Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_10g0000230 | OGI:10001970 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr10:519962-528786 | ||||||||
| Gene Symbol | OsWD40-175 | ||||||||||
| DNA seq | ctagttcatccatagcttgaggaccctgtccttgcctccagatgcaaccttctcgccgtcagggctccaatccacagcgtacaccttacatttatatatatatacataatctttgttactacactataataatttcaattcagatttttattgttccaaaatatgcatgcatgtacctcatctgcgtgccctggcaaatcctgtttcaacttgcgtgttcgaatatcccagacctgaatcgtaccaacaaatagagaccgagcataacgtatcagttccatggtccatgctatgcaagtaatggactttacaagccaagttaatagaaacataattaaaagggcatgcctaaaaacaattgtatgataccagtcacacttggcagttccaaccaatatttatgtcagattcaccagttttcggatgactactcaagcaaacagaattaactcctcaaagacaagtattctgatataatgaattccagtgccagattgacaacatacagattgaatggcatgtcggtgaccagttaggtaaaagacagagaactaagcggagacagagatagatacctttagggtggaatccttgcttccactcaatagaagcctactgtcagcagaccagctatggacagaaatgatgatattaggcattgcggcatgtacatacaatggaaacagcaagatagaaaaaccgacctgatctggtagacatctgcaacatgccctctgaaagctgcaacaaatttgcctgtaatgccattccataacttgacagatttgtcaaaggaggcacttgccagccactgcccgtcaggagagaagtagacatggtttacgagctgcacaaagaaaagcaaatgacaaaatcatttctaagcacacttaaataaaaaaatttaccctgcattggtaaaaaaagcaataatattttttttttcgaggaaccgacgacaggagtttctcccgccggaatttatagaagagaattggcccatttaataagggaaaccgggcccaaaaaccgaacaagcacggttaattaaacgggaaaccggcgaaaacctatacagaaaaggaaaagaaagcaactattgagacctcacaaaactcatcgttgctgagcttgccaaaggcaagcagcttcgacaacataatgcacgaggtctccagaaccaccaaacatcctctagtggagcagaaaccttctgagcgaagccttcaacaagggaacaacatcaagaatgttgtcaacgcccgttccaaaaggaacccaattttcacctaaagggagagagagccatcatgacgatacctccaaggaggaaacggcacccacaggcgtcgatatcatcaacctagaaaaacactagacaaggttttcacccgagactctctcaaaatgctccacctccaaaccctcatcgcgttgcctggacgtctattgagggtcatcgttgccgagcttgcaagacaagcggctccgactctgcctcaacagtcaatcacattgcagctcgaccagagaccacctcacacacaggaacccaactgcagcaaacctacggcgcggccgactccagcgagacaggacgccggaaaccaactccgcacgccacccctaccgcaccaaggagctccccggcaacaactggaagtagcctagcctaagaagggaggagcccctaagaagaggggagcgggcgccgcaccgccggtgagcactggaagaagaagaactaaagaagaggggaaccggatctagagaaaaaggaaggagggagatggaggcgccgtccccgtcgccggcaaaatcgcagcagattggcagcccccggccaggtcaacagcagccggcgccggagcgcgctccaccgagagccgccgccgacgaatgcgagccgccgctgacccgatgccatcgtcgccgacgtgcccacgccggagaagcccgtcaccggccatccgcctacgcccgagcggcgtcggcgtcgaccgagcccgtcgccggtcaccccggccagaggggcaaccggatctggcgactccgtcgcccgtcgccggagccagagccgaccgccgcggagagccccgccgccgcgccgtggagagccccaccgccgcgccgtccccatcgccgcgacctcgccgtcccgccgccatcgttgccacgcccgcgccggggcgagatggagccgaggaggatggccccgccgccgccatcccagcgcgtcgcccggctttgccggcgacaagctccggcggtggcgaagcacagaggagggaggaggaggggcggcggcggctagggtttcgcccccgagccgccgcgcgagggcgactcgcaataatatcgaatggtttttatctagcgctcccaacttgttcatgccatttgacaacttacacaagtcctaatgatttcaacaataatctgttctatagatgggtttggagtttggaaacactcataccattaattttaaatgacaccgattcattattattttcaagtttcagggaggaaactcatagaattttcaatcttttctcagtattcagtgagacaaaactgaatgcataaacaagtcaaaatgtacatacaatgatacaaatgcaagaacatttcatggagctgtcaggacaatataccttttgatgaccagtcatgcgggctttgggctgtttactaattgttggttcccagagaaacatcgtaaaatcatcagaaccagaaactagtctctcaggagcattgcccctcatcttcttgtatctcgcaagagctgcctggatatccaaagttctcaggtgaaaaaattcatttcagcaagcaacaaatgaaaatattaagagtcagttctaacactaatttatgatcacatcatacctccttcatttcctctgctgttgaatatgtcttgccagtatggtcatatgcccccgtgcgcaaaacatactcggtgctcaaagcaagtgaattgacccagtgaccatgaccctgaatatgcagtgtaagtgtgtaactactttaacaagatgacagtgacaactagcatagaatagctgacttgaaagcaaggtaatagttcacagctaccaaaataataggtccagcacatgcaaaaaacaggcaaaatcagatcaaagatattccacaaaattgtttcctgggtatagctgacagttcacaattgaaagaatgtataatttatttggtacgattcatgaattaagcacacaaaattactccctcagttcatggctatagcatgcacacgtcttccaaagtaaattttgtttttttccttcctctaacaccccctggtcagagtaaaccatcaactacatggcaatgaattctctaattcacaaagcaattggtatcggggtttggccttagaatgctgtagatgggcatccttgtaaatttgatttgctattttgttttttgagcccaaaccaagtttgtatggcctttcataggctacttgcatcttaaaagattaaactaggggtggaaaaaaagctcgggtttgtgagctcagctcgggcttggctcgagcttggttggcttggctcggctcgtaagccaaacgagccaagcttgcctcctttttagctcgttgctgaaatgagccgagccgagctagctcgtgagccacttgttttggctcgcgagcctaggtcatcgtgtgtttatatcgattattttactttatatggcattataatttgtcaacttaaaatttatcattaagattttgaagaattgaatatataaacttatttaaagtttacatgttgatgatttggttttacTttttttaataattataaaatatatatgaagagatatttcaacaggaaggcttgcaagccagctcgagctggctcgagccaggaaacgagccgagccgagctcaagttttagtttgtttccctaaccaagccgaaccaagccaagcctacttttttgcgagccactgcaagccgagccgagccaggcttggctcgtttccacccctagattaaactatcattgccatcaacattagaaggaaataaacatgtttgcctcagatatgtcgttcataaagaatatgcattcacatgtgcttattctgtaggtaaggatgatgcatgactagaacgtgtgtagtatcagtcccctacaatagttacactacaaacccacgcaaagttgaaagttcagcgggacctaactagtgtttgagcatctccagacccatttatgtccatatgtagaacatgcaggccaggaattcctcagaagctgcagaatctgccatttcccaatacaacttcccgtaaaatctgtatctctctggaattgatcataaaacctgtagttctctggtactttattcataaagcatgtggttgtgtgatatttgctattttgctcataattcaatactagcaaagccaacttgggagcataaaagtttgcataaatctttgaatgtccactgaaatgctggtacattacctgcagtgttttgaccaattttccctgagaagtttcccacactttgattgaacaatcttcagaactgcagtacacatacatttgttttagaattgtacatagcattttaagaactgtatctgtaaaatacagcattttgtacaaataaacatacagcatagcattaaacatcatttctagcaacactataaacattcgataaatgagataacagactaagtgattatgcatatgctttcagctacttaattttgcaacactataaacattcatgataaatgagataacagactaagtgattacgcatatgctttcagctacttaattttaaccatctaggaagaactcaaccacttttgcctcaagttatagctatctattataaataaacaaaatagtaaacggagtatgaggaaaagggaagtaactggaactcttagcctgatcaaggcctattcctaccagcaaaagtgtatcctttggctaacggaacgtcacttacgtattgggtttctcacaataactcaattaaataaatatcaataaatgtagggaattgtctgtatggcaccaataaaggattgtggcctgtgttgctggaagctatcttgatagttctttctcacaattgccaaagtagaagcagtaagcattcctatataaatagattccatctaaaatacagattgaatagaatctgaactgaatctgtcatgttcagaatttctagtcacaaacagtggtttgagatctcgattaacttatctgtcaaacatagcagcagaaacagaaatagagttcatacatcatatatatgcaggcgcaatacgattttactacaaatatattccctgtatcacaacgctggtatatgattcaatcctaaataatgcagtattctaaaacacagccctagccactgcctaacccgttaggcactaggcgctgggtagcgcattagatggtgcattaggtgactcaactaccttgcgtggtgttttcttgctatctcagtgttatatagtctattttttatgtaatatgcttgctagtttcttggattgactagttggtctgacctaggcctattaggcactaggcgccacccagccacccgactaacgcctagtgctttcttgcaccatggaataatggtgccatgatggcattataaaatttgttgttgttcctattttaacaaatccaatggcaataaccaaaagtgaccaagtacaaaagaaaaaaaaaagtcattatccttttatttcaaaatgctgaaaggactgcctatgtatgtctcccttttttgaaaaatcaaaaatataatatgtattttgtttctttaggacaagactttgaccaataattactccattagggtatagtttgtgtgacacaaaattgatgttattagattcgtatttgaaagtacttacttatgattacacttttgtaacgcataaataatatattacttgtaaagaaattgttagtcaaacccttgtcttaacgaaacaaaatacgccttataatagaaacagaaggtgtaatagtcttacccagtgtaaatcaaaccatctccaccccacttcacacaagtcactgaattagtgtgacctgtaagggcaatgacacacttccttgtggtcatatcccaaatacgtgcatcaccatccttacttgtacttacaaaacggcggcaaggagattgcaaatgaactggctcccaagatacagcagtaatccacttcctatgcccctaatgagtaaaggcaatgatcaatgagtactgcatggcaagaaaaaagaaacttctgcaatatataaagtacaactccatatactatttccaacattaagtgtatgtgaatccatggtactaagaaaaaagaactggagcagttatcttcaagtcaactaagtaactaacatatattttccaggttcacatgaattgacacatagggcagttaggtctgcaaatatgcaactgaataattcttatttcatacttctacaaaaactacaggttgaaagacaaagatgtcataatcttaccataagtggagtccccaattgcttgcctgttttcgggtcccataatataagttcccctgacttgcttccactaacaagatgattcccatcaggcgaccatgcaatgcagaggacccagtttttgtgtcctggaagatgcggtgttatttgataactttcaaatattaatggtatcaccctcaaaaacattggatataccgatatgcaaatggaactgtcaacaagactaagagtaccaaaaaattatactcaaatgcactggaagtaatgtctgataaacatgagttttgtcacaatgttacaacagtaaactcctattaggtcgtctgaacatccaatatcgacaaataaacaatttatgtaatgtgttaattacaagtaataaattatgttatcttttaatagtctcaacctactaaattcatctaaaaggaacaaacactgtatactatggtatcaaacattaagctttgattatccagtacatgttaaggttaggtctaccattaaaaaagattaattctgaaagtaacttacaggtctactgtgagttaggacatattgataaagataagcactgagttgctaaacacttttgcatcaatcatctaagatctctctcatgagaaattgttaatcaagtgttggtaagcactaggttaccgtaaagaacaataaccatggtgtaactctataaaacaagcaccaatgcaattacgggcattcgacttatttaaggtatgagaaaaatgacttgaaattatctgtatgcaagaatgctaagattcacctttgcatgtgaacaatggggtctgtgtgctcagatcccaaaaccttacagtggtatcaccagaaccactagccaaacatcttccatcaggactgaaggaaactgctagtacagcttctgtatggcctgcagatgataaattacatcattcgcagtggtataagaaagctcaaaatcgacataattgaggctggtactggtgctgtcaatgacaaataaaacaaggatgcaaagggtttgtctgtccgatgatattcccattgtaatcccagcaatatgagaacatgtcaaataaaagagtcctaaaattgtaatggaaaaagaaaacaatgaaatgaacgtaatccaaggtatacataccagcaattgtagcagagcatcggttgactggcctgatacggaaaattgcctgcggttgatatactatgcgcagggtaacctcaacatttgcttcatttaacaaaaatcaaaagatagaaatcagaaatgagatgcaacacctagtttgttttaattttcttaatcgacgaaaagaaatgtaggatgaacttgtgagtggagtctcaccattcttttgctgcatgtaagcaccaagctggacagagagttcttcatctccgatgtagaatgcatatggcagcttgtcctcctaaagtaaatgtttagagtgatgaggtcacacaagtaagtatgcaggacaactgccaaatgggagtacattacataggtgaagataaatgcaacgtgacaattagctcaaatatttcccctttactatattataattaaacttgtcataacgaattgtaaccttgtattttttcccttgttaaacattaaagggatttcctctctcaccaaagagttgtgcaagaaaaaaaaagttgcaccgtggtaactttcgtttgagtctatctctctcatctaattcctgcgtttttcctgcggttcaatcaaacggtcattcctgtatttttcctgcgttttgcaatcatctgttttacacttcattcttattaaaatcctacgtttttcctattcctacgttttctcaatcctgcgattcaaatgggccctaggaacaagtacagacagcttatgtgttgtctagataggcagattgatacattgtaatgtttctttctttctttctttataaaagaaaagaaaaaaaaggagaagaaataaaattggtccctaagccaatatcaatatgaaattAaaaaaaaaaggtatcaggcaggcaagcaggcaggcaagaagaagaagagtaaggaggaagagatagtggtacgttgtggagaagatggttgacgatctcctgcagctgcggcgggccgacgttgtgaggcaagtagagggcggcgccaaggtggtctccttcgggactgaccagctggcacatcacgctgcttccgctgctgctctcctgctgctggttctgattcgggctctccat
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| CDS seq | atggagagcccgaatcagaaccagcagcaggagagcagcagcggaagcagcgtgatgtgccagctggtcagtcccgaaggagaccaccttggcgccgccctctacttgcctcacaacgtcggcccgccgcagctgcaggagatcgtcaaccatcttctccacaacgaggacaagctgccatatgcattctacatcggagatgaagaactctctgtccagcttggtgcttacatgcagcaaaagaatgcaaatgttgaggttaccctgcgcatagtatatcaaccgcaggcaattttccgtatcaggccagtcaaccgatgctctgctacaattgctggccatacagaagctgtactagcagtttccttcagtcctgatggaagatgtttggctagtggttctggtgataccactgtaaggttttgggatctgagcacacagaccccattgttcacatgcaaaggacacaaaaactgggtcctctgcattgcatggtcgcctgatgggaatcatcttgttagtggaagcaagtcaggggaacttatattatgggacccgaaaacaggcaagcaattggggactccacttatggggcataggaagtggattactgctgtatcttgggagccagttcatttgcaatctccttgccgccgttttgtaagtacaagtaaggatggtgatgcacgtatttgggatatgaccacaaggaattctgaagattgttcaatcaaagtgtgggaaacttctcagggaaaattggtcaaaacactgcagggtcatggtcactgggtcaattcacttgctttgagcaccgagtatgttttgcgcacgggggcatatgaccatactggcaagacatattcaacagcagaggaaatgaaggaggcagctcttgcgagatacaagaagatgaggggcaatgctcctgagagactagtttctggttctgatgattttacgatgtttctctgggaaccaacaattagtaaacagcccaaagcccgcatgactggtcatcaaaagctcgtaaaccatgtctacttctctcctgacgggcagtggctggcaagtgcctcctttgacaaatctgtcaagttatggaatggcattacaggcaaatttgttgcagctttcagagggcatgttgcagatgtctaccagatcagtaggcttctattgagtggaagcaaggattccaccctaaaggtctgggatattcgaacacgcaagttgaaacaggatttgccagggcacgcagatgaggtgtacgctgtggattggagccctgacggcgagaaggttgcatctggaggcaaggacagggtcctcaagctatggatgaactag
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| Protein seq | MESPNQNQQQESSSGSSVMCQLVSPEGDHLGAALYLPHNVGPPQLQEIVNHLLHNEDKLPYAFYIGDEELSVQLGAYMQQKNANVEVTLRIVYQPQAIFRIRPVNRCSATIAGHTEAVLAVSFSPDGRCLASGSGDTTVRFWDLSTQTPLFTCKGHKNWVLCIAWSPDGNHLVSGSKSGELILWDPKTGKQLGTPLMGHRKWITAVSWEPVHLQSPCRRFVSTSKDGDARIWDMTTRNSEDCSIKVWETSQGKLVKTLQGHGHWVNSLALSTEYVLRTGAYDHTGKTYSTAEEMKEAALARYKKMRGNAPERLVSGSDDFTMFLWEPTISKQPKARMTGHQKLVNHVYFSPDGQWLASASFDKSVKLWNGITGKFVAAFRGHVADVYQISRLLLSGSKDSTLKVWDIRTRKLKQDLPGHADEVYAVDWSPDGEKVASGGKDRVLKLWMN |
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| Function | Notchless protein homolog [UniProtKB/Swiss-Prot:Q9FLX9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_10g0000230 | OsNaBo_10g0000230.01 | Chr10 | 519962 | 528786 | - | NAM | ||
| CDS seq | atggagagcccgaatcagaaccagcagcaggagagcagcagcggaagcagcgtgatgtgccagctggtcagtcccgaaggagaccaccttggcgccgccctctacttgcctcacaacgtcggcccgccgcagctgcaggagatcgtcaaccatcttctccacaacgaggacaagctgccatatgcattctacatcggagatgaagaactctctgtccagcttggtgcttacatgcagcaaaagaatgcaaatgttgaggttaccctgcgcatagtatatcaaccgcaggcaattttccgtatcaggccagtcaaccgatgctctgctacaattgctggccatacagaagctgtactagcagtttccttcagtcctgatggaagatgtttggctagtggttctggtgataccactgtaaggttttgggatctgagcacacagaccccattgttcacatgcaaaggacacaaaaactgggtcctctgcattgcatggtcgcctgatgggaatcatcttgttagtggaagcaagtcaggggaacttatattatgggacccgaaaacaggcaagcaattggggactccacttatggggcataggaagtggattactgctgtatcttgggagccagttcatttgcaatctccttgccgccgttttgtaagtacaagtaaggatggtgatgcacgtatttgggatatgaccacaaggaattctgaagattgttcaatcaaagtgtgggaaacttctcagggaaaattggtcaaaacactgcagggtcatggtcactgggtcaattcacttgctttgagcaccgagtatgttttgcgcacgggggcatatgaccatactggcaagacatattcaacagcagaggaaatgaaggaggcagctcttgcgagatacaagaagatgaggggcaatgctcctgagagactagtttctggttctgatgattttacgatgtttctctgggaaccaacaattagtaaacagcccaaagcccgcatgactggtcatcaaaagctcgtaaaccatgtctacttctctcctgacgggcagtggctggcaagtgcctcctttgacaaatctgtcaagttatggaatggcattacaggcaaatttgttgcagctttcagagggcatgttgcagatgtctaccagatcagtaggcttctattgagtggaagcaaggattccaccctaaaggtctgggatattcgaacacgcaagttgaaacaggatttgccagggcacgcagatgaggtgtacgctgtggattggagccctgacggcgagaaggttgcatctggaggcaaggacagggtcctcaagctatggatgaactag
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| Protein seq | MESPNQNQQQESSSGSSVMCQLVSPEGDHLGAALYLPHNVGPPQLQEIVNHLLHNEDKLPYAFYIGDEELSVQLGAYMQQKNANVEVTLRIVYQPQAIFRIRPVNRCSATIAGHTEAVLAVSFSPDGRCLASGSGDTTVRFWDLSTQTPLFTCKGHKNWVLCIAWSPDGNHLVSGSKSGELILWDPKTGKQLGTPLMGHRKWITAVSWEPVHLQSPCRRFVSTSKDGDARIWDMTTRNSEDCSIKVWETSQGKLVKTLQGHGHWVNSLALSTEYVLRTGAYDHTGKTYSTAEEMKEAALARYKKMRGNAPERLVSGSDDFTMFLWEPTISKQPKARMTGHQKLVNHVYFSPDGQWLASASFDKSVKLWNGITGKFVAAFRGHVADVYQISRLLLSGSKDSTLKVWDIRTRKLKQDLPGHADEVYAVDWSPDGEKVASGGKDRVLKLWMN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.539418 | 6.137557 | 2.000235 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0104500 | RBH | 0.157795 | 2.531988 | 1.500547 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g01540 | RBH | 0.089899 | 1.513845 | 0.592318 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0104500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0000230 | RBH | 0.260829 | 2.481128 | 2.306905 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0000230 | RBH | 0.000000 | 0.000000 | 0.185908 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0000230 | RBH | 0.286992 | 3.930327 | 1.424014 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0000250 | RBH | 0.116090 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0000190 | RBH | 0.000000 | 0.000000 | 0.993838 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0008100 | RBH | 2.1212955 | 5.9828195 | 3.2970665 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0000210 | RBH | 0.000000 | 0.078779 | 0.463670 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0007100 | RBH | 3.0335555 | 4.737262 | 7.8230145 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0000220 | RBH | 0.049191 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0000230 | RBH | 0.101390 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0000230 | RBH | 0.000000 | 7.548411 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0000190 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0000210 | RBH | 0.0 | 1.174370 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G000240 | RBH | 0.150005 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0019320 | RBH | 0.726930 | 10.342424 | 1.850067 |
