Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_09g0015040 | OGI:09055730 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr09:19401994-19405390 | ||||||||
| Gene Symbol | SPL17, OsSPL17 | ||||||||||
| DNA seq | atgaatccgagattaaaataggtcaagtaaaacacatcaattctcccagtttatggagttctacaggtagtggatctcttcgggtgttttgaattcatggacacatcaggctcaacgagaggaaattactggcctaatcagttacgaattccctctccatcctgaaaacctaaatggcaatgttaaggagcacaaaactaggctgcccaatgttccatgtctcttggcatgaaggcgcagtgacggtggggaagaagatgatcaatggtctctacagagaccagttcatggcattggtggagtggctgaaggcgccgctgccggagccatgctcggcttccggccggttggacggggcacctccctgcagtgcgagctcgagctcgccggagaaatggccgtggtggacagagcccggagggacctcgttcagcacaaccccgtgcggtggcggcaggtgcacgttcctggcgccgtcatggccccggctggagctgttccagccggggctcgccgccatgtagttgcttgccatgaccgagggcgacaccgggttgttgccgcctccgaaggcgctggccgttgacgacattggcggggaccggttgtggctgctggtgctttgggtagtatcccatggctgagttgacagaagagagagagcacagctggagtcggtggcgactcccgcgagacatccacctgaggtgagctcaaaggctgggtggtggagcattggtgccccagccgctgagccaccatggctgctgaacgcatggtgatcactgtatcccgcaactgcgctgcggtgaggatggagttcatggcccccttgccactggattgaaccggacatgcgatcgctgggctgaatagcaggccacgcatccctcacactgcttggaacccttgggtatgagaaatctaccacaaagcttctggacctgcctggctcttctgaaacaaaagttgcaggggcaacaagtcaatacactcatctgaagttcagagtaacaggacaaacatgagccacattttaccatgaaaggatgcagcaagccggccatagcgagaagaaagaggtccaggtgtcggcttcctccggcgttcattgtgacctgcaaggcgtctgcggcagctttttttttcttgatcaaattcaggtaattggtggaacctgtgatttgaagtggccaaaatattagtgaattaccacaagcgtagtgacactgcaggatataattgaatacaaggagttttcctaatgaagaatgtcatgctataaaaaatactctacactgacaatgaaaagcaataatcaatttaactcaataaaaaaaaagcacgctgaagagcatttttggtggggctattgcttattgtagtgaccttactttagaaaattgcaagcacatgaaaagtaggagtgccaactctgtaatcaagaatcagctacccctgctgcttatcttaatacggagcgtgcatcagataaataaatcaaaccacatgccatgtgaaaagctgcgtcgatgcaagcataacaacttttttttaatcctagactaatgtgtatttgttctaagtagcaacactaaccaaagacacgcctttcatgattagatacacatacaccacgaccgggaaaataaaaaggttacctaaccatgtggacagagcacctgcaatcattcccatagtactttagcacaaacaaaggctttagttagtacatcaaatagtcaagagatgttttatctacggcagagcagatttataaataacacaacagtcagaaccttctattttccggtaatgcatatgtccacaactccacaagccaccaactatgaaatagtatgcattttttccaaacaaattgttggatgcaatatagcagatgatgttatttcattttgatattttagattatgtagcataagcataagtgtttgtgttctagtatctactatacaaaatgaaaacatataggacaaaattagagtaagtatatgggatttctgatgaaccaaatgagaattattggttagcatgattgaccaacttcgttattgctgggcatgttcaaaggtagaacccatatagtcttttaaataatacatgtttattcagagactatgtccttacaactgttgagatcgacaacaaagactttatttaaacaatgcattcataaaaacaaaattattactattatttccttgttaaaaccctcatgcagaaaagtttccattctatagaggttaagagtcgttgctaagcggttgtttaatcgaagctaccatgtttgcatctccttgcttctctctcatccatgtcagcaaacattcctaattagcaaggttttgtagttactatttcatccgatttgttttccacctcaatttctctgctgccctacttccattttagggcattaaatagtgcatagtagtacagtgtagtaccttactactaccccatatatacttcatatcctaccacattccacatactactagaatagaaaaaaaggagatctagacttactatatgtgtgctcctcagacaagatattctggatggacacttttatgtcccttactattctagtcaggttccacatgtcctaaatttcacattgatcgctactactatcaaacccagcagcagtacactacacacagggcatgaaaatctctcaatctggccagggacaaaacggcaaaatttaatttgcctgaaatccaacgttgctgctacgtttttgcaagttgcagaggttgtttCttttttcttgtcctaaaatcagagcttgctgaggtagccaaatctagtggggagtttttttgaattttggcaggaaccgtttgaaagttgggcgaatcacacggtggattggtgagtgtctgtcacactcacgcgctcacaggtggaacagtagagcagcagaggaagcaggggcaatggctggacgacggcgacgaggaggaggaagaagaagaagattttggttttggtttttggttttttacctgctgcactgttggcagaagcgctgctcgaggccggcgacgacgacgatgggctccttggcgtgcatgtagcacaccttgtggcggcagtagtacggcttgacgccgctcagatccacgccgcaaccctccacctggcacctcggcggcggcggcggcgggggcgccgccgccgccgccgccacgcccttccccttcttgccgcctccgcccgacgacgtcgacgacgactccaccgccgccgccgacgccgacgccgccgcgtcctgcgcgaagtagatcttcttgccgaacttgagcccgtggacatcgtcaccaccacctccacctccgccgccgccgccgctgccgccggtcgccat
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| CDS seq | atggcgaccggcggcagcggcggcggcggcggaggtggaggtggtggtgacgatgtccacgggctcaagttcggcaagaagatctacttcgcgcaggacgcggcggcgtcggcgtcggcggcggcggtggagtcgtcgtcgacgtcgtcgggcggaggcggcaagaaggggaagggcgtggcggcggcggcggcggcgcccccgccgccgccgccgccgaggtgccaggtggagggttgcggcgtggatctgagcggcgtcaagccgtactactgccgccacaaggtgtgctacatgcacgccaaggagcccatcgtcgtcgtcgccggcctcgagcagcgcttctgccaacagtgcagcaggtgctctgtccacatggttaggttccaccaattacctgaatttgatcaagaaaaaaaaagctgccgcagacgccttgcaggtcacaatgaacgccggaggaagccgacacctggacctctttcttctcgctatggccggcttgctgcatcctttcatgaagagccaggcaggtccagaagctttgtggtagatttctcatacccaagggttccaagcagtgtgagggatgcgtggcctgctattcagcccagcgatcgcatgtccggttcaatccagtggcaagggggccatgaactccatcctcaccgcagcgcagttgcgggatacagtgatcaccatgcgttcagcagccatggtggctcagcggctggggcaccaatgctccaccacccagcctttgagctcacctcaggtggatgtctcgcgggagtcgccaccgactccagctgtgctctctctcttctgtcaactcagccatgggatactacccaaagcaccagcagccacaaccggtccccgccaatgtcgtcaacggccagcgccttcggaggcggcaacaacccggtgtcgccctcggtcatggcaagcaactacatggcggcgagccccggctggaacagctccagccggggccatgacggcgccaggaacgtgcacctgccgccaccgcacggggttgtgctgaacgaggtccctccgggctctgtccaccacggccatttctccggcgagctcgagctcgcactgcagggaggtgccccgtccaaccggccggaagccgagcatggctccggcagcggcgccttcagccactccaccaatgccatgaactggtctctgtag
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| Protein seq | MATGGSGGGGGGGGGGDDVHGLKFGKKIYFAQDAAASASAAAVESSSTSSGGGGKKGKGVAAAAAAPPPPPPPRCQVEGCGVDLSGVKPYYCRHKVCYMHAKEPIVVVAGLEQRFCQQCSRCSVHMVRFHQLPEFDQEKKSCRRRLAGHNERRRKPTPGPLSSRYGRLAASFHEEPGRSRSFVVDFSYPRVPSSVRDAWPAIQPSDRMSGSIQWQGGHELHPHRSAVAGYSDHHAFSSHGGSAAGAPMLHHPAFELTSGGCLAGVATDSSCALSLLSTQPWDTTQSTSSHNRSPPMSSTASAFGGGNNPVSPSVMASNYMAASPGWNSSSRGHDGARNVHLPPPHGVVLNEVPPGSVHHGHFSGELELALQGGAPSNRPEAEHGSGSGAFSHSTNAMNWSL |
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| Function | Squamosa promoter-binding-like protein 17 [UniProtKB/Swiss-Prot:A3C057] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_09g0015040 | OsNaBo_09g0015040.01 | Chr09 | 19401994 | 19405390 | - | NAM | ||
| CDS seq | atggcgaccggcggcagcggcggcggcggcggaggtggaggtggtggtgacgatgtccacgggctcaagttcggcaagaagatctacttcgcgcaggacgcggcggcgtcggcgtcggcggcggcggtggagtcgtcgtcgacgtcgtcgggcggaggcggcaagaaggggaagggcgtggcggcggcggcggcggcgcccccgccgccgccgccgccgaggtgccaggtggagggttgcggcgtggatctgagcggcgtcaagccgtactactgccgccacaaggtgtgctacatgcacgccaaggagcccatcgtcgtcgtcgccggcctcgagcagcgcttctgccaacagtgcagcaggtgctctgtccacatggttaggttccaccaattacctgaatttgatcaagaaaaaaaaagctgccgcagacgccttgcaggtcacaatgaacgccggaggaagccgacacctggacctctttcttctcgctatggccggcttgctgcatcctttcatgaagagccaggcaggtccagaagctttgtggtagatttctcatacccaagggttccaagcagtgtgagggatgcgtggcctgctattcagcccagcgatcgcatgtccggttcaatccagtggcaagggggccatgaactccatcctcaccgcagcgcagttgcgggatacagtgatcaccatgcgttcagcagccatggtggctcagcggctggggcaccaatgctccaccacccagcctttgagctcacctcaggtggatgtctcgcgggagtcgccaccgactccagctgtgctctctctcttctgtcaactcagccatgggatactacccaaagcaccagcagccacaaccggtccccgccaatgtcgtcaacggccagcgccttcggaggcggcaacaacccggtgtcgccctcggtcatggcaagcaactacatggcggcgagccccggctggaacagctccagccggggccatgacggcgccaggaacgtgcacctgccgccaccgcacggggttgtgctgaacgaggtccctccgggctctgtccaccacggccatttctccggcgagctcgagctcgcactgcagggaggtgccccgtccaaccggccggaagccgagcatggctccggcagcggcgccttcagccactccaccaatgccatgaactggtctctgtag
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| Protein seq | MATGGSGGGGGGGGGGDDVHGLKFGKKIYFAQDAAASASAAAVESSSTSSGGGGKKGKGVAAAAAAPPPPPPPRCQVEGCGVDLSGVKPYYCRHKVCYMHAKEPIVVVAGLEQRFCQQCSRCSVHMVRFHQLPEFDQEKKSCRRRLAGHNERRRKPTPGPLSSRYGRLAASFHEEPGRSRSFVVDFSYPRVPSSVRDAWPAIQPSDRMSGSIQWQGGHELHPHRSAVAGYSDHHAFSSHGGSAAGAPMLHHPAFELTSGGCLAGVATDSSCALSLLSTQPWDTTQSTSSHNRSPPMSSTASAFGGGNNPVSPSVMASNYMAASPGWNSSSRGHDGARNVHLPPPHGVVLNEVPPGSVHHGHFSGELELALQGGAPSNRPEAEHGSGSGAFSHSTNAMNWSL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 2.676412 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0491532 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g31438 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0491532 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0014950 | RBH | 0.0 | 1.783916 | 0.431141 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0014930 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0015160 | RBH | 0.0 | 3.029299 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0014990 | RBH | 0.0 | 0.040018 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0015060 | RBH | 0.0 | 2.567308 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0318800 | RBH | 0.876446 | 1.903007 | 0.820235 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0014910 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0307400 | RBH | 0.897552 | 0.427303 | 5.01807 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0014880 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0014730 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0014780 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0014670 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0014750 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G015230 | RBH | 0.0 | 0.730176 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0021360 | RBH | 0.0 | 5.180932 | 1.587851 |
