Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsNaBo_09g0015430		OGI:09036750 \| 16/16			NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)			Chr09:19680470-19687057		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		ATG16, OsATG16
DNA seq		agagaggaagcgacagcgagcgaggcgaggcgaggcgaaggcgagcgctcccatctcctctccacttttccgcgccgcgtgctccgaggcggggagggaggcaggttcgcgcggatctcgcgatgcggatcgcgaggctgctgctgctgctggcgctcgtcgccggggcggcggtggcgcaggacgcggggctcggggacgtggcggcggaggagacgaccgcggcgagggccaaggaggaggcggcgctcgcggccgagctgagccagctcagggcgaagatctccgccttaggtgcgtgcgtgtaatgtctacgctcgattcgaattcgtgacgcttatgcgccccccgcttttgctgcttcatttggggttcgatgggTtttagttgacctgttagggttttggaggcgtttagatgcgggcggctagggggagcttacgcgattgaatgggcaatgtggggagcgattcggtgatttggtgatttggaatgggggcttaggtgttttcagtggtttagagtgagggggttgatgctgatttggaattgttggaggaatgctaggttgttctgggagtatctccttaaatggtttcaattctgagcaaaagccttgtggtcattacctgcatttgctgatttggcctgtaacgggtcatgaatttcccgtgagatgtaccggaattttcagtctagaaaaggatgcacgtgaaatgagtgacccttgcttggaactaggttataatgctcgaggaagcttctgctattagggaatccagtaagtctgaagaagttagctaccagcatgtccctagcagatgcatatttagttaccgagtctcgataagttgtgacttgagagtggattgtatcaatttctggtaattctatatggacctccTttcggggTttgttataaagcctgaatcatatgatctttcgactaggtcatttaaagcatgcatgccgcatgattcttccaaaagacatcagtttagtgtagaagagcttgattattttcatcctgcagagtcgagcataacaaaacagacccaggagttgaagagcaaggatgacggcatccagaagctggaaaagcttattgaggagaagtcaaagaaaattgctaccctgcagagtgagataacttcacttgaggtatctattgacaaaagataatacttttgaagcattttttttacactcttgaagtgattatagtccttttccatgtcatatacagaaaaagagatctttagctgcagaggagcaggcaggcaaggccaatgcccgggctattgagcttgagaagcaggtagcggaagcatgatttgtccagatttctagtgtgacaattaggatactgtgttttctgattcaacctcttccagattgaaaaactgaagaaggatattgaagcacaaaatagcaagaaatcaactgtggaggctagggctggtgatgcagataagaaggtgcaagagctgaatgctaagctggagaaagtaagtatgcagctgccctgattttttattcctactgcaatggttttaaatttctttatttccgcaaagaaaatttgcacacgtgcatttgctgaatatcttgaatcgcaatgcattcctgtgaaaacttaaggtgatatttctctagcacggtattgccaaaagttgatggagtacttcatgaagtaacttcaaatacaggctagatgagcctgtatgttttcatttctttcgctctcctgttaaaaagttttggtggaaacatgggtatatcccttcatgatcttttaattatctgttgaataacgttattatattttaattgttcttaatatatttacagcacctctcttttttggttacagttctccttatctttatattatactgttcttaatagctccaaaagacaagtgatgagcaaaagcgtaggattcagaagactgaacatgctcttaaagttgcagaggtttgtatcgatgcgattactctgatatagtttcttggtgccattctcttcagtctttgcttctcatgttcttaggaggagcttatgagggtgcagttagaaacaacaacacaattaaatcagctgaaagaggtaaatattcttcttctgcatctgctatctgttttgatttagatttgttctatgccagtaagataacattactcagactttaggctgccctagctatttactccgcaaacttgacatgccatccaaaccaatgttaaactggacttgaggggtaccggtgacttttgaacaatatgttcaaaatgcagcctagttggtcatctcagctgttaaattctgacggaattgtgcgtcgcaatactcttctaaccactgaaccttattatgaatgtatcatgtatgatttGgtacctgagaattaggaactcctgactgttagatgatgattgagcatataatgagtgtaatatttctattgttttccttagattaacagggtagagcccctattacatctgtagaataaatgagacaaaagtaatcttcccattgttacatggaagtcacctactactttcagtctgatcactgcaataagtgtcgtactgaactaccagttaatacttatgcaggttcatggagcttggttgccaccttggttagtgacacacacagctcgtgctaaggtataactgatgataaagtataaatatctcttcttagtttgcttgttctcatcagtcattgacttgtgcaggaaatgatgttaagtcactggaatgaacatgggaaacctgctgttaacagtttattgcagaaggtgctaccgagcatattactttagttaaacattgaaaatgtcaattatgtcatttatgcagtcgtttatattctgtgaactaaatcactgcaggcatcagagaaatcagttcaggcaaagaaatgggccgagccacatgtagaagctgccaagacggtaatattattacctgttcctgatactgcagttcaagaaattggttgcagagtaaaactgagatattttaaaaattgcattaatcacacgtatttatggacaactcttgatgttatcacgtgatatagcatcacaagtctgttaagtttttgactctttgatcatctttcactaacaatggcatttaccttttgaagaaatggatacctgttatcaaggaaaaatgggttaccatgaagacaaacgcagagccttatgtgcaaaaggtctcagcaaaatctatagagctctatcaagcatctaaggatgttgtcttacctcatgttgtgaaagcacataagattgctgatccctacttccaggtacatctaaggtcctgccgtttcaagaattcacagttgtacatgccaggaggcagtttgattatgataggataggaggcagcttcttttttagagtatatataatcattgatttataatcagatgattgcgtcttttttcaggaagccaagaaagtatccaaaccttacattgatcaagttgctaaggccactaagccacatgtcgagaaaattagaatttatttgaagccttatacaaaaagagcagtccatatatatggaaattttcttgagaaggctacagcttatcatcaacaggtgattgttatttcttttttcccttccaTtttttcctatgcattgcagcttattggtttacatactttatgcttctgccatacttcccccattgcttttgaattcagaaactctttgcttcttagggtagctgtgattgatcttaattagtagcatgtcaagtaacttccatagttccatatgTtttttttttatcctactggagaataagactgtatggaacacaccttttgtattattgtaataatagtgattcggtgcattttccctagtgactgctgaggtcttacctcttgagagttcttcattttaatgcttataaatgctccaaattctattatttctggtggttgatgcttggtgttggtcatgctatggatgtaacacaagtacttggataaaatcacctccatagtgtgatgttcctttgtgcaagttcttccaaaatttccttagctaattgattggacaaaacagtgtcgtgatactcaaacctcattctgtctgttctctttgcatacagtatatatcttaaactactgcaattgtcttattgtgtactgtttggtagatgcatggaataccatttcttctgtgtggtacactacatatcggtttcaagatatattccggaatctcagatatgttctttttccaggctcaagcaactgtcttggactacctgcaccaacatgaattgacaaaagaatttgcgactgaagagttggcctggtacctggtagggcactaatagaactgtgcttcaagtggttttaagtatgaaaggccataatataatgtcttaactacctttgcaggcttctgctttgctgattatgcccatttatgttttttacaatgtcctggttgaaacattctggttggtatttctgttttctatttgcttatcagctagtatatctgttttttatttgttatttaagcttaatattttcatttccttgtagctccaagaagaagaagaaagccacacggaatgttaatgctaaccatggccatcggaaacacaaacgccggcatgctgacaaatagaccatatatgttggattttggtcatgtctggtctgccacattgtagttggagaaggtactgcaccctttgttcctatttaagtggtaaaatccgattcatgtaatgtgctctagctcgcgatatactgcttgtggcatggaatcttggatcaatcgaaccatatgcttgcccgttttctctgaagttacagagtctcttctcaattcatacggtataaaaagaaagtatgcttgaacggatttttgttacaaatgtcagtatgacttcgaactaaaagctagaccagagtgaggtttataaaggcctaaacagattattataggcttctgctattggcttgacattgatttgtactgtgcatttgtgcagatctcggatggcatacagagtaggatatcccgggccatcgctaagcattggtttgtattattaacgagttacactagatcacacaagaactatgtatttttgccccccatgtatggacctagttgtaattgcggttctgtaactgtcgatctgcccttcgctgagtaggatttagtggacatggaggctgtatgtgcttattcattttattggtcatgtcttctagtttttgttcatgcgttttccttagagcttgtgtgtggttgtgtaatccctgcctcgttttctgggctctcacttactgaaactgtagtattgtacttcttcatgtttaacagacagaattcagcgtcgaggctgtgattgatttctttctgatatgcatgggatgcacggatgtggagcttgctagttgctactacttttgttggttcttcatgcatgtaagctctggagacatgatgattaatctggctgtcagatctaatctacttctcacgtcgatcctctttttttttttttgctgccaaagagtaatagtaggaataagttcaccggccgtccctcaactttacaccgagattttctgaggttccttaactacaaaaccagaaatgtgtacccctgaactatgtaaaaccgtacataaaaggtcccaaggcagtatagaggtctggtttcgctgacgtggcatcttagtcagcaaaaataattaaaattaatatgtgggactcacatgtaagtgagaaaatggtatgggtatcacatttctctccttttcttttcctttgtcttctcttcttctctccaggttctctcgagcaggcgcggcaacagaaggggagaggtgtccggcggcggagcggggacggcagcggcgggagagggagagaggtggccaatgtgacagcagcagcgggagaggataggtggcgtccggcgccacggcaagctcagcggcggagatattcgaacgcgccgggtgctcgacctcgggccctgtcgccggcaagtgacacgctctccccgtcgaccctctctccctccctcgcatactcgtcctacaccaccaccctctccgcgctctcccgccacggccgcccccgggaggccctctccctcttctccacctccgcggtcgttcgccccgacgccgagctcctctcctgtgtcatttcctgctgccgccgcgcatccgccttcctccccgctcgcgccgcgcacgcctacgggataaagaccgcgccgctgctggccttctacgcctcggccagtctggcgctcgtggcgctgtatgcgatgtgtcggaaggtgagctcgccgccgccgagctcgccgtcgccggctgcctcctctccctccgccgctgctgtatgcactgacgatttgttcaccactaggagcgtcggtgtttgctcgccggagaagaagctggtggtgccggagagcgtgtgcgggcggccgaccggccgctgggactgtagttccaccacgcctccggcgacctgtacgtggctgacgcgtacctgggcctcctga More
CDS seq		atgcggatcgcgaggctgctgctgctgctggcgctcgtcgccggggcggcggtggcgcaggacgcggggctcggggacgtggcggcggaggagacgaccgcggcgagggccaaggaggaggcggcgctcgcggccgagctgagccagctcagggcgaagatctccgccttaggaatgctaggttgttctgggagtatctccttaaatggtttcaattctgagcaaaagccttgtggtcattacctgcatttgctgatttggcctctccaaaagacaagtgatgagcaaaagcgtaggattcagaagactgaacatgctcttaaagttgcagaggaggagcttatgagggtgcagttagaaacaacaacacaattaaatcagctgaaagaggttcatggagcttggttgccaccttggttagtgacacacacagctcgtgctaaggaaatgatgttaagtcactggaatgaacatgggaaacctgctgttaacagtttattgcagaaggcatcagagaaatcagttcaggcaaagaaatgggccgagccacatgtagaagctgccaagacgaaatggatacctgttatcaaggaaaaatgggttaccatgaagacaaacgcagagccttatgtgcaaaaggtctcagcaaaatctatagagctctatcaagcatctaaggatgttgtcttacctcatgttgtgaaagcacataagattgctgatccctacttccaggaagccaagaaagtatccaaaccttacattgatcaagttgctaaggccactaagccacatgtcgagaaaattagaatttatttgaagccttatacaaaaagagcagtccatatatatggaaattttcttgagaaggctacagcttatcatcaacaggctcaagcaactgtcttggactacctgcaccaacatgaattgacaaaagaatttgcgactgaagagttggcctggtacctggcttctgctttgctgattatgcccatttatgttttttacaatgtcctggttgaaacattctgctccaagaagaagaagaaagccacacggaatgttaatgctaaccatggccatcggaaacacaaacgccggcatgctgacaaatag More
Protein seq		MRIARLLLLLALVAGAAVAQDAGLGDVAAEETTAARAKEEAALAAELSQLRAKISALGMLGCSGSISLNGFNSEQKPCGHYLHLLIWPLQKTSDEQKRRIQKTEHALKVAEEELMRVQLETTTQLNQLKEVHGAWLPPWLVTHTARAKEMMLSHWNEHGKPAVNSLLQKASEKSVQAKKWAEPHVEAAKTKWIPVIKEKWVTMKTNAEPYVQKVSAKSIELYQASKDVVLPHVVKAHKIADPYFQEAKKVSKPYIDQVAKATKPHVEKIRIYLKPYTKRAVHIYGNFLEKATAYHQQAQATVLDYLHQHELTKEFATEELAWYLASALLIMPIYVFYNVLVETFCSKKKKKATRNVNANHGHRKHKRRHADK
Function		-

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsNaBo_09g0015430	OsNaBo_09g0015430.01	Chr09	19680592	19685889	+	NAM
CDS seq	atgcggatcgcgaggctgctgctgctgctggcgctcgtcgccggggcggcggtggcgcaggacgcggggctcggggacgtggcggcggaggagacgaccgcggcgagggccaaggaggaggcggcgctcgcggccgagctgagccagctcagggcgaagatctccgccttaggaatgctaggttgttctgggagtatctccttaaatggtttcaattctgagcaaaagccttgtggtcattacctgcatttgctgatttggcctctccaaaagacaagtgatgagcaaaagcgtaggattcagaagactgaacatgctcttaaagttgcagaggaggagcttatgagggtgcagttagaaacaacaacacaattaaatcagctgaaagaggttcatggagcttggttgccaccttggttagtgacacacacagctcgtgctaaggaaatgatgttaagtcactggaatgaacatgggaaacctgctgttaacagtttattgcagaaggcatcagagaaatcagttcaggcaaagaaatgggccgagccacatgtagaagctgccaagacgaaatggatacctgttatcaaggaaaaatgggttaccatgaagacaaacgcagagccttatgtgcaaaaggtctcagcaaaatctatagagctctatcaagcatctaaggatgttgtcttacctcatgttgtgaaagcacataagattgctgatccctacttccaggaagccaagaaagtatccaaaccttacattgatcaagttgctaaggccactaagccacatgtcgagaaaattagaatttatttgaagccttatacaaaaagagcagtccatatatatggaaattttcttgagaaggctacagcttatcatcaacaggctcaagcaactgtcttggactacctgcaccaacatgaattgacaaaagaatttgcgactgaagagttggcctggtacctggcttctgctttgctgattatgcccatttatgttttttacaatgtcctggttgaaacattctgctccaagaagaagaagaaagccacacggaatgttaatgctaaccatggccatcggaaacacaaacgccggcatgctgacaaatag More
Protein seq	MRIARLLLLLALVAGAAVAQDAGLGDVAAEETTAARAKEEAALAAELSQLRAKISALGMLGCSGSISLNGFNSEQKPCGHYLHLLIWPLQKTSDEQKRRIQKTEHALKVAEEELMRVQLETTTQLNQLKEVHGAWLPPWLVTHTARAKEMMLSHWNEHGKPAVNSLLQKASEKSVQAKKWAEPHVEAAKTKWIPVIKEKWVTMKTNAEPYVQKVSAKSIELYQASKDVVLPHVVKAHKIADPYFQEAKKVSKPYIDQVAKATKPHVEKIRIYLKPYTKRAVHIYGNFLEKATAYHQQAQATVLDYLHQHELTKEFATEELAWYLASALLIMPIYVFYNVLVETFCSKKKKKATRNVNANHGHRKHKRRHADK More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsNaBo_09g0015430	OsNaBo_09g0015430.03	Chr09	19682376	19687057	+	NAM
CDS seq	atgtctggtctgccacattgtagttggagaagatctcggatggcatacagaacagaattcagcgtcgaggctgtgattgatttctttctgatatgcatgggatgcacggatgtggagcttgctagttgctactacttttgttggttcttcatgcatgccctctccctcttctccacctccgcggtcgttcgccccgacgccgagctcctctcctgtgtcatttcctgctgccgccgcgcatccgccttcctccccgctcgcgccgcgcacgcctacgggataaagaccgcgccgctgctggccttctacgcctcggccagtctggcgctcgtggcgctgtatgcgatgtgtcggaaggtgagctcgccgccgccgagctcgccgtcgccggctgcctcctctccctccgccgctgctgtatgcactgacgatttgttcaccactaggagcgtcggtgtttgctcgccggagaagaagctggtggtgccggagagcgtgtgcgggcggccgaccggccgctgggactgtagttccaccacgcctccggcgacctgtacgtggctgacgcgtacctgggcctcctga More
Protein seq	MSGLPHCSWRRSRMAYRTEFSVEAVIDFFLICMGCTDVELASCYYFCWFFMHALSLFSTSAVVRPDAELLSCVISCCRRASAFLPARAAHAYGIKTAPLLAFYASASLALVALYAMCRKVSSPPPSSPSPAASSPSAAAVCTDDLFTTRSVGVCSPEKKLVVPESVCGRPTGRWDCSSTTPPATCTWLTRTWAS

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsNaBo_09g0015430	OsNaBo_09g0015430.02	Chr09	19680592	19685388	+	NAM
CDS seq	atgcggatcgcgaggctgctgctgctgctggcgctcgtcgccggggcggcggtggcgcaggacgcggggctcggggacgtggcggcggaggagacgaccgcggcgagggccaaggaggaggcggcgctcgcggccgagctgagccagctcagggcgaagatctccgccttaggaatgctaggttgttctgggagtatctccttaaatggtttcaattctgagcaaaagccttgtggtcattacctgcatttgctgatttggcctctccaaaagacaagtgatgagcaaaagcgtaggattcagaagactgaacatgctcttaaagttgcagaggaggagcttatgagggtgcagttagaaacaacaacacaattaaatcagctgaaagaggttcatggagcttggttgccaccttggttagtgacacacacagctcgtgctaaggaaatgatgttaagtcactggaatgaacatgggaaacctgctgttaacagtttattgcagaaggcatcagagaaatcagttcaggcaaagaaatgggccgagccacatgtagaagctgccaagacgaaatggatacctgttatcaaggaaaaatgggttaccatgaagacaaacgcagagccttatgtgcaaaaggtctcagcaaaatctatagagctctatcaagcatctaaggatgttgtcttacctcatgttgtgaaagcacataagattgctgatccctacttccaggaagccaagaaagtatccaaaccttacattgatcaagttgctaaggccactaagccacatgtcgagaaaattagaatttatttgaagccttatacaaaaagagcagtccatatatatggaaattttcttgagaaggctacagcttatcatcaacaggctcaagcaactgtcttggactacctgcaccaacatgaattgacaaaagaatttgcgactgaagagttggcctggtacctggcttctgctttgctgattatgcccatttatgttttttacaatgtcctggttgaaacattctgctccaagaagaagaagaaagccacacggaatgttaatgctaaccatggccatcggaaacacaaacgccggcatgctgacaaatag More
Protein seq	MRIARLLLLLALVAGAAVAQDAGLGDVAAEETTAARAKEEAALAAELSQLRAKISALGMLGCSGSISLNGFNSEQKPCGHYLHLLIWPLQKTSDEQKRRIQKTEHALKVAEEELMRVQLETTTQLNQLKEVHGAWLPPWLVTHTARAKEMMLSHWNEHGKPAVNSLLQKASEKSVQAKKWAEPHVEAAKTKWIPVIKEKWVTMKTNAEPYVQKVSAKSIELYQASKDVVLPHVVKAHKIADPYFQEAKKVSKPYIDQVAKATKPHVEKIRIYLKPYTKRAVHIYGNFLEKATAYHQQAQATVLDYLHQHELTKEFATEELAWYLASALLIMPIYVFYNVLVETFCSKKKKKATRNVNANHGHRKHKRRHADK More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsNaBo_09g0015430	OsNaBo_09g0015430.04	Chr09	19680470	19685897	+	IsoSeq
CDS seq	gagaggaagcgacagcgagcgaggcgaggcgaggcgaaggcgagcgctcccatctcctctccacttttccgcgccgcgtgctccgaggcggggagggaggcaggttcgcgcggatctcgcgatgcggatcgcgaggctgctgctgctgctggcgctcgtcgccggggcggcggtggcgcaggacgcggggctcggggacgtggcggcggaggagacgaccgcggcgagggccaaggaggaggcggcgctcgcggccgagctgagccagctcagggcgaagatctccgccttagagtcgagcataacaaaacagacccaggagttgaagagcaa More
Protein seq	ERKRQRARRGEAKASAPISSPLFRAACSEAGREAGSRGSRDADREAAAAAGARRRGGGGAGRGARGRGGGGDDRGEGQGGGGARGRAEPAQGEDLRLRVEHNKTDPGVEEQ

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.000000	50.967957	3.850415

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_09g0497700	RBH	0.115489	1.615152	4.918938
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os09g32250	RBH	0.076090	1.066690	1.269740
Nipponbare \| IRGSP 1.0 \| RAP-db	Os09g0497700	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_09g0015330	RBH	0.212316	13.783219	6.099501
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_09g0015340	RBH	0.000000	8.253307	2.673194
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_09g0015560	RBH	0.210679	15.233663	7.257106
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_09g0015370	RBH	0.000000	1.629759	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_09g0015500	RBH	2.672503	72.967598	19.037046
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_09G0322800	RBH	6.9713755	9.7568605	8.7703835
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_09g0015330	RBH	0.000000	3.159835	1.302374
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_09G0312200	RBH	4.093805	2.667803	18.0188805
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_09g0015310	RBH	0.0	0.499656	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_09g0015180	RBH	0.000000	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_09g0015230	RBH	0.000000	79.491982	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_09g0015080	RBH	0.145123	0.0	0.755641
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_09g0015200	RBH	0.000000	20.350735	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_09G015610	RBH	0.035145	18.355352	4.822952
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_08g0022050	RBH	1.727384	25.041504	20.322615

Custom TreePlot

Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.