Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_09g0016840 | OGI:09058870 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr09:20622155-20626352 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcacagaagctcattcaggtttgtcagatgtggtactCctgataaaccatctttactatcaagtagttctttgcagtcgttcacccacagttgttcaagctcaggcatcgcgccattctcgatcgccaccgattcaatgTtcttcagcccatcaatGtcaaggaacttgagttttgggaatgtgccaggaccaaaatgcagtgaataccctacataggagttgtcccacaagccgagaaatgctaggttgcgtaGcttcccgaggtgcaTgatttccccctgcttcAattgtgtccccagcagcttcagcttcgccagatcattgagtgaaCcaatccatttaggcaacctgactagattgccatatagCctaAgtgaaagaagatgttttggtgctgcgaattcactttcagcaagaaactttagggaatcagagcgcagctcgagccgctgcaaacgacttagcttctctattgacttgcataagtcctgcccttcttCcttaaggacacctgagactcctAaccttCgcaagtttgtcagcttcttaatcttccctaCcactccattgccaTggccaacattgatcacacccaacaTgtgcaaatcccTtagcttctcaactccctcaggagctcTTAcactaaCtcgatccaagctagaaaTcccgcaataatcactgctgttgcaatAgaagcatgataacatgttgcccagctggttggccttgcgattatctgtctccggctgttccaccTtgtgcagCaactcttttgagaagttgaCgccagcaagaagatagCgtagcTtctcaagttttgcaattccgtcagggagctgtgtcacctttgtgtcttggAtgtctagcgtctcgaggtaccgaaGgttctgcaaagatggaagctttgatatctctgtacctctcaaaCAaagataccttagatggtgaagctctcctacgtgcctgaggtcttcattcttcaggttaagtgaatcttccaggtccagaactcgcagaagacgcattttaggagatatgagagaagcagggcaatcccCaaacactgttagtgatcgaacatacgaaaaaTttAtattttctagcctcTaatccctccttttCcacctggataCtaccagatggcgTatcttactttgtggAacctcattgcagtgTttcttgatgatgaagagttggttctCctcaatggacttggacaggatgatctgtagcaccatgctgtgaacccgacagcgatccacactcacgctGgggctaatcctcttcttggagggttggatcatacttctgttgatgagctcattgtagaaacgctgccccacttcctccaccggcatatcacggttctttgctatgtacccttctgccatccaacgCctcaacaagcgggtgcatctgatctcaTggttctcagggaaaatactaaggtataagaagaTtgatttcaagtaatatggcaagccatcataacttgaaacaatcactttagtgatgttacgaaggtcagacgactccagctctgcaCcaaggtgttcaTCcaactttatccactctatgcctgttttgggtctattggctaacagacctcctatagtggatatggccagtggaagCccccggcatctctttaagataggaccagctagatcctccatttcCTtCtccaatatgtactcggttgaTttgtagacctgcaaatgatGgagaagcaaaagatacataagtactacAaattgtacaattgaattgccaaggaCctagaggtccagttcttgtaatttgtaaaccatcatgtgaacatgccatagtagttcaatgtaggaatgttcctggagttttctcataaatgttgaaattagAaaataacacacTTtatttactaatatatagatTtactaatatAaaggtctcactgaaaatgacATGattgttttttttcttgcaacacaatatttattgcataaaTgtagatcacagTAttaagattctttagtctataaaagcaaaaaaacctgaaaACatctgcaaacgaccattgtctaaaacaTtctatttctcTgtattatgtatcacccagcaacaaatgcAacccgagtagataacgccacattcttgttggttgtgtgcatccatcatgcatgcaaacgctatcaacactgggaattaaaaacgaaaaacaaaccttcgaagtcgcatatgccggtgctccatggagggacactggTggcacctactatatcttctagtatttcacgcaggaatttcatcgaacaggTtgagggcgtcgaactgtgaagtctcagctgttgtcgtgcgtgagtggctacagtatcgcagacttgcaggactcgggaaggcggcactgtaggcttccctcgtatccttcccgactccgccgccGgccgccggccgctcgcgccgccgtcgccacttggccctcccgcgccatgcggagccgtgggtggcccgaTgggtgaTatttgggcctaatttaaaggaggtgtggatggAcagttcgggctttcttgggcttAaaaagatggcctgcttatgggCccgatggtgggttggcccatcggtctgaattgcgaaccccagtttttataagTtacaccggtttttacactaTtgtttttcctaaTtacatatttataaaacttagtaTtaaaatataATtatatgatggtgctttttttatgatgaatctatcaatatcattttcacacagTacattctaatgTttttaatctattacttcttccgggttgataatacttgttgtctctataaggatacggtctaaaaaacaactatatcataTtttctattacactgtatatggaaatatttacAtgtatataatttttcccgtgaaaagtatataattttactgaaATaaTttataagactattctacacatatAatctctataTttctaagacaaatattgtaagagattattcatagtagaagattttTAaaTttgaTttcatacttattcAaaacgataaatattatcagtttagagagagtaatgatttaaactatcatggtgtaactacacaactacacgtgttatatgacgcctgtcatataCtatatgaaaagaaaTataataattgctcgaaaatgtacttttgtgatgttcttatttttttgtgaattttcacttgaaaTATttttttcaagaacttgtactaaaaaATgttgacatagaagactgaaatggtcaaggcctcaagggaaggTaccttctgacaaaagagatccTtggactcttcccgCccaagcggcctgagctcgtagacatggccgtgcccctcgcgcacgagccccgcgcagtggcgcgcgacgtcctcccgccgcgtcgtcaccaccacgcggctgcccttgccgccgccgccgccgtcgacgtgcagcaccggCcagatgtgctcccactcctcccggctgtgcaggtcgtcgacgatgatcacgtaccgcttctcccggaggtaggcgtgcaCgtcctggtccttgccgacggcgaggtggcgccgcagccgccgcacgaactcgtcggcgctgtcgagcgggtgcggcaccgtcaCccacgcgccgcagtcgaaggcgtcgaggagctccgggtcgttgtacaCcatccgcaccagcgacgacttccccatcccgcccatcccccacaccgAcaccaCccccagcgcgccgcctccgcagCcgacgCcgacgtcgccgccgcagccgcagccggagaggacgagtgccgtcacctccgCcttctCccgcgcccgcccgatgatgtccgactcctggaacgccagctccgccgagtagtgctgCccatcgtggtcgtgaagctgctgctggtcgtcggaggcgccgccgccgcgTGTgccgcgcgggtgttcgacgactatgcggtaccgaaggaagcgctggttgagctcctcgacgctggccttcagctcccggatcctcgccgcgacgcggtggcgctcggcgatgcgccacgggagccaccacgacgacgaggacgacgacgacgtgtcggcgaagagggcgaagtcgaggagggagtcctcgacgtcgtaggcgaggtcgcgcacctgcttcaCccacgtccgcacggtgtcgtcggTgtcggggttcgccgtggccaccttgaggaacgacctcat
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| CDS seq | atgaggtcgttcctcaaggtggccacggcgaaccccgacAccgacgacaccgtgcggacgtggGtgaagcaggtgcgcgacctcgcctacgacgtcgaggactccctcctcgacttcgccctcttcgccgacacgtcgtcgtcgtcctcgtcgtcgtggtggctcccgtggcgcatcgccgagcgccaccgcgtcgcggcgaggatccgggagctgaaggccagcgtcgaggagctcaaccagcgcttccttcggtaccgcatagtcgtcgaacacccgcgcggcACAcgcggcggcggcgcctccgacgaccagcagcagcttcacgaccacgatggGcagcactactcggcggagctggcgttccaggagtcggacatcatcgggcgggcgcggGagaagGcggaggtgacggcactcgtcctctccggctgcggctgcggcggcgacgtcgGcgtcgGctgcggaggcggcgcgctggggGtggtgTcggtgtgggggatgggcgggatggggaagtcgtcgctggtgcggatgGtgtacaacgacccggagctcctcgacgccttcgactgcggcgcgtggGtgacggtgccgcacccgctcgacagcgccgacgagttcgtgcggcggctgcggcgccacctcgccgtcggcaaggaccaggacGtgcacgcctacctccgggagaagcggtacgtgatcatcgtcgacgacctgcacagccgggaggagtgggagcacatctgGccggtgctgcacgtcgacggcggcggcggcggcaagggcagccgcgtggtggtgacgacgcggcgggaggacgtcgcgcgccactgcgcggggctcgtgcgcgaggggcacggccatgtctacgagctcaggccgcttggGcgggaagagtccaAggatctcttttgtcagaaggtctacaaAtcaaccgagtacatattggaGaAGgaaatggaggatctagctggtcctatcttaaagagatgccggggGcttccactggccatatccactataggaggtctgttagccaatagacccaaaacaggcatagagtggataaagttgGAtgaacaccttgGtgcagagctggagtcgtctgaccttcgtaacatcactaaagtgattgtttcaagttatgatggcttgccatattacttgaaatcaAtcttcttataccttagtattttccctgagaaccAtgagatcagatgcacccgcttgttgagGcgttggatggcagaagggtacatagcaaagaaccgtgatatgccggtggaggaagtggggcagcgtttctacaatgagctcatcaacagaagtatgatccaaccctccaagaagaggattagcccCagcgtgagtgtggatcgctgtcgggttcacagcatggtgctacagatcatcctgtccaagtccattgagGagaaccaactcttcatcatcaagaaAcactgcaatgaggtTccacaaatgtttGgggattgccctgcttctctcatatctcctaaaatgcgtcttctgcgagttctggacctggaagattcacttaacctgaagaatgaagacctcaggcacgtaggagagcttcaccatctaaggtatcttTGtttgagaggtacagagatatcaaagcttccatctttgcagaacCttcggtacctcgagacgctagacaTccaagacacaaaggtgacacagctccctgacggaattgcaaaacttgagaAgctacGctatcttcttgctggcGtcaacttctcaaaagagttGctgcacaAggtggaacagccggagacagataatcgcaaggccaaccagctgggcaacatgttatcatgcttcTattgcaacagcagtgattattgcgggAtttctagcttggatcgaGttagtgTAAgagctcctgagggagttgagaagctaAgggatttgcacAtgttgggtgtgatcaatgttggccAtggcaatggagtgGtagggaagattaagaagctgacaaacttgcGaaggtTaggagtctcaggtgtccttaagGaagaagggcaggacttatgcaagtcaatagagaagctaagtcgtttgcagcggctcgagctgcgctctgattccctaaagtttcttgctgaaagtgaattcgcagcaccaaaacatcttctttcacTtagGctatatggcaatctagtcaggttgcctaaatggattgGttcactcaatgatctggcgaagctgaagctgctggggacacaatTgaagcagggggaaatcAtgcacctcgggaagCtacgcaacctagcatttctcggcttgtgggacaactcctatgtagggtattcactgcattttggtcctggcacattcccaaaactcaagttccttgaCattgatgggctgaagaAcattgaatcggtggcgatcgagaatggcgcgatgcctgagcttgaacaactgtgggtgaacgactgcaaagaactacttgatagtaaagatggtttatcagGagtaccacatctgacaaacctgaatgagcttctgtga
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| Protein seq | MRSFLKVATANPDTDDTVRTWVKQVRDLAYDVEDSLLDFALFADTSSSSSSSWWLPWRIAERHRVAARIRELKASVEELNQRFLRYRIVVEHPRGTRGGGASDDQQQLHDHDGQHYSAELAFQESDIIGRAREKAEVTALVLSGCGCGGDVGVGCGGGALGVVSVWGMGGMGKSSLVRMVYNDPELLDAFDCGAWVTVPHPLDSADEFVRRLRRHLAVGKDQDVHAYLREKRYVIIVDDLHSREEWEHIWPVLHVDGGGGGKGSRVVVTTRREDVARHCAGLVREGHGHVYELRPLGREESKDLFCQKVYKSTEYILEKEMEDLAGPILKRCRGLPLAISTIGGLLANRPKTGIEWIKLDEHLGAELESSDLRNITKVIVSSYDGLPYYLKSIFLYLSIFPENHEIRCTRLLRRWMAEGYIAKNRDMPVEEVGQRFYNELINRSMIQPSKKRISPSVSVDRCRVHSMVLQIILSKSIEENQLFIIKKHCNEVPQMFGDCPASLISPKMRLLRVLDLEDSLNLKNEDLRHVGELHHLRYLCLRGTEISKLPSLQNLRYLETLDIQDTKVTQLPDGIAKLEKLRYLLAGVNFSKELLHKVEQPETDNRKANQLGNMLSCFYCNSSDYCGISSLDRVSVRAPEGVEKLRDLHMLGVINVGHGNGVVGKIKKLTNLRRLGVSGVLKEEGQDLCKSIEKLSRLQRLELRSDSLKFLAESEFAAPKHLLSLRLYGNLVRLPKWIGSLNDLAKLKLLGTQLKQGEIMHLGKLRNLAFLGLWDNSYVGYSLHFGPGTFPKLKFLDIDGLKNIESVAIENGAMPELEQLWVNDCKELLDSKDGLSGVPHLTNLNELL |
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| Function | Disease resistance protein RPM1 [UniProtKB/Swiss-Prot:Q39214] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_09g0016840 | OsNaBo_09g0016840.01 | Chr09 | 20622155 | 20626352 | - | NAM | ||
| CDS seq | atgaggtcgttcctcaaggtggccacggcgaaccccgacAccgacgacaccgtgcggacgtggGtgaagcaggtgcgcgacctcgcctacgacgtcgaggactccctcctcgacttcgccctcttcgccgacacgtcgtcgtcgtcctcgtcgtcgtggtggctcccgtggcgcatcgccgagcgccaccgcgtcgcggcgaggatccgggagctgaaggccagcgtcgaggagctcaaccagcgcttccttcggtaccgcatagtcgtcgaacacccgcgcggcACAcgcggcggcggcgcctccgacgaccagcagcagcttcacgaccacgatggGcagcactactcggcggagctggcgttccaggagtcggacatcatcgggcgggcgcggGagaagGcggaggtgacggcactcgtcctctccggctgcggctgcggcggcgacgtcgGcgtcgGctgcggaggcggcgcgctggggGtggtgTcggtgtgggggatgggcgggatggggaagtcgtcgctggtgcggatgGtgtacaacgacccggagctcctcgacgccttcgactgcggcgcgtggGtgacggtgccgcacccgctcgacagcgccgacgagttcgtgcggcggctgcggcgccacctcgccgtcggcaaggaccaggacGtgcacgcctacctccgggagaagcggtacgtgatcatcgtcgacgacctgcacagccgggaggagtgggagcacatctgGccggtgctgcacgtcgacggcggcggcggcggcaagggcagccgcgtggtggtgacgacgcggcgggaggacgtcgcgcgccactgcgcggggctcgtgcgcgaggggcacggccatgtctacgagctcaggccgcttggGcgggaagagtccaAggatctcttttgtcagaaggtctacaaAtcaaccgagtacatattggaGaAGgaaatggaggatctagctggtcctatcttaaagagatgccggggGcttccactggccatatccactataggaggtctgttagccaatagacccaaaacaggcatagagtggataaagttgGAtgaacaccttgGtgcagagctggagtcgtctgaccttcgtaacatcactaaagtgattgtttcaagttatgatggcttgccatattacttgaaatcaAtcttcttataccttagtattttccctgagaaccAtgagatcagatgcacccgcttgttgagGcgttggatggcagaagggtacatagcaaagaaccgtgatatgccggtggaggaagtggggcagcgtttctacaatgagctcatcaacagaagtatgatccaaccctccaagaagaggattagcccCagcgtgagtgtggatcgctgtcgggttcacagcatggtgctacagatcatcctgtccaagtccattgagGagaaccaactcttcatcatcaagaaAcactgcaatgaggtTccacaaatgtttGgggattgccctgcttctctcatatctcctaaaatgcgtcttctgcgagttctggacctggaagattcacttaacctgaagaatgaagacctcaggcacgtaggagagcttcaccatctaaggtatcttTGtttgagaggtacagagatatcaaagcttccatctttgcagaacCttcggtacctcgagacgctagacaTccaagacacaaaggtgacacagctccctgacggaattgcaaaacttgagaAgctacGctatcttcttgctggcGtcaacttctcaaaagagttGctgcacaAggtggaacagccggagacagataatcgcaaggccaaccagctgggcaacatgttatcatgcttcTattgcaacagcagtgattattgcgggAtttctagcttggatcgaGttagtgTAAgagctcctgagggagttgagaagctaAgggatttgcacAtgttgggtgtgatcaatgttggccAtggcaatggagtgGtagggaagattaagaagctgacaaacttgcGaaggtTaggagtctcaggtgtccttaagGaagaagggcaggacttatgcaagtcaatagagaagctaagtcgtttgcagcggctcgagctgcgctctgattccctaaagtttcttgctgaaagtgaattcgcagcaccaaaacatcttctttcacTtagGctatatggcaatctagtcaggttgcctaaatggattgGttcactcaatgatctggcgaagctgaagctgctggggacacaatTgaagcagggggaaatcAtgcacctcgggaagCtacgcaacctagcatttctcggcttgtgggacaactcctatgtagggtattcactgcattttggtcctggcacattcccaaaactcaagttccttgaCattgatgggctgaagaAcattgaatcggtggcgatcgagaatggcgcgatgcctgagcttgaacaactgtgggtgaacgactgcaaagaactacttgatagtaaagatggtttatcagGagtaccacatctgacaaacctgaatgagcttctgtga
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| Protein seq | MRSFLKVATANPDTDDTVRTWVKQVRDLAYDVEDSLLDFALFADTSSSSSSSWWLPWRIAERHRVAARIRELKASVEELNQRFLRYRIVVEHPRGTRGGGASDDQQQLHDHDGQHYSAELAFQESDIIGRAREKAEVTALVLSGCGCGGDVGVGCGGGALGVVSVWGMGGMGKSSLVRMVYNDPELLDAFDCGAWVTVPHPLDSADEFVRRLRRHLAVGKDQDVHAYLREKRYVIIVDDLHSREEWEHIWPVLHVDGGGGGKGSRVVVTTRREDVARHCAGLVREGHGHVYELRPLGREESKDLFCQKVYKSTEYILEKEMEDLAGPILKRCRGLPLAISTIGGLLANRPKTGIEWIKLDEHLGAELESSDLRNITKVIVSSYDGLPYYLKSIFLYLSIFPENHEIRCTRLLRRWMAEGYIAKNRDMPVEEVGQRFYNELINRSMIQPSKKRISPSVSVDRCRVHSMVLQIILSKSIEENQLFIIKKHCNEVPQMFGDCPASLISPKMRLLRVLDLEDSLNLKNEDLRHVGELHHLRYLCLRGTEISKLPSLQNLRYLETLDIQDTKVTQLPDGIAKLEKLRYLLAGVNFSKELLHKVEQPETDNRKANQLGNMLSCFYCNSSDYCGISSLDRVSVRAPEGVEKLRDLHMLGVINVGHGNGVVGKIKKLTNLRRLGVSGVLKEEGQDLCKSIEKLSRLQRLELRSDSLKFLAESEFAAPKHLLSLRLYGNLVRLPKWIGSLNDLAKLKLLGTQLKQGEIMHLGKLRNLAFLGLWDNSYVGYSLHFGPGTFPKLKFLDIDGLKNIESVAIENGAMPELEQLWVNDCKELLDSKDGLSGVPHLTNLNELL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 2.984697 | 0.218931 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0517200 | RBH | 0.815814 | 0.654953 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g34160 | RBH | 0.537215 | 0.438964 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0517200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0016730 | SBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0016720 | SBH | 0.064271 | 0.376873 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0016960 | RBH | 0.332376 | 0.0 | 0.164246 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0016710 | RBH | 0.024675 | 0.030717 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0016840 | RBH | 1.026086 | 0.000000 | 1.033153 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0016710 | SBH | 0.073859 | 0.053962 | 0.047253 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0326500 | SBH | 0.3951525 | 2.7131705 | 0.0908665 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0016710 | RBH | 0.020002 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0016510 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0016620 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0016470 | SBH | 0.115136 | 0.0 | 0.040342 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0016590 | SBH | 0.035632 | 0.248925 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G017040 | RBH | 0.0 | 0.296771 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0023450 | SBH | 1.838243 | 0.0 | 0.790160 |
