Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_09g0015390 | OGI:09056290 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr09:19656213-19663304 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gaccaagcaagctggatgcggcgataactacacatcaccaagcaggggtacaagactcaagactacgggatatgtactgtacggcaacgcaccaccacactcagactctcttctgtgagacgcagcatccacagccacagcccacacagatgattattaccattcctatagtatgacactatcatttcctagcttaaatacacggacaaaccgcttggaacgactatatctgtatgatgatgatctatggtgacaggttgacagTttttttttttttttggttgctttgttagccacttttgcgactgataggccttctacgctgaacttgacagggttggcagaaaagaatcggctttcctgtggcgaattcagcagcccttggttacagtttttttggattcggactgcacagctcctgaaaaatggcatatatgggagcagtaaattttggggccaattgaagtagaggatcaggaggagaaatttagcagggctggaggagtggcacgcggacgactcaccgtcaccgcagaggcgctcgactaggctgacgatgtgcttggcataggtgtatttcttcaataatggcaaatggattttcacacgactgagaaggatctccttatgttgttcattgcatgttgtaagcatcttctgtaccacataattagcatactggtccttcattatcacctgtatagcagtgcaggtaattcgtaaatcgcttacttgagtaaagatttagactaataacacaaataacgaaacaaaaatagctggaaacaccgttatttgtattgcaccaagtagccttagaaacagtagccgcgccagaattttatgaggattacttctgttatccAaaaaaaatgacgggcttctgttatatgtttcaatttaagtaaaactcctactcaattatttggatcatgaaggtacctaccatatcttttaattgagtttaacattagtcaaattttgaacaaacaagagcttttagctatttggctcaaaagagcatggaatggcaaaggaaaaaaaacaaaaggtgagttacagtaataatgtataccagcaaatagttattgccctcagtttgcttcagaatctccttgaccaaaagttcccgctctgcactgCccccatgttcaaaacacctctctatgacattagatgcAaatttgttttggctcatgggtactacctgcccagccaatttagtgatgatttggcccctttcatgttcattccctttctccaaaacatgctgcAaaatacacatggttataataaaggcaaagatgctgcaggttgccaaattcaacatcagctacttaagttacacttgctctaactcaaaatagctatccgtattacagcaacaagatgctgatggtttatattaatgaaaatttagtcaaatcagccactaagttttggagaataagaagaaaatcacctgcacaacatagttcccatactgatcttgtgcgaggatgcaagcagactgcaagatttcatcaattatgcaaaggcattcagaattattgctgcaacgctcgaggattctctgccaagcagaatgtgaatatgatcaacaccacaagaaaatgacaagaaaTtaacaaaaatacaacatcgttaccaattcacctgaataacacgacatccatatgtatgcattgacagtttggcaacctggcactgaaaagatgacaccagaaaaccaatatgttccaatggaatacattcaatgcacttttgtataacatgattcccattttggtcatgaacacatcgcagcacatgtccatcgagttcaccaacaagaacaattttctgttcaagatcaattacttcaagggcctgcaattgtagcagtgaagtaggcagtgaaattggcatttgagttcaaatagcgataacgtccagaaaagacagtgtagcagtgtcaacaaacaattcacaagactgtctaaatagcataattgctaataaaaacttacgacgaatgatgaaaatgcgaacacacataacctgacattgactacttgtcttgtctggtgtgtgttcctaatctttttagttgtggttcagtttaattacattaatgtgcaaccacttagtctgtgtgtggtagtaagagagcatttctatgtatccattatatatgagaataacacaaaactcatctgaaaatgagttctccaggaatatagcaagtaaaatgtgtgaataacgggatataatgggattgcaacttataagtcacattatttttcatttccaacacatgctaatccatgaatagctggctacagtgggattgcaacttattaaaagaatgtatgctgataaccatgcataatatgagaaatgatgtccaacaggctaaccactttaaaacttaccaactgatgttcagaataaacaattctatggatagaataacagtctgaagaaaatttactcagataatactttgccaactgatattgagaataaataagtctatggatagcataacagtctgaagaaaaTttgctcagaccgcctcagacaatacatgctatagtgtgccactgaaaaggttttcatgatatggtatccaaaacattaagcagaaataaagttatacttcccataaagaagtcaagactaccttctgaattactctgcatccatacatctgaaggctcaaagaaaacacatgaccggcaagcttattagctatttctctcttttgctgtgggctccccttttcgaagaactgcatgtactacatgttattttcatttcatacaaatataaattatttttcataattgctgctatgatactgtaatatcttaaaAGggggtacaattgttcaagttcaataggtgtactattcataaaaaaattaccataaaatgaatcatataagaaaaggaaatactataccttctgaataacataatttccgaatacatcagtcatcaattccaaagcatgaggaaggacctcggcaaaaagtaaatccttttcttcaatggtgcaattctccagtttctgctgaatgaaccggctaccaTtttggtccgagctgaggacaagaacataataacaattaatatctcaagcTtttcattgggttatgtgcatctagatagtgaatgaaacaaccaaaatcaaaactaacctgtatttcactatctgtcctttgatgtcagccagctcaaccctatgagttctgctggatattagttcttcaacagaaaagtgtgccttgggatcatcaaacttctccctccctttctgaccttgtatctcggaactaacaggcatattttttcgagggggttggaatcccttgacatcgttccttttgtcacgaggagatgttccagaagcaggtttcccatgtaatgttggacctgctggataaggcatcggtacgccaaagtaaggtgaggcagtctcataattcccaatggcctttccacctttgatgggagtagaggcattagcagctacagtagtaaccggtatctgaaacttctgctctgatgggtcaatgattggtgaaccaaaaacgccagcaggattccctacaaaattattacttgaaaccattgtatcatatggatttccaacaccatacggatggatagggggctgttgaaaataatgcgtaaggctctgatcaggaacaggggatggcataggtaCcccaagatgctcatacatcttatatgggtgaaataagtcagttgctgcagcaagatttactgctgaaggaaaaccaggaagttgaggagtgaagttagttataacaggtgggacaaatggaccaggcaaaccatagccgccgattccgaatggaggaacccaaacactaggcgactgcaaattaggataacatggtatcccaaaagaatttggtgtacAaaaaggtgttgccatcccgatctgggacatcagttgaacatcaccagggaacttcatatgaccaaaaccggaattgtccacaaatggaacttgaggaagattaattcctggaggaatcattggcacatgatcgccatggactacatttgataggccattccacactggggcatttttctgccactgttgcatgacatatgaactacttaggatatccggactaatattcaaattcttcagactgaagtctgaactatcaagcatggtaccaactggttcaccaggtttaacggccatgcttggatttctttgctgacaagcttcagtaatagtactgtagtcagaacaggatgaggtgggaggagatgaagctggcagactgtcgctagtaagttttgtactgactggagtcctaataggtctaggggaacgttgatgagcatctggtggaaatccattcaagtctgatgactggacaacataaagtgaggaattcttcgatgaattaatgccagaataaatcgaccctccatcaccagagtttgcatttaaaagatcggaagaattatcatacaaaccattgctccgatgaaagttttcctaaacaaaaagaaatcattatcaataagtatctgcagactgcagcaacaaactctgtagcaaaacagaacatgattataagatattagggagttcatctgcatgcatgagagttggtaaataacaatgtttatggaggagtacaatcaatacttcttttcttgtcgtacttgtattaaggaattgcaaggtttagtgcgattcccatcacatttccttgaaacaaaaacatgttttgattttatttagcagatactacataataaagatcaattagtttaaatcagaatttccagttactatttcaaataagtgagTttttggaaaacgtcttagacactgaatattggaaatgtttgtttgtatatcacagggggcattaatcatatgttatactgtattatttcaccttactaagtcttagctgactaccattcttgtggtctgtgaagccgactgctactgtatagccgtgcataaagatttcttgactttaatatttgaggatacaaaaatggagttatgtcacggatgaaaacattagccttctccggctgccaTttttttggctgcggctgcagctgctactagtagccacagctgtgcaccacagccgcagaaaccaggtgcagctgctgcaaaacccacaaccgaacagcgccacgaagtttgtttgagtgcatgtggaaaaaacaatcagagctagttcttgaattaatacgggaattaccttaattgaatctacaagatttggactgtggccccctaagttagatgtgctttgggcagaatcacattgagcatcgtctgctgaacttgaatccaaacttggtgacttttcgtcctcaggttcttccttgtgtgttggcagagtaggatgaccaagaagtaaggacctgctgctgctgtcatcaagggagaacggctttcgttcttcagacttgccaaactggttccttgaaacgagtggtggaggaaaccttgggttcaaattcaccttggacatatagtatttgacgcatgccgaatcataatatatattCtccttagactctgaattgttagcttcagtgcccaagtttggcagtatggccccaaggttgccactcggttgacctgtgaggtgaccaagtgcaactaaagaaccttccatggtaggaggagcgcttccactgcgtttcaggacagaacccctccacttcccaaaaatgccgccactatttggcatgaaggccaactccgctaactcatcttctgaaaggctagctggaatagaatcataggaacccgtgtccttgcttggtggccacttccctgctccagttcctccactcaacggccgagcactctctgtagccattttgctggacaacaaaaggtgatcgtttttagtgataatttctcaactgaattctgtaagttcagttcaattttagaacctatacgagtacagactaactacacatgtaatgctacaaagcaagcaaatatgcaagctccattacccaaaaagaaaaaaaactcaagaactttaaccatcgaaatcatcatagcaaaatgccaaataaatgcgaTtttttagtttttacccatggtttttgtgatccagcacagcagataaaatccaccgcctagagaaacctgccccatgaggccatggaggacaccacgtgaagcacaccaaaggcggggacttgctggtgagatcacgcacacattcgcccatcgaaaacagaaattacatcttccaaaaaagaaaagtttactgccccaaatacttattactgaacagaaacaagtctccaactagcccaaaaatcacgaaaTtggttaaaaagaaaacaccttgcatacaatctcatgcctaaaccaagctagagggtgcagaccgcagagcaacatcaaacgaagcccgaaaaaggataaatttaaaacataccgaagtgaggaactcgccacctgatcaagcattgcacagaatcacacacacacacacacacacacacacacacacacAcacacacacaacacacacacacacacatccataaccacaaaaccacccgtgtgctcgcaacacataccactccacgaacgctcaaaccgcagcgagtAaaaaaaataaattaaattaaattaaacttaaacatcatcttctcctgtacagcaaaagcaaccccctcaagaaaaaaaaactcaaagcctcaataAACacacacacacacacacacacacacacataaacagagcacaaacggagaagcactgttcacacataattgagttaggggtaaccaaaggccctcaccttcgctgacccttcccgcgagcaacgacaggaaccctaggacaaccaacctttgccgccggcgtcggcgccaccccgcctcctctctcctctccccccttcggccgcgcgcgtgccccgctccaaccgcctcacgccgccaatgcttctcctctctctttctcgctcgctttcccttttatctccgagtcgagcttttcgcggccgcttcgctgccttttgtgttttttctcctctctctgctttgagtc
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| CDS seq | atggctacagagagtgctcggccgttgagtggaggaactggagcagggaagtggccaccaagcaaggacacgggttcctatgattctattccagctagcctttcagaagatgagttagcggagttggccttcatgccaaatagtggcggcatttttgggaagtggaggggttctgtcctgaaacgcagtggaagcgctcctcctaccatggaaggttctttagttgcacttggtcacctcacaggtcaaccgagtggcaaccttggggccatactgccaaacttgggcactgaagctaacaattcagagtctaaggaGaatatatattatgattcggcatgcgtcaaatactatatgtccaaggtgaatttgaacccaaggtttcctccaccactcgtttcaaggaaccagtttggcaagtctgaagaacgaaagccgttctcccttgatgacagcagcagcaggtccttacttcttggtcatcctactctgccaacacacaaggaagaacctgaggacgaaaagtcaccaagtttggattcaagttcagcagacgatgctcaatgtgattctgcccaaagcacatctaacttagggggccacagtccaaatcttgtagattcaattaaggaaaactttcatcggagcaatggtttgtatgataattcttccgatcttttaaatgcaaactctggtgatggagggtcgatttattctggcattaattcatcgaagaattcctcactttatgttgtccagtcatcagacttgaatggatttccaccagatgctcatcaacgttcccctagacctattaggactccagtcagtacaaaacttactagcgacagtctgccagcttcatctcctcccacctcatcctgttctgactacagtactattactgaagcttgtcagcaaagaaatccaagcatggccgttaaacctggtgaaccagttggtaccatgcttgatagttcagacttcagtctgaagaatttgaatattagtccggatatcctaagtagttcatatgtcatgcaacagtggcagaaaaatgccccagtgtggaatggcctatcaaatgtagtccatggcgatcatgtgccaatgattcctccaggaattaatcttcctcaagttccatttgtggacaattccggttttggtcatatgaagttccctggtgatgttcaactgatgtcccagatcgggatggcaacaccttttTgtacaccaaattcttttgggataccatgttatcctaatttgcagtcgcctagtgtttgggttcctccattcggaatcggcggctatggtttgcctggtccatttgtcccacctgttataactaacttcactcctcaacttcctggttttccttcagcagtaaatcttgctgcagcaactgacttatttcacccatataagatgtatgagcatcttgggGtacctatgccatcccctgttcctgatcagagccttacgcattattttcaacagccccctatccatccgtatggtgttggaaatccatatgatacaatggtttcaagtaataattttgtagggaatcctgctggcgtttttggttcaccaatcattgacccatcagagcagaagtttcagataccggttactactgtagctgctaatgcctctactcccatcaaaggtggaaaggccattgggaattatgagactgcctcaccttactttggcgtaccgatgccttatccagcaggtccaacattacatgggaaacctgcttctggaacatctcctcgtgacaaaaggaacgatgtcaagggattccaaccccctcgaaaaaatatgcctgttagttccgagatacaaggtcagaaagggagggagaagtttgatgatcccaaggcacacttttctgttgaagaactaatatccagcagaactcatagggttgagctggctgacatcaaaggacagatagtgaaatacagctcggaccaaaAtggtagccggttcattcagcagaaactggagaattgcaccattgaagaaaaggatttactttttgccgaggtccttcctcatgctttggaattgatgactgatgtattcggaaattatgttattcagaagttcttcgaaaaggggagcccacagcaaaagagagaaatagctaataagcttgccggtcatgtgttttctttgagccttcagatgtatggatgcagagtaattcagaaggcccttgaagtaattgatcttgaacagaaaattgttcttgttggtgaactcgatggacatgtgctgcgatgtgttcatgaccaaaatgggaatcatgttatacaaaagtgcattgaatgtattccattggaacatattggttttctggtgtcatcttttcagtgccaggttgccaaactgtcaatgcatacatatggatgtcgtgttattcagagaatcctcgagcgttgcagcaataattctgaatgcctttgcataattgatgaaatcttgcagtctgcttgcatcctcgcacaagatcagtatgggaactatgttgtgcagcatgttttggagaaagggaatgaacatgaaaggggccaaatcatcactaaattggctgggcaggtagtacccatgagccaaaacaaattTgcatctaatgtcatagagaggtgttttgaacatggggGcagtgcagagcgggaacttttggtcaaggagattctgaagcaaactgagggcaataactatttgctggtgataatgaaggaccagtatgctaattatgtggtacagaagatgcttacaacatgcaatgaacaacataaggagatccttctcagtcgtgtgaaaatccatttgccattattgaagaaatacacctatgccaagcacatcgtcagcctagtcgagcgcctctgcggtgacggagctgtgcagtccgaatccaaaaaaactgtaaccaagggctgctga
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| Protein seq | MATESARPLSGGTGAGKWPPSKDTGSYDSIPASLSEDELAELAFMPNSGGIFGKWRGSVLKRSGSAPPTMEGSLVALGHLTGQPSGNLGAILPNLGTEANNSESKENIYYDSACVKYYMSKVNLNPRFPPPLVSRNQFGKSEERKPFSLDDSSSRSLLLGHPTLPTHKEEPEDEKSPSLDSSSADDAQCDSAQSTSNLGGHSPNLVDSIKENFHRSNGLYDNSSDLLNANSGDGGSIYSGINSSKNSSLYVVQSSDLNGFPPDAHQRSPRPIRTPVSTKLTSDSLPASSPPTSSCSDYSTITEACQQRNPSMAVKPGEPVGTMLDSSDFSLKNLNISPDILSSSYVMQQWQKNAPVWNGLSNVVHGDHVPMIPPGINLPQVPFVDNSGFGHMKFPGDVQLMSQIGMATPFCTPNSFGIPCYPNLQSPSVWVPPFGIGGYGLPGPFVPPVITNFTPQLPGFPSAVNLAAATDLFHPYKMYEHLGVPMPSPVPDQSLTHYFQQPPIHPYGVGNPYDTMVSSNNFVGNPAGVFGSPIIDPSEQKFQIPVTTVAANASTPIKGGKAIGNYETASPYFGVPMPYPAGPTLHGKPASGTSPRDKRNDVKGFQPPRKNMPVSSEIQGQKGREKFDDPKAHFSVEELISSRTHRVELADIKGQIVKYSSDQNGSRFIQQKLENCTIEEKDLLFAEVLPHALELMTDVFGNYVIQKFFEKGSPQQKREIANKLAGHVFSLSLQMYGCRVIQKALEVIDLEQKIVLVGELDGHVLRCVHDQNGNHVIQKCIECIPLEHIGFLVSSFQCQVAKLSMHTYGCRVIQRILERCSNNSECLCIIDEILQSACILAQDQYGNYVVQHVLEKGNEHERGQIITKLAGQVVPMSQNKFASNVIERCFEHGGSAERELLVKEILKQTEGNNYLLVIMKDQYANYVVQKMLTTCNEQHKEILLSRVKIHLPLLKKYTYAKHIVSLVERLCGDGAVQSESKKTVTKGC |
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| Function | Pumilio homolog 5 [UniProtKB/Swiss-Prot:Q9LJX4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_09g0015390 | OsNaBo_09g0015390.02 | Chr09 | 19658771 | 19663304 | - | NAM | ||
| CDS seq | atggctacagagagtgctcggccgttgagtggaggaactggagcagggaagtggccaccaagcaaggacacgggttcctatgattctattccagctagcctttcagaagatgagttagcggagttggccttcatgccaaatagtggcggcatttttgggaagtggaggggttctgtcctgaaacgcagtggaagcgctcctcctaccatggaaggttctttagttgcacttggtcacctcacaggtcaaccgagtggcaaccttggggccatactgccaaacttgggcactgaagctaacaattcagagtctaaggaGaatatatattatgattcggcatgcgtcaaatactatatgtccaaggtgaatttgaacccaaggtttcctccaccactcgtttcaaggaaccagtttggcaagtctgaagaacgaaagccgttctcccttgatgacagcagcagcaggtccttacttcttggtcatcctactctgccaacacacaaggaagaacctgaggacgaaaagtcaccaagtttggattcaagttcagcagacgatgctcaatgtgattctgcccaaagcacatctaacttagggggccacagtccaaatcttgtagattcaattaaggaaaactttcatcggagcaatggtttgtatgataattcttccgatcttttaaatgcaaactctggtgatggagggtcgatttattctggcattaattcatcgaagaattcctcactttatgttgtccagtcatcagacttgaatggatttccaccagatgctcatcaacgttcccctagacctattaggactccagtcagtacaaaacttactagcgacagtctgccagcttcatctcctcccacctcatcctgttctgactacagtactattactgaagcttgtcagcaaagaaatccaagcatggccgttaaacctggtgaaccagttggtaccatgcttgatagttcagacttcagtctgaagaatttgaatattagtccggatatcctaagtagttcatatgtcatgcaacagtggcagaaaaatgccccagtgtggaatggcctatcaaatgtagtccatggcgatcatgtgccaatgattcctccaggaattaatcttcctcaagttccatttgtggacaattccggttttggtcatatgaagttccctggtgatgttcaactgatgtcccagatcgggatggcaacaccttttTgtacaccaaattcttttgggataccatgttatcctaatttgcagtcgcctagtgtttgggttcctccattcggaatcggcggctatggtttgcctggtccatttgtcccacctgttataactaacttcactcctcaacttcctggttttccttcagcagtaaatcttgctgcagcaactgacttatttcacccatataagatgtatgagcatcttgggGtacctatgccatcccctgttcctgatcagagccttacgcattattttcaacagccccctatccatccgtatggtgttggaaatccatatgatacaatggtttcaagtaataattttgtagggaatcctgctggcgtttttggttcaccaatcattgacccatcagagcagaagtttcagataccggttactactgtagctgctaatgcctctactcccatcaaaggtggaaaggccattgggaattatgagactgcctcaccttactttggcgtaccgatgccttatccagcaggtccaacattacatgggaaacctgcttctggaacatctcctcgtgacaaaaggaacgatgtcaagggattccaaccccctcgaaaaaatatgcctgttagttccgagatacaaggtcagaaagggagggagaagtttgatgatcccaaggcacacttttctgttgaagaactaatatccagcagaactcatagggttgagctggctgacatcaaaggacagatagtgaaatacagctcggaccaaaAtggtagccggttcattcagcagaaactggagaattgcaccattgaagaaaaggatttactttttgccgaggtccttcctcatgctttggaattgatgactgatgtattcggaaattatgttattcagaagttcttcgaaaaggggagcccacagcaaaagagagaaatagctaataagcttgccggtcatgtgttttctttgagccttcagatgtatggatgcagagtaattcagaagtggcacactatagcatgtattgtctga
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| Protein seq | MATESARPLSGGTGAGKWPPSKDTGSYDSIPASLSEDELAELAFMPNSGGIFGKWRGSVLKRSGSAPPTMEGSLVALGHLTGQPSGNLGAILPNLGTEANNSESKENIYYDSACVKYYMSKVNLNPRFPPPLVSRNQFGKSEERKPFSLDDSSSRSLLLGHPTLPTHKEEPEDEKSPSLDSSSADDAQCDSAQSTSNLGGHSPNLVDSIKENFHRSNGLYDNSSDLLNANSGDGGSIYSGINSSKNSSLYVVQSSDLNGFPPDAHQRSPRPIRTPVSTKLTSDSLPASSPPTSSCSDYSTITEACQQRNPSMAVKPGEPVGTMLDSSDFSLKNLNISPDILSSSYVMQQWQKNAPVWNGLSNVVHGDHVPMIPPGINLPQVPFVDNSGFGHMKFPGDVQLMSQIGMATPFCTPNSFGIPCYPNLQSPSVWVPPFGIGGYGLPGPFVPPVITNFTPQLPGFPSAVNLAAATDLFHPYKMYEHLGVPMPSPVPDQSLTHYFQQPPIHPYGVGNPYDTMVSSNNFVGNPAGVFGSPIIDPSEQKFQIPVTTVAANASTPIKGGKAIGNYETASPYFGVPMPYPAGPTLHGKPASGTSPRDKRNDVKGFQPPRKNMPVSSEIQGQKGREKFDDPKAHFSVEELISSRTHRVELADIKGQIVKYSSDQNGSRFIQQKLENCTIEEKDLLFAEVLPHALELMTDVFGNYVIQKFFEKGSPQQKREIANKLAGHVFSLSLQMYGCRVIQKWHTIACIV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_09g0015390 | OsNaBo_09g0015390.01 | Chr09 | 19656213 | 19663304 | - | NAM | ||
| CDS seq | atggctacagagagtgctcggccgttgagtggaggaactggagcagggaagtggccaccaagcaaggacacgggttcctatgattctattccagctagcctttcagaagatgagttagcggagttggccttcatgccaaatagtggcggcatttttgggaagtggaggggttctgtcctgaaacgcagtggaagcgctcctcctaccatggaaggttctttagttgcacttggtcacctcacaggtcaaccgagtggcaaccttggggccatactgccaaacttgggcactgaagctaacaattcagagtctaaggaGaatatatattatgattcggcatgcgtcaaatactatatgtccaaggtgaatttgaacccaaggtttcctccaccactcgtttcaaggaaccagtttggcaagtctgaagaacgaaagccgttctcccttgatgacagcagcagcaggtccttacttcttggtcatcctactctgccaacacacaaggaagaacctgaggacgaaaagtcaccaagtttggattcaagttcagcagacgatgctcaatgtgattctgcccaaagcacatctaacttagggggccacagtccaaatcttgtagattcaattaaggaaaactttcatcggagcaatggtttgtatgataattcttccgatcttttaaatgcaaactctggtgatggagggtcgatttattctggcattaattcatcgaagaattcctcactttatgttgtccagtcatcagacttgaatggatttccaccagatgctcatcaacgttcccctagacctattaggactccagtcagtacaaaacttactagcgacagtctgccagcttcatctcctcccacctcatcctgttctgactacagtactattactgaagcttgtcagcaaagaaatccaagcatggccgttaaacctggtgaaccagttggtaccatgcttgatagttcagacttcagtctgaagaatttgaatattagtccggatatcctaagtagttcatatgtcatgcaacagtggcagaaaaatgccccagtgtggaatggcctatcaaatgtagtccatggcgatcatgtgccaatgattcctccaggaattaatcttcctcaagttccatttgtggacaattccggttttggtcatatgaagttccctggtgatgttcaactgatgtcccagatcgggatggcaacaccttttTgtacaccaaattcttttgggataccatgttatcctaatttgcagtcgcctagtgtttgggttcctccattcggaatcggcggctatggtttgcctggtccatttgtcccacctgttataactaacttcactcctcaacttcctggttttccttcagcagtaaatcttgctgcagcaactgacttatttcacccatataagatgtatgagcatcttgggGtacctatgccatcccctgttcctgatcagagccttacgcattattttcaacagccccctatccatccgtatggtgttggaaatccatatgatacaatggtttcaagtaataattttgtagggaatcctgctggcgtttttggttcaccaatcattgacccatcagagcagaagtttcagataccggttactactgtagctgctaatgcctctactcccatcaaaggtggaaaggccattgggaattatgagactgcctcaccttactttggcgtaccgatgccttatccagcaggtccaacattacatgggaaacctgcttctggaacatctcctcgtgacaaaaggaacgatgtcaagggattccaaccccctcgaaaaaatatgcctgttagttccgagatacaaggtcagaaagggagggagaagtttgatgatcccaaggcacacttttctgttgaagaactaatatccagcagaactcatagggttgagctggctgacatcaaaggacagatagtgaaatacagctcggaccaaaAtggtagccggttcattcagcagaaactggagaattgcaccattgaagaaaaggatttactttttgccgaggtccttcctcatgctttggaattgatgactgatgtattcggaaattatgttattcagaagttcttcgaaaaggggagcccacagcaaaagagagaaatagctaataagcttgccggtcatgtgttttctttgagccttcagatgtatggatgcagagtaattcagaaggcccttgaagtaattgatcttgaacagaaaattgttcttgttggtgaactcgatggacatgtgctgcgatgtgttcatgaccaaaatgggaatcatgttatacaaaagtgcattgaatgtattccattggaacatattggttttctggtgtcatcttttcagtgccaggttgccaaactgtcaatgcatacatatggatgtcgtgttattcagagaatcctcgagcgttgcagcaataattctgaatgcctttgcataattgatgaaatcttgcagtctgcttgcatcctcgcacaagatcagtatgggaactatgttgtgcagcatgttttggagaaagggaatgaacatgaaaggggccaaatcatcactaaattggctgggcaggtagtacccatgagccaaaacaaattTgcatctaatgtcatagagaggtgttttgaacatggggGcagtgcagagcgggaacttttggtcaaggagattctgaagcaaactgagggcaataactatttgctggtgataatgaaggaccagtatgctaattatgtggtacagaagatgcttacaacatgcaatgaacaacataaggagatccttctcagtcgtgtgaaaatccatttgccattattgaagaaatacacctatgccaagcacatcgtcagcctagtcgagcgcctctgcggtgacggagctgtgcagtccgaatccaaaaaaactgtaaccaagggctgctga
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| Protein seq | MATESARPLSGGTGAGKWPPSKDTGSYDSIPASLSEDELAELAFMPNSGGIFGKWRGSVLKRSGSAPPTMEGSLVALGHLTGQPSGNLGAILPNLGTEANNSESKENIYYDSACVKYYMSKVNLNPRFPPPLVSRNQFGKSEERKPFSLDDSSSRSLLLGHPTLPTHKEEPEDEKSPSLDSSSADDAQCDSAQSTSNLGGHSPNLVDSIKENFHRSNGLYDNSSDLLNANSGDGGSIYSGINSSKNSSLYVVQSSDLNGFPPDAHQRSPRPIRTPVSTKLTSDSLPASSPPTSSCSDYSTITEACQQRNPSMAVKPGEPVGTMLDSSDFSLKNLNISPDILSSSYVMQQWQKNAPVWNGLSNVVHGDHVPMIPPGINLPQVPFVDNSGFGHMKFPGDVQLMSQIGMATPFCTPNSFGIPCYPNLQSPSVWVPPFGIGGYGLPGPFVPPVITNFTPQLPGFPSAVNLAAATDLFHPYKMYEHLGVPMPSPVPDQSLTHYFQQPPIHPYGVGNPYDTMVSSNNFVGNPAGVFGSPIIDPSEQKFQIPVTTVAANASTPIKGGKAIGNYETASPYFGVPMPYPAGPTLHGKPASGTSPRDKRNDVKGFQPPRKNMPVSSEIQGQKGREKFDDPKAHFSVEELISSRTHRVELADIKGQIVKYSSDQNGSRFIQQKLENCTIEEKDLLFAEVLPHALELMTDVFGNYVIQKFFEKGSPQQKREIANKLAGHVFSLSLQMYGCRVIQKALEVIDLEQKIVLVGELDGHVLRCVHDQNGNHVIQKCIECIPLEHIGFLVSSFQCQVAKLSMHTYGCRVIQRILERCSNNSECLCIIDEILQSACILAQDQYGNYVVQHVLEKGNEHERGQIITKLAGQVVPMSQNKFASNVIERCFEHGGSAERELLVKEILKQTEGNNYLLVIMKDQYANYVVQKMLTTCNEQHKEILLSRVKIHLPLLKKYTYAKHIVSLVERLCGDGAVQSESKKTVTKGC
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_09g0015390 | OsNaBo_09g0015390.03 | Chr09 | 19656213 | 19658138 | - | NAM | ||
| CDS seq | atgccaatttcactgcctacttcactgctacaattgcaggcccttgaagtaattgatcttgaacagaaaattgttcttgttggtgaactcgatggacatgtgctgcgatgtgttcatgaccaaaatgggaatcatgttatacaaaagtgcattgaatgtattccattggaacatattggttttctggtgtcatcttttcagtgccaggttgccaaactgtcaatgcatacatatggatgtcgtgttattcagagaatcctcgagcgttgcagcaataattctgaatgcctttgcataattgatgaaatcttgcagtctgcttgcatcctcgcacaagatcagtatgggaactatgttgtgcagcatgttttggagaaagggaatgaacatgaaaggggccaaatcatcactaaattggctgggcaggtagtacccatgagccaaaacaaattTgcatctaatgtcatagagaggtgttttgaacatggggGcagtgcagagcgggaacttttggtcaaggagattctgaagcaaactgagggcaataactatttgctggtgataatgaaggaccagtatgctaattatgtggtacagaagatgcttacaacatgcaatgaacaacataaggagatccttctcagtcgtgtgaaaatccatttgccattattgaagaaatacacctatgccaagcacatcgtcagcctagtcgagcgcctctgcggtgacggagctgtgcagtccgaatccaaaaaaactgtaaccaagggctgctga
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| Protein seq | MPISLPTSLLQLQALEVIDLEQKIVLVGELDGHVLRCVHDQNGNHVIQKCIECIPLEHIGFLVSSFQCQVAKLSMHTYGCRVIQRILERCSNNSECLCIIDEILQSACILAQDQYGNYVVQHVLEKGNEHERGQIITKLAGQVVPMSQNKFASNVIERCFEHGGSAERELLVKEILKQTEGNNYLLVIMKDQYANYVVQKMLTTCNEQHKEILLSRVKIHLPLLKKYTYAKHIVSLVERLCGDGAVQSESKKTVTKGC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 2.545032 | 1.666483 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0497100 | RBH | 0.0 | 0.0 | 4.257183 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g32210 | RBH | 0.0 | 0.0 | 1.095882 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0497100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0015300 | RBH | 0.000000 | 5.776648 | 4.037970 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0015300 | RBH | 0.0 | 0.739641 | 1.168166 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0015520 | RBH | 0.117507 | 0.000000 | 5.159793 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0015330 | RBH | 0.019854 | 0.049211 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0015470 | RBH | 0.0 | 0.000000 | 4.281309 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0322400 | RBH | 0.3758305 | 1.881453 | 0.889452 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0015290 | RBH | 0.067252 | 0.133371 | 0.294676 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0311800 | RBH | 0.5463115 | 3.181235 | 4.1710565 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0015280 | RBH | 0.022911 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0015140 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0015190 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0015050 | RBH | 0.000000 | 0.0 | 0.155724 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0015160 | RBH | 0.032888 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G015580 | RBH | 0.024527 | 0.0 | 1.041263 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0022070 | RBH | 3.910696 | 35.613064 | 18.483355 |
