacttctaaaccgctaaccataatctatctactaacaaagctcatccttcattcctcttcttcttaagatttgacatttaaattactacatctttccacccccatttataatataatattaagttacaaaacggtggtatcattcatcatatctcatcgttcttccatccatccaacaaaatctacggcttctcaccagcgctactccacttaaagcttcagacctttcaccctgtaatcgtcaaacagagataaaatgttcagaatatgtgattagtcaaacatttcagacaaagatcaacagatactacaccaactacttttcagtacgcccaaattactatttcaccagtacagcacagctcctccaatatgtatatggttccatgctaccagtggaaagtagtaaattcaacagaggaaaacatattcagaggggaacaatagcttgtgagcaaattgatatctactgttacattccataaatatcggtattttctactggcgaaaacatgggaatgcacatctagtcctccccataccattacaaattaggaaattgatacccaggatcacaatctagaatgtaaaatcaaaatcagcggaagaataggcaataccataggaaagccatttgcattttctttttctcgaatacaagccatttgcattttcattgcccctgaattggagggttggcatatatgaattttacataaaggatatccttttttggcatatgaaagaccatgatattgacatttagatgttttcagtcaacaagcgctctttctgtacagttatacttatagatacaactggcatatcgattttaactgtttaagatgtcggatttctacagactatcgaatttcagtctcacacatttcaaacttcataatgaaggaaagaggttatcttaggagacgaaaaggttggagtacggactgaaggcataccttctacgcatactggataatccagaacttccattgtctacaaaatcgcttcacaggttgccttattgtgtcctgcttgcttgcacctgctacagagccgtacaacagtaggtatcttgttggggttaaaacgcttccttctgggtttatctgatgtccgtggcttaggaggtggaatcaaatttgccccagcactaaaatcaacggtatccatgtcaggaattgggaatattgctcctgagtaagccaaatggtagctctctattctgaaaaattttgaacagtagtcatagaaagatcgcccaaccctgttgaacacagcaacagcatgcatacaaggaaggccagaaagttgccaccttcgacaggtgcattcccaatttgcaaggttgacaacataaattgcactgccccggacttcaaacacggtttcagaagagcacagcacagtcagcttcccagctttggacatctcatcctgcgctttgaattccatggaaggagttaaaggccctgaccaggacttgcaagactcgcgccttgcttctatcacctccattattttcattctcagagagtctatcatcagcactattgatccttccttcttggtaggtatccagttattaaaagcatcaacaatgttcgaggagaaatgatcataacgacagcctctgaagatggcatctgaccaatgctccggcttacttgcaataatccaatcagcagcttcagtggatatattccttatgctctcaattgatgcgttaaaatcctcgatgctgcaggcttgggctgctcgagtgaaatcctcaaccatcccatctcttatctgttgtgaccacggtcccttcctcagctctcctttgaattcttccatgatatgatgcaaacagaaggcgtggtgactttcttcgaacacttgtggaacagcagcatccaatcccttttgtccactggacaaaaatgtcatagcattgtaaggatagttgtgattctggagagcatacctcagctgcatcaagaaccaaacccaactctcataattttcatcttcaaccacattaaatgccactggaaagacaccatcatctgcatcaactccagcagcaaccagcaacttgtactcattagtcgctttaagcggaaccttgtcaagaaatatgagaggcctacacccatttgtgaagccatgcaaagaagcgtggaatgcaacaaagaagcggcggaattttgtatccaccatcggagacaacaaagctatgctacctggattggtctccaaaagcctttcacaataccagggcaaatggctatatgtctcccggatagcatgataaagctccttctgtgccacttctctacctcgccaaacctgtgaataggtcagcataactccgtattcttcataaatttccttgacaaggtcctttggcttgaacaatggattctcatgcagcttctccttaatgacagtagtcagccactgtcttgttgctcgccgctgaccctctccacttcctccaccacatgtatgctcgtctgtcattttcttgataacaaatttcttgttccgagatgattcagatgcatgcaaccgccatgtgcaaccctcaccaacacattttacagtgacacgtgtggtttcatttttaatgaatcgataaacaaatcctttcccaatagcatacttgcataactgagcacgaaaatccttcacattatcaaattcttgaccgacacctttgataatatcatcccaaaacacaataggattgttaagaccctgtgtaggttctgttgtgatctcagagccaacatatggattgactgaatcatcaaaaagcccaactgattccctgcaaaagccatgccaacatccgttgaactcatacttcacaaacttgcaggaatgatgaagaacataaaattagtcaaacaattacctcgctgtgttatcaacgagagcaagcttttgctgattcaagatgtctggagctgtggaaccagctccagctgtattggcaaaggcaatatcactcccaaattccagtggaaaaaccctagtttattttaacaaaagtagcaaccgtataaatttgggcatgatacggtcattaaaataaaatgatgtaacatctaaaattagagaagacatgcaaaaatgtggcaattctatgaaacccaattatgtacctgttgtcatcattttcggtaacaacttgtcttggctgtttcacattattggcattagcttgaactgcagtgccagtagcactgggagtcttcttcttgttttttgatgccctggagaaagatggtattcaatataacatggaaaagcacggggctataaataacatcagatagagaaaactggaacagtggcacctacttatttttggaagttggcgttttccttttatcacctcgtgcattagacccaggtttagcagtggaggctccagtctgagttatactcctagcaagagaaacatactaatcaaaacagaacatgaatgatttactcaaaaaatagtaaattttgcaaaactagaaatttaagatatagtataaaaaaagtatagatttaacactcaatttataagaaaactataggtttaagccatggtatcgcaaaattacggcttgaatctgtacttctaagataactttgtcgaaggttctgtaggcttgcaaaagttactccaaaaggctgcacaaaaaggtaaaaaaggaaatacctgttctccactctacttatcaaaaaaacatccacttgtgcagaactagcagtaaaatcgaccatccgttgcaaatctcgatcacatgatattgtgataagagttctgttattgttcgggagaaagtatttcagtgacacatctgcaacctcaacatgaaacaccttggacacctcatccttgaagttatctagtgacatctctcgtgtgacgtcaacagcgtgtgcttctcctcctttgtagatcaaattgccattggggccagaagtgaactctccaccatactggcaaatggcaacaactagggacccctctgccatgcctccagagttgttccgtaatctacatgttaggaaataaatcaatgtgcatgcgtaatccaggacagtacaataagaaattaagtagtacataaagaatccacgtcactatgaaataaatattattatccaaaattaaatgaaacccaataatatcgatatccctgatacatgaactctacagaagcgtgaattatggccctgctaaaatatttatttatttattttaaaaaaaagaatgattcagcgagcaagtttcccaagcagaacaaaatagcagtatatgttaactacgttcatgggcattatttagggtgaggatttagcaggttttatgatctaccttagatatttatgtgtaattaatgcattaattgcatagtttgtccatattgcaatggcgaatgttggaacgttggatttgattgaaggcaggtgactgtagtagttcagtgtacacctcttttgggtggaggtagggaagaacgcaagtgatactttttttatattagtggtttagaatagataagtgttctgttcaatccccaacttgtgatatctgtggactcgacgatgaaacagccagccacttatgcctgctgtgccctttcacctgcgacttctgggtggccctctctgttcatcctggaatctctgatgtacgagatgtcggctgcatttacccccctgaaacaataccggtggcgcaccatcggaccatcttcttgctctgctgatggtgtctgtggaaccaccaacacgatgtcgtcttcagaaatgagcaaccttccctccgacgacttcttcgacgctgtcttgatgaagctaacttgtgggctgagcgtatccagcgccctgatcagattgtggtttcagcctggaaagaaattttctcctgtcctatgcaactccaacatatgtaatggcaacggcactgtcgttctgcccgccctatgtaacctcctttgtaatgaaatctcttatcaatggaaaattcaggtggggaatctctcccctccagtgattatccaaaaaaaaaaaagaaccaagactgaagatgtaatctgttccactgtatcaaaacatatatgcaacagttcaaaatggaagcaaatgaactgtaagcaaacaaattaacagttcaacattgtaattttgcgtgaccccaaacctaaggtagattttgaatcaggatgcccctgctacatatcttccttttcctttttacacttggaaacagaatactttaagaaacagtcgtgttttcatgggtgctaagaggattgaaacacaccccaaatatatataatggaaagccccctaattacatacgaatcacacatttggtcccccaattctactttttttgaccattcggtgaaccaaagaaactatttttatggaccgacaggcaccaaaaggaaccccagcttatctgtaatgaaaaaaaaatatggccttgagatgtattgcaaagaagaaacaacagatccaaaataacaagaagcccaaggggctgacctaacatggagcatgggttggttctattttctttttttttcttaggaggaggaggatgaaacacaagctgctgctggtgcctggtagtactacaccagccaccccaccccacaccgcatcaaagaaatccagaagcagagtcatgagattgaaggggaagaaagaaagaaatcgatccagaagagaaaaaagaagtggacggattcccaatctacaacacgcaggtggccggcccttcaatccaccaagtcacgacgcagaggaggaagaggacgtataccttcaattcgattcctctagccgcccgcgcccacaccaacaggggaggaagcggcggtcgggaagtagaggaaggagcggtgcgcgcacagggaaggactcgggtgggatcgggtcggctccggcggtcgccgtcgccgccgccgccgtagcgaggaggaaggggaagaggggattagggctcgggggtattttggaaattatgcggggt
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| CDS seq | atggcagaggggtccctagttgttgccatttgccagtatggtggagagttcacttctggccccaatggcaatttgatctacaaaggaggagaagcacacgctgttgacgtcacacgagagatgtcactagataacttcaaggatgaggtgtccaaggtgtttcatgttgaggttgcagatgtggcatcaaaaaacaagaagaagactcccagtgctactggcactgcagttcaagctaatgccaataatgtgaaacagccaagacaagttgttaccgaaaatgatgacaacagggtttttccactggaatttgggagtgatattgcctttgccaatacagctggagctggttccacagctccagacatcttgaatcagcaaaagcttgctctcgttgataacacagcgagggaatcagttgggctttttgatgattcaggattggatgctgctgttccacaagtgttcgaagaaagtcaccacgccttctgtttgcatcatatcatggaagaattcaaaggagagctgaggaagggaccgtggtcacaacagataagagatgggatggttgaggatttcactcgagcagcccaagcctgcagcatcgaggattttaacgcatcaattgagagcataaggaatatatccactgaagctgctgattggattattgcaagtaagccggagcattggtcagatgccatcttcagaggctgtcgttatgatcatttctcctcgaacattgttgatgcttttaataactggatacctaccaagaaggaaggatcaatagtgctgatgatagactctctgagaatgaaaataatggaggtgatagaagcaaggcgcgagtcttgcaagtcctggtcagggcctttaactccttccatggaattcaaagcgcaggatgagatgtccaaagctgggaagctgactgtgctgtgctcttctgaaaccgtgtttgaagtccggggcagtgcaatttatgttgtcaaccttgcaaattgggaatgcacctgtcgaaggtggcaactttctggccttccttgtatgcatgctgttgctgtgttcaacagggttgggcgatctttctatgactactgttcaaaatttttcagaatagagagctaccatttggcttactcaggagcaatattcccaattcctgacatggataccgttgattttagtgctggggcaaatttgattccacctcctaagccacggacatcagataaacccagaaggaagcgttttaaccccaacaagatacctactgttgtacggctctgtagcaggtgcaagcaagcaggacacaataaggcaacctgtgaagcgattttgtag
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| Protein seq | MAEGSLVVAICQYGGEFTSGPNGNLIYKGGEAHAVDVTREMSLDNFKDEVSKVFHVEVADVASKNKKKTPSATGTAVQANANNVKQPRQVVTENDDNRVFPLEFGSDIAFANTAGAGSTAPDILNQQKLALVDNTARESVGLFDDSGLDAAVPQVFEESHHAFCLHHIMEEFKGELRKGPWSQQIRDGMVEDFTRAAQACSIEDFNASIESIRNISTEAADWIIASKPEHWSDAIFRGCRYDHFSSNIVDAFNNWIPTKKEGSIVLMIDSLRMKIMEVIEARRESCKSWSGPLTPSMEFKAQDEMSKAGKLTVLCSSETVFEVRGSAIYVVNLANWECTCRRWQLSGLPCMHAVAVFNRVGRSFYDYCSKFFRIESYHLAYSGAIFPIPDMDTVDFSAGANLIPPPKPRTSDKPRRKRFNPNKIPTVVRLCSRCKQAGHNKATCEAIL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_10g0000250 | OsNaBo_10g0000250.01 | Chr10 | 531508 | 535664 | - | NAM | ||
| CDS seq | atggcagaggggtccctagttgttgccatttgccagtatggtggagagttcacttctggccccaatggcaatttgatctacaaaggaggagaagcacacgctgttgacgtcacacgagagatgtcactagataacttcaaggatgaggtgtccaaggtgtttcatgttgaggttgcagatgtggcatcaaaaaacaagaagaagactcccagtgctactggcactgcagttcaagctaatgccaataatgtgaaacagccaagacaagttgttaccgaaaatgatgacaacagggtttttccactggaatttgggagtgatattgcctttgccaatacagctggagctggttccacagctccagacatcttgaatcagcaaaagcttgctctcgttgataacacagcgagggaatcagttgggctttttgatgattcaggattggatgctgctgttccacaagtgttcgaagaaagtcaccacgccttctgtttgcatcatatcatggaagaattcaaaggagagctgaggaagggaccgtggtcacaacagataagagatgggatggttgaggatttcactcgagcagcccaagcctgcagcatcgaggattttaacgcatcaattgagagcataaggaatatatccactgaagctgctgattggattattgcaagtaagccggagcattggtcagatgccatcttcagaggctgtcgttatgatcatttctcctcgaacattgttgatgcttttaataactggatacctaccaagaaggaaggatcaatagtgctgatgatagactctctgagaatgaaaataatggaggtgatagaagcaaggcgcgagtcttgcaagtcctggtcagggcctttaactccttccatggaattcaaagcgcaggatgagatgtccaaagctgggaagctgactgtgctgtgctcttctgaaaccgtgtttgaagtccggggcagtgcaatttatgttgtcaaccttgcaaattgggaatgcacctgtcgaaggtggcaactttctggccttccttgtatgcatgctgttgctgtgttcaacagggttgggcgatctttctatgactactgttcaaaatttttcagaatagagagctaccatttggcttactcaggagcaatattcccaattcctgacatggataccgttgattttagtgctggggcaaatttgattccacctcctaagccacggacatcagataaacccagaaggaagcgttttaaccccaacaagatacctactgttgtacggctctgtagcaggtgcaagcaagcaggacacaataaggcaacctgtgaagcgattttgtag
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| Protein seq | MAEGSLVVAICQYGGEFTSGPNGNLIYKGGEAHAVDVTREMSLDNFKDEVSKVFHVEVADVASKNKKKTPSATGTAVQANANNVKQPRQVVTENDDNRVFPLEFGSDIAFANTAGAGSTAPDILNQQKLALVDNTARESVGLFDDSGLDAAVPQVFEESHHAFCLHHIMEEFKGELRKGPWSQQIRDGMVEDFTRAAQACSIEDFNASIESIRNISTEAADWIIASKPEHWSDAIFRGCRYDHFSSNIVDAFNNWIPTKKEGSIVLMIDSLRMKIMEVIEARRESCKSWSGPLTPSMEFKAQDEMSKAGKLTVLCSSETVFEVRGSAIYVVNLANWECTCRRWQLSGLPCMHAVAVFNRVGRSFYDYCSKFFRIESYHLAYSGAIFPIPDMDTVDFSAGANLIPPPKPRTSDKPRRKRFNPNKIPTVVRLCSRCKQAGHNKATCEAIL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_10g0000250 | OsNaBo_10g0000250.02 | Chr10 | 531536 | 537675 | - | IsoSeq | ||
| CDS seq | atggcttcacaaatgggtgtaggcctctcatatttcttgacaaggttccgcttaaagcgactaatgagtacaagttgctggttgctgctggagttgatgcagatgatggtgtctttccagtggcatttaatgtggttgaagatgaaaattatgagagttgggtttggt |
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| Protein seq | MASQMGVGLSYFLTRFRLKRLMSTSCWLLLELMQMMVSFQWHLMWLKMKIMRVGFG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr10 | 532601 | 534459 | - | OsNaBo_10g0000250.02 | OsNaBo_10g0000250.01,OsNaBo_10g0000250.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.521585 | 7.698370 | 4.832340 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0104700 | RBH | 2.556341 | 2.243641 | 4.254749 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g01550 | RBH | 1.747250 | 1.542225 | 1.087594 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0104700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0000210 | RBH | 6.101510 | 8.964569 | 11.398093 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0008200 | RBH | 6.526749 | 11.209282 | 6.5346255 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0007200 | RBH | 5.112559 | 10.511707 | 11.4868655 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0000250 | RBH | 0.281757 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0000210 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G000260 | RBH | 0.718116 | 1.053839 | 2.019547 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
