Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_09g0013970 | OGI:09053040 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr09:18632617-18636022 | ||||||||
| Gene Symbol | OsbHLH085, DLN227, OsDLN227 | ||||||||||
| DNA seq | gtcagggatgctaatatgctatgctctgctggctactactatgctgtaagcttcctctctttacgcctgttatgtgtttgtgtaatagtagtgtaagtagcaagtaagtaaacaaaagcaaaggtaaacagcatgattaaagggctgttaacaaagataaagcagtgagtcactaaaatataagccctcccttaaggctaaacgactaacacaaataaaccatgGTgtttgtattggtgtgttggtgactacgagaggagtagtaaagcggctgcctgcctctgtggttaaccctgtactagcattagccctacacaaactagtgatgaacagctagtaaatagtcctataaatgtatcaagcctttgcctacacactctctagtggtagtctatgatcttctacctctcttctccctcttgctggaacatatagcatcagaatcctcactgggcatctttccttttcttgccatatctggccataggctacaataagagttcttgcttgcttctcctcctcctcctcctatcgcattgttcatacagctctgatcaagctctctaagcatcgatcacttggttcttgctcatcatctttcgcttgctcgtcagctaggaattcgtagtcttgagccgaggttgggtgattcgatggacatgagcgagagcagtgagaaaggaatggagagcaatgcgtcgtctggCcctggcaatggcatcccggtggagtggcagagccaattcagcagcgccttcgcgtgccagccgtcggtggcggcgcagcaccagcagcacgccatgatggactccttcgcggcggcgtccgccggcctgtgggcgtcctccgacgtcgtcagcgccatgtcatcagccgcgccgccgcggggcgcggggttcttggcgccggtgcctgggttcctccagcaggggctcggccatttcccggtggactccggcttcatcgagcgcgcagcgcggtcgacgtgcttcggcggcgggatgatggccggcggcccatacggcgcagctgaccaggccatgggcgacgctttcggtggcaccgcggagggtctcatggatcatcacagaaacgttggcaacgacaaggccgaggagttcgccggcaacggccacgacgaggtgccgagctcggaggtagccggtggagactgctcctccaaaggttcagactccaagaagaggagaaggcctaacgaggtaacactgttgttcttgcgtacgactaaaaatctttcatttcagaactctgttgagttctttgcttcgatgttcaaagaatgtaaatttgtgtacattgattgataaacaaaggtgatgggaaccgatcaagtccattcttccaacttgccatctgattctgcgaacgagagtgttcacagcaaagacaaaggcgaggagagcagcccggcgacgacgaacggcggcaagtcgaaagggaagggagcaaaggagacctctgagtcacagaaagaagagtacattcatgtccgggctcggcgtggccaggcaaccaacagccacagcttagcagaaagggtacatatttcagtgttctagtatggacagtatgctttgcaattggcatcagtacgttgaaactgagtattttacgtttcgtgtgcagttgagaagggagaagatcagtgagaggatgaaacttcttcaggacctagttcctggctgcagcaaggtgagTttttttctttctgaagaaagaattgtgagtttatctatctgaagaaagaattgaacaaattcaaaatcgttgtgcttctttcaattgaatttaggtcaccggaaaagcggtgatgcttgacgagatcatcaactatgttcagtccctgcaaagacaagttgaggtactgttcctctaaggttctgactatccacatttactgttgaaaattgtcatgtaggattgaatagaatcactacttatttataatttaccagagacgtgtttctagtaactaattatgtctgccatggtaaaccacaaaacggaaaatgctgaccttccttttgtattgcagttcttatcgatgaagcttgcgacagtaaacccaaggcttgacctcaacatagaagggcttctttcaaaagacgtatgccagcaagttgcaacctcactttacttccactacttttccttctaggaagctaacaatgtccatttttttctcctcaactacagcttcttcgcttccctggagttccttcatcctctatcggattctccccagaaatgatgcatcctcaactacaattgtcacaaccaggactgattcatggtggtaccgctggcatggccaaccccgatgtgttcagacgaataatacaagcgcaattaggtgcaaaggatggatctcaggttagaatcttttcaccaaccaattttactatataccaatatttagaagttggcatagcttaagctgtcattgaacatagactactcctatagccatgcttcaacagtcaacagctatccgattacagtcactagattgtattggctgagacctacagtacagattcattcacctagacatattcaatgaactagaggaaacatccatatagcttattttctaaaggctatcaaatttaggctctaccattcttatcatatatatgtatatagcgtcctcatgcacaaactgaactccataatcttcagaaaggcgaaaacgtactactactcaaacccgaaaagaagctgacgaagtttacaattctttccagcagatgccccactcattgaatggatcattcagtgacgtttcccaaatggcgtacccgtccctcggttctcaggacctaagcatcaggccatctcaggatgggtttcaaatgtgaagaagacgaagaagaagaagatgatgatgatgagggggccaattccatgtacgtgcaattgcttctggcatctggtgaacaagggcaggcacacgcacatgactgaagcttgctactactgctggagaagcagcgtttgcagtgctgctagctcatcgcgtaactgaagtctgaagggcttttaattccttccgtggctagctgtatatccatcgaggttttattgtgttcagaactgaaactgaaaggcttttgagcccccacgtacagggacgctggaaacgaaaaatctgcgtccttgatggctggaaattctgtctggggagcgtgcatttacactgcagcacgaggagcagcaggcaggcagctgaatttgctgcagggctggcacaatgcaagatcactcatccggtggctttgttaagttacttccgatgcattgttggttgcgaaaacgattaaacaactcatcataaacgtggcgctgaatggtgttaatattaagatcaaacacatttgactcc
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| CDS seq | atggacatgagcgagagcagtgagaaaggaatggagagcaatgcgtcgtctggCcctggcaatggcatcccggtggagtggcagagccaattcagcagcgccttcgcgtgccagccgtcggtggcggcgcagcaccagcagcacgccatgatggactccttcgcggcggcgtccgccggcctgtgggcgtcctccgacgtcgtcagcgccatgtcatcagccgcgccgccgcggggcgcggggttcttggcgccggtgcctgggttcctccagcaggggctcggccatttcccggtggactccggcttcatcgagcgcgcagcgcggtcgacgtgcttcggcggcgggatgatggccggcggcccatacggcgcagctgaccaggccatgggcgacgctttcggtggcaccgcggagggtctcatggatcatcacagaaacgttggcaacgacaaggccgaggagttcgccggcaacggccacgacgaggtgccgagctcggaggtagccggtggagactgctcctccaaaggttcagactccaagaagaggagaaggcctaacgaggtgatgggaaccgatcaagtccattcttccaacttgccatctgattctgcgaacgagagtgttcacagcaaagacaaaggcgaggagagcagcccggcgacgacgaacggcggcaagtcgaaagggaagggagcaaaggagacctctgagtcacagaaagaagagtacattcatgtccgggctcggcgtggccaggcaaccaacagccacagcttagcagaaaggttgagaagggagaagatcagtgagaggatgaaacttcttcaggacctagttcctggctgcagcaaggtcaccggaaaagcggtgatgcttgacgagatcatcaactatgttcagtccctgcaaagacaagttgagttcttatcgatgaagcttgcgacagtaaacccaaggcttgacctcaacatagaagggcttctttcaaaagaccttcttcgcttccctggagttccttcatcctctatcggattctccccagaaatgatgcatcctcaactacaattgtcacaaccaggactgattcatggtggtaccgctggcatggccaaccccgatgtgttcagacgaataatacaagcgcaattaggtgcaaaggatggatctcagcagatgccccactcattgaatggatcattcagtgacgtttcccaaatggcgtacccgtccctcggttctcaggacctaagcatcaggccatctcaggatgggtttcaaatgtga
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| Protein seq | MDMSESSEKGMESNASSGPGNGIPVEWQSQFSSAFACQPSVAAQHQQHAMMDSFAAASAGLWASSDVVSAMSSAAPPRGAGFLAPVPGFLQQGLGHFPVDSGFIERAARSTCFGGGMMAGGPYGAADQAMGDAFGGTAEGLMDHHRNVGNDKAEEFAGNGHDEVPSSEVAGGDCSSKGSDSKKRRRPNEVMGTDQVHSSNLPSDSANESVHSKDKGEESSPATTNGGKSKGKGAKETSESQKEEYIHVRARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDLNIEGLLSKDLLRFPGVPSSSIGFSPEMMHPQLQLSQPGLIHGGTAGMANPDVFRRIIQAQLGAKDGSQQMPHSLNGSFSDVSQMAYPSLGSQDLSIRPSQDGFQM |
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| Function | Transcription factor bHLH49 [UniProtKB/Swiss-Prot:Q9CAA9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_09g0013970 | OsNaBo_09g0013970.01 | Chr09 | 18632617 | 18636022 | + | NAM | ||
| CDS seq | atggacatgagcgagagcagtgagaaaggaatggagagcaatgcgtcgtctggCcctggcaatggcatcccggtggagtggcagagccaattcagcagcgccttcgcgtgccagccgtcggtggcggcgcagcaccagcagcacgccatgatggactccttcgcggcggcgtccgccggcctgtgggcgtcctccgacgtcgtcagcgccatgtcatcagccgcgccgccgcggggcgcggggttcttggcgccggtgcctgggttcctccagcaggggctcggccatttcccggtggactccggcttcatcgagcgcgcagcgcggtcgacgtgcttcggcggcgggatgatggccggcggcccatacggcgcagctgaccaggccatgggcgacgctttcggtggcaccgcggagggtctcatggatcatcacagaaacgttggcaacgacaaggccgaggagttcgccggcaacggccacgacgaggtgccgagctcggaggtagccggtggagactgctcctccaaaggttcagactccaagaagaggagaaggcctaacgaggtgatgggaaccgatcaagtccattcttccaacttgccatctgattctgcgaacgagagtgttcacagcaaagacaaaggcgaggagagcagcccggcgacgacgaacggcggcaagtcgaaagggaagggagcaaaggagacctctgagtcacagaaagaagagtacattcatgtccgggctcggcgtggccaggcaaccaacagccacagcttagcagaaaggttgagaagggagaagatcagtgagaggatgaaacttcttcaggacctagttcctggctgcagcaaggtcaccggaaaagcggtgatgcttgacgagatcatcaactatgttcagtccctgcaaagacaagttgagttcttatcgatgaagcttgcgacagtaaacccaaggcttgacctcaacatagaagggcttctttcaaaagaccttcttcgcttccctggagttccttcatcctctatcggattctccccagaaatgatgcatcctcaactacaattgtcacaaccaggactgattcatggtggtaccgctggcatggccaaccccgatgtgttcagacgaataatacaagcgcaattaggtgcaaaggatggatctcagatgccccactcattgaatggatcattcagtgacgtttcccaaatggcgtacccgtccctcggttctcaggacctaagcatcaggccatctcaggatgggtttcaaatgtga
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| Protein seq | MDMSESSEKGMESNASSGPGNGIPVEWQSQFSSAFACQPSVAAQHQQHAMMDSFAAASAGLWASSDVVSAMSSAAPPRGAGFLAPVPGFLQQGLGHFPVDSGFIERAARSTCFGGGMMAGGPYGAADQAMGDAFGGTAEGLMDHHRNVGNDKAEEFAGNGHDEVPSSEVAGGDCSSKGSDSKKRRRPNEVMGTDQVHSSNLPSDSANESVHSKDKGEESSPATTNGGKSKGKGAKETSESQKEEYIHVRARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDLNIEGLLSKDLLRFPGVPSSSIGFSPEMMHPQLQLSQPGLIHGGTAGMANPDVFRRIIQAQLGAKDGSQMPHSLNGSFSDVSQMAYPSLGSQDLSIRPSQDGFQM
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_09g0013970 | OsNaBo_09g0013970.03 | Chr09 | 18632952 | 18635920 | + | NAM | ||
| CDS seq | atggacatgagcgagagcagtgagaaaggaatggagagcaatgcgtcgtctggCcctggcaatggcatcccggtggagtggcagagccaattcagcagcgccttcgcgtgccagccgtcggtggcggcgcagcaccagcagcacgccatgatggactccttcgcggcggcgtccgccggcctgtgggcgtcctccgacgtcgtcagcgccatgtcatcagccgcgccgccgcggggcgcggggttcttggcgccggtgcctgggttcctccagcaggggctcggccatttcccggtggactccggcttcatcgagcgcgcagcgcggtcgacgtgcttcggcggcgggatgatggccggcggcccatacggcgcagctgaccaggccatgggcgacgctttcggtggcaccgcggagggtctcatggatcatcacagaaacgttggcaacgacaaggccgaggagttcgccggcaacggccacgacgaggtgccgagctcggaggtagccggtggagactgctcctccaaaggttcagactccaagaagaggagaaggcctaacgaggtgatgggaaccgatcaagtccattcttccaacttgccatctgattctgcgaacgagagtgttcacagcaaagacaaaggcgaggagagcagcccggcgacgacgaacggcggcaagtcgaaagggaagggagcaaaggagacctctgagtcacagaaagaagagtacattcatgtccgggctcggcgtggccaggcaaccaacagccacagcttagcagaaaggttgagaagggagaagatcagtgagaggatgaaacttcttcaggacctagttcctggctgcagcaaggtcaccggaaaagcggtgatgcttgacgagatcatcaactatgttcagtccctgcaaagacaagttgagttcttatcgatgaagcttgcgacagtaaacccaaggcttgacctcaacatagaagggcttctttcaaaagaccttcttcgcttccctggagttccttcatcctctatcggattctccccagaaatgatgcatcctcaactacaattgtcacaaccaggactgattcatggtggtaccgctggcatggccaaccccgatgtgttcagacgaataatacaagcgcaattaggtgcaaaggatggatctcagcagatgccccactcattgaatggatcattcagtgacgtttcccaaatggcgtacccgtccctcggttctcaggacctaagcatcaggccatctcaggatgggtttcaaatgtga
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| Protein seq | MDMSESSEKGMESNASSGPGNGIPVEWQSQFSSAFACQPSVAAQHQQHAMMDSFAAASAGLWASSDVVSAMSSAAPPRGAGFLAPVPGFLQQGLGHFPVDSGFIERAARSTCFGGGMMAGGPYGAADQAMGDAFGGTAEGLMDHHRNVGNDKAEEFAGNGHDEVPSSEVAGGDCSSKGSDSKKRRRPNEVMGTDQVHSSNLPSDSANESVHSKDKGEESSPATTNGGKSKGKGAKETSESQKEEYIHVRARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDLNIEGLLSKDLLRFPGVPSSSIGFSPEMMHPQLQLSQPGLIHGGTAGMANPDVFRRIIQAQLGAKDGSQQMPHSLNGSFSDVSQMAYPSLGSQDLSIRPSQDGFQM
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_09g0013970 | OsNaBo_09g0013970.02 | Chr09 | 18632952 | 18636022 | + | NAM | ||
| CDS seq | atggacatgagcgagagcagtgagaaaggaatggagagcaatgcgtcgtctggCcctggcaatggcatcccggtggagtggcagagccaattcagcagcgccttcgcgtgccagccgtcggtggcggcgcagcaccagcagcacgccatgatggactccttcgcggcggcgtccgccggcctgtgggcgtcctccgacgtcgtcagcgccatgtcatcagccgcgccgccgcggggcgcggggttcttggcgccggtgcctgggttcctccagcaggggctcggccatttcccggtggactccggcttcatcgagcgcgcagcgcggtcgacgtgcttcggcggcgggatgatggccggcggcccatacggcgcagctgaccaggccatgggcgacgctttcggtggcaccgcggagggtctcatggatcatcacagaaacgttggcaacgacaaggccgaggagttcgccggcaacggccacgacgaggtgccgagctcggaggtagccggtggagactgctcctccaaaggttcagactccaagaagaggagaaggcctaacgaggtgatgggaaccgatcaagtccattcttccaacttgccatctgattctgcgaacgagagtgttcacagcaaagacaaaggcgaggagagcagcccggcgacgacgaacggcggcaagtcgaaagggaagggagcaaaggagacctctgagtcacagaaagaagagtacattcatgtccgggctcggcgtggccaggcaaccaacagccacagcttagcagaaaggttgagaagggagaagatcagtgagaggatgaaacttcttcaggacctagttcctggctgcagcaaggtcaccggaaaagcggtgatgcttgacgagatcatcaactatgttcagtccctgcaaagacaagttgagttcttatcgatgaagcttgcgacagtaaacccaaggcttgacctcaacatagaagggcttctttcaaaagaccttcttcgcttccctggagttccttcatcctctatcggattctccccagaaatgatgcatcctcaactacaattgtcacaaccaggactgattcatggtggtaccgctggcatggccaaccccgatgtgttcagacgaataatacaagcgcaattaggtgcaaaggatggatctcagatgccccactcattgaatggatcattcagtgacgtttcccaaatggcgtacccgtccctcggttctcaggacctaagcatcaggccatctcaggatgggtttcaaatgtga
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| Protein seq | MDMSESSEKGMESNASSGPGNGIPVEWQSQFSSAFACQPSVAAQHQQHAMMDSFAAASAGLWASSDVVSAMSSAAPPRGAGFLAPVPGFLQQGLGHFPVDSGFIERAARSTCFGGGMMAGGPYGAADQAMGDAFGGTAEGLMDHHRNVGNDKAEEFAGNGHDEVPSSEVAGGDCSSKGSDSKKRRRPNEVMGTDQVHSSNLPSDSANESVHSKDKGEESSPATTNGGKSKGKGAKETSESQKEEYIHVRARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDLNIEGLLSKDLLRFPGVPSSSIGFSPEMMHPQLQLSQPGLIHGGTAGMANPDVFRRIIQAQLGAKDGSQMPHSLNGSFSDVSQMAYPSLGSQDLSIRPSQDGFQM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr09 | 18635010 | 18635388 | + | OsNaBo_09g0013970.03 | OsNaBo_09g0013970.02,OsNaBo_09g0013970.01,OsNaBo_09g0013970.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.240220 | 5.570294 | 3.647642 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0474100 | RBH | 0.492950 | 0.119403 | 1.283929 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g29830 | RBH | 0.426458 | 0.078097 | 0.355654 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0474100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0013850 | RBH | 0.000000 | 0.000000 | 0.588889 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0013800 | RBH | 0.180077 | 2.502378 | 0.725655 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0014060 | RBH | 0.0 | 3.111273 | 4.339380 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0013890 | RBH | 0.000000 | 0.207521 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0014000 | RBH | 0.491704 | 9.558056 | 6.221280 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0324800 | SBH | 17.576281 | 27.133538 | 3.7348585 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0013900 | RBH | 0.000000 | 0.000000 | 0.752285 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0293300 | RBH | 1.9372205 | 3.010642 | 5.4896185 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0013890 | RBH | 0.038912 | 0.056884 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0013690 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0013780 | RBH | 1.102833 | 13.208485 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0013660 | RBH | 0.0 | 0.0 | 0.702756 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0013720 | RBH | 0.000000 | 3.213838 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G014190 | RBH | 0.093261 | 5.762493 | 0.346766 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0019930 | RBH | 0.000000 | 0.000000 | 0.000000 |
