Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_09g0013460 | OGI:09051930 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr09:18235367-18237207 | ||||||||
| Gene Symbol | ZHD1, OsZHD1, ACL-D, OsACL-D | ||||||||||
| DNA seq | gagaaggaatgcaacagtggcctatcttttttaggagtggcagtactccgtagtagccaacaaactattgctactagcaaacctagacgaatggcccgacccatgggtaaaattatcccagcgcgcaggtcccaaccacaaaaaatataagagcacatacactgaatccatgcagctactctagctagccccaatccccagacacaattcctcacctgcgctgatcgatcacttgaaacatcaggtacattcccaagaagaaccaaatcggcaaatggccaagccatgcataggaattaaacagcacgagcaacagttaaaatgaaaagaagaaagaaccacctactagagccgagaacgaatgctctctcagtctctcttgctacagattaacctaagccaccaattaattaagtccaactctaaataaataaggttcaggtacctaccataccggggtccgggtggctaagccacggccggtcgatcagctcagctagcttgggatggacatggatgcatgcgtcgtcccacaacttggtcatgcatgccgacgatgagatcaaatgcatttgctcccggtcatggcagcttcttgcccagggtgtgcttgttgttgtgcatccacaccttgagcacgtggcgcttgacgccgacctcgtcgcagaactgctgcacggcggcctcgtcgtgcttctggatgcgccacccgacgcgctcggcgaacgccagcatcttgtccttctgctcctgggtgaacttggtgcggaaccgcttcttgccggagccggagccggacgggccggcgccgagggacatgccgctgagcggccccaccgccgacatgggccccaccatcccggacaggtcgtcgccgtcgtcgcggccgctgtgggaggtggacgggagcgcgaggggccgctgcgggtggccgccggctgcggcggcggcggccgcggctgccgcggccatgtggtgctggtggtggtggaggtaaccggcaggggtgcggtagtacggggagaactggtggtgcggcgtggcgccgtaggggacgacggcggccggggagaagggcgagccctcgccggcgagcgactcggactccttCcggtggaagttgcggtggcagttgcacgcggcgcagcggagcgcgtcgatggtgccctcctcgccggccgccatgaactcgccgcagccgtccacggcgtggccgccgatgccaaccgcgtggttcttgaggcactcgcggtacctgccgccaccgcagctggggCccttcacatggctgccaatctcaccaggaggcttgggcgccatcccaccgccggcaaggccatgctgcggcggagtctcgtagctcgagctcaccggcatcggcggcatctcctcgtcgccgtcgtcatggtcatcgaagtccatggtcgccgtcgccggccggccggccggcaagcttgtctagctagctagctacctagctaggaaaacacttagctttactgtcctagctgctttgtctagtctttggtttgtgtgtgttgctgagcatggaaggaggctaagagaagctttagcgaggttaagaccgagatgaagggataagagatgcagcagagtgtggacaccatctggctgccagttttgacgcgccgctagctagcagcggcagccaggcaagccgctgctggctgcagcaagcagcagcgcctaggtgatgatgtaactttgtttctctcgctctatctctctctctctctctctatctacagtaTCtctctctagatagcaaactcgctttctccatttctcctcctctgttcaccgcttccctcaagagtcaa
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| CDS seq | atggacttcgatgaccatgacgacggcgacgaggagatgccgccgatgccggtgagctcgagctacgagactccgccgcagcatggccttgccggcggtgggatggcgcccaagcctcctggtgagattggcagccatgtgaaggGccccagctgcggtggcggcaggtaccgcgagtgcctcaagaaccacgcggttggcatcggcggccacgccgtggacggctgcggcgagttcatggcggccggcgaggagggcaccatcgacgcgctccgctgcgccgcgtgcaactgccaccgcaacttccaccgGaaggagtccgagtcgctcgccggcgagggctcgcccttctccccggccgccgtcgtcccctacggcgccacgccgcaccaccagttctccccgtactaccgcacccctgccggttacctccaccaccaccagcaccacatggccgcggcagccgcggccgccgccgccgcagccggcggccacccgcagcggcccctcgcgctcccgtccacctcccacagcggccgcgacgacggcgacgacctgtccgggatggtggggcccatgtcggcggtggggccgctcagcggcatgtccctcggcgccggcccgtccggctccggctccggcaagaagcggttccgcaccaagttcacccaggagcagaaggacaagatgctggcgttcgccgagcgcgtcgggtggcgcatccagaagcacgacgaggccgccgtgcagcagttctgcgacgaggtcggcgtcaagcgccacgtgctcaaggtgtggatgcacaacaacaagcacaccctgggcaagaagctgccatga
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| Protein seq | MDFDDHDDGDEEMPPMPVSSSYETPPQHGLAGGGMAPKPPGEIGSHVKGPSCGGGRYRECLKNHAVGIGGHAVDGCGEFMAAGEEGTIDALRCAACNCHRNFHRKESESLAGEGSPFSPAAVVPYGATPHHQFSPYYRTPAGYLHHHQHHMAAAAAAAAAAAGGHPQRPLALPSTSHSGRDDGDDLSGMVGPMSAVGPLSGMSLGAGPSGSGSGKKRFRTKFTQEQKDKMLAFAERVGWRIQKHDEAAVQQFCDEVGVKRHVLKVWMHNNKHTLGKKLP |
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| Function | Zinc-finger homeodomain protein 1 [UniProtKB/Swiss-Prot:A2Z259] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_09g0013460 | OsNaBo_09g0013460.01 | Chr09 | 18235367 | 18237207 | - | NAM | ||
| CDS seq | atggacttcgatgaccatgacgacggcgacgaggagatgccgccgatgccggtgagctcgagctacgagactccgccgcagcatggccttgccggcggtgggatggcgcccaagcctcctggtgagattggcagccatgtgaaggGccccagctgcggtggcggcaggtaccgcgagtgcctcaagaaccacgcggttggcatcggcggccacgccgtggacggctgcggcgagttcatggcggccggcgaggagggcaccatcgacgcgctccgctgcgccgcgtgcaactgccaccgcaacttccaccgGaaggagtccgagtcgctcgccggcgagggctcgcccttctccccggccgccgtcgtcccctacggcgccacgccgcaccaccagttctccccgtactaccgcacccctgccggttacctccaccaccaccagcaccacatggccgcggcagccgcggccgccgccgccgcagccggcggccacccgcagcggcccctcgcgctcccgtccacctcccacagcggccgcgacgacggcgacgacctgtccgggatggtggggcccatgtcggcggtggggccgctcagcggcatgtccctcggcgccggcccgtccggctccggctccggcaagaagcggttccgcaccaagttcacccaggagcagaaggacaagatgctggcgttcgccgagcgcgtcgggtggcgcatccagaagcacgacgaggccgccgtgcagcagttctgcgacgaggtcggcgtcaagcgccacgtgctcaaggtgtggatgcacaacaacaagcacaccctgggcaagaagctgccatga
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| Protein seq | MDFDDHDDGDEEMPPMPVSSSYETPPQHGLAGGGMAPKPPGEIGSHVKGPSCGGGRYRECLKNHAVGIGGHAVDGCGEFMAAGEEGTIDALRCAACNCHRNFHRKESESLAGEGSPFSPAAVVPYGATPHHQFSPYYRTPAGYLHHHQHHMAAAAAAAAAAAGGHPQRPLALPSTSHSGRDDGDDLSGMVGPMSAVGPLSGMSLGAGPSGSGSGKKRFRTKFTQEQKDKMLAFAERVGWRIQKHDEAAVQQFCDEVGVKRHVLKVWMHNNKHTLGKKLP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.258146 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0466400 | RBH | 0.0 | 0.214179 | 1.020901 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g29130 | RBH | 0.0 | 0.090634 | 0.165346 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0466400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0013390 | RBH | 0.0 | 0.0 | 0.681943 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0013330 | RBH | 0.276041 | 0.0 | 0.221509 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0013590 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0013400 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0013480 | RBH | 0.449134 | 0.0 | 1.207817 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0296200 | RBH | 2.8584855 | 0.0188195 | 7.0523605 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0013380 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0287000 | RBH | 2.8617945 | 0.0355535 | 15.2276435 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0013360 | RBH | 0.044540 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0013170 | RBH | 0.098065 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0013260 | RBH | 1.262329 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0013140 | RBH | 0.290408 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0013200 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G013690 | RBH | 0.0 | 0.0 | 0.385490 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0019380 | RBH | 0.0 | 0.0 | 0.760790 |
