Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_09g0007870 | OGI:09035550 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr09:12379586-12382341 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aaggggggcatgggcctctatggcgagctgatgtatccgatcgaaagaggtaattaatttccaagaacttttctcttacaaatcggcttaccgcctagcaatgcgttgaattaaaattttcacattttctgagtataataagccgcaaaaagtgtctaatcccaccataatcttgcttgcacaatggaagcttggaaagagcagggggggattcgagcaaaatcaaaggtgccttgcagcttcggtggtggaagaagaaaccagttgttgatgctggtaggtctggtggtttcaagctagcagttacatggcgatgctgaggccggcggccatggatttgttcctgtcggcgacgtccatcgtctccaacgccaacgaatggttcgagttcctcggcacggccttctccgccgcgtcgttgctgctatcccggtggaggcgtcggcggcaaggggacgaggcggagaggaggcagctgcagtggaaagggcaggacgcgaagatgaagcagctccactactgcatgctccagctcccggatctgatccaccatgccgagtggctcagcttcgtcaaggacgacaaggaggtggccaagctcctccccgagctcaaggccagggtgcacgacgcctacgacctcctcgaggagttcaatcaccaccaccatcaccagcagcagctccaactggatctgggtcaggacgccgccgcggagaaggccggggacgatttcttgcagagcatcgccggtggcaacacggtgagggagatcctggatgatctcaactgcctgaggaacacgcttgagggtgtcattgaccgccatgctcgctccgagccgcatcagattggcaagctgctgaggccggccatgacctctttctatgacaaatccaagttccgcagccttgaggatgaggtgaatgagctgctcgagttactcggggtgaagatctgctcggcacggccacacaagcggcgaatcaaaggcgaaaccgcttcggctagcaagaggaccaagcggaacagcggtgtcccttctgcatccaccaggacatcatgcagcaatcaggaaattgcatctgacaatgtaactgtcttagcgatatctggcattggtggtgttgggaaaactactttggctcggcaagtttacaatgatgagagggtcaaggggtattttgatgtcaggatctggatttctgtctcggatgatttcaatgtcaagagattaactaaggagttcatagagttcgctcttgcgaattggatgcagtctgataatctgtgtaacctccagcagagtctcactgaaagcattgtcaagtttaggttcttgcttgttcttgatgatgtgtgggacgatgtatatgctaatcaagacaacagatggcagaatttccttgagccattgaagtctgcccaacaagggagtgcgattctgttgacgacaaggtctcaaagggttgcggatctagtgaatgaaaacaggcacttccgactggaaggtctgccgcctaccattttcgatgaattttttgaggcgtgtgcatttggctcagatcgctgcggtgttaatccagaactgaaccccattgggaaaaggataattccacagctgaagaggtgtcctttagctgctgaaactcttggacgtttactgaagcctatgctggatagagagcactggaatcagattgcaggaagtgagttgtgggagctgaaacaggagaaatatgacattttgccagtccttcgcttgagctatctgtatctaccttcctatctgagaaactgttttttgttttgctccatgtatcctaaaaaccatcagtttgacaaagatactctggtgaacagttggatagcagctgggttagttgagtcctgcaagggtggcaagctagaaagcaatggataccaatattttgaggatctactgcatagatcccttcttcagaaggaatcaaacagcccaacggattccaagtatgttatgcataagctgatccatgatatggcacaactgatttctgagcacgagtgcttcattgtaaaaggcgaaactgatctgacaaaaatccctcaaggcgttcgccatctttcaataattggcagtagtagtctcagtgaaaccaacctaataatggtatgcaagtacaaaacgctgcgctccattgtgtgccatggtgttgagacttacatacttactgctgtagcgaagtactggtttgaagaacttaccaaaatacgaatgctgggtttcctgtcctgtgaggtgaactctctgcctgagaacattgacaacctgaagcttctccggtacctgaatatcagcgattgtactttcgaagagcttcctcaatctttttggcgacttcagaatttacaaattgtagatgctcagaaatgccgtgtccaacaaattcctgatgacttcaatcgattgggtaatttgcagagatttaagttgaggggtagaattatcaaacaacccggcacttatgaactttaacttacaagatatcccgtgagattgatgaattacatctacgagcttattgtacagtgtaagtgatgatccaattgtaccgtaaaagtcctcttcaaaataggtggacatgtataactgcaacatcagtggtcacctgtgaactctgtaatattgttatttgacgaaagtaggatatatggacagttgctccggttgatcttagacatgtgtgacgaaagttattaccatcatccttctt
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| CDS seq | atggcgatgctgaggccggcggccatggatttgttcctgtcggcgacgtccatcgtctccaacgccaacgaatggttcgagttcctcggcacggccttctccgccgcgtcgttgctgctatcccggtggaggcgtcggcggcaaggggacgaggcggagaggaggcagctgcagtggaaagggcaggacgcgaagatgaagcagctccactactgcatgctccagctcccggatctgatccaccatgccgagtggctcagcttcgtcaaggacgacaaggaggtggccaagctcctccccgagctcaaggccagggtgcacgacgcctacgacctcctcgaggagttcaatcaccaccaccatcaccagcagcagctccaactggatctgggtcaggacgccgccgcggagaaggccggggacgatttcttgcagagcatcgccggtggcaacacggtgagggagatcctggatgatctcaactgcctgaggaacacgcttgagggtgtcattgaccgccatgctcgctccgagccgcatcagattggcaagctgctgaggccggccatgacctctttctatgacaaatccaagttccgcagccttgaggatgaggtgaatgagctgctcgagttactcggggtgaagatctgctcggcacggccacacaagcggcgaatcaaaggcgaaaccgcttcggctagcaagaggaccaagcggaacagcggtgtcccttctgcatccaccaggacatcatgcagcaatcaggaaattgcatctgacaatgtaactgtcttagcgatatctggcattggtggtgttgggaaaactactttggctcggcaagtttacaatgatgagagggtcaaggggtattttgatgtcaggatctggatttctgtctcggatgatttcaatgtcaagagattaactaaggagttcatagagttcgctcttgcgaattggatgcagtctgataatctgtgtaacctccagcagagtctcactgaaagcattgtcaagtttaggttcttgcttgttcttgatgatgtgtgggacgatgtatatgctaatcaagacaacagatggcagaatttccttgagccattgaagtctgcccaacaagggagtgcgattctgttgacgacaaggtctcaaagggttgcggatctagtgaatgaaaacaggcacttccgactggaaggtctgccgcctaccattttcgatgaattttttgaggcgtgtgcatttggctcagatcgctgcggtgttaatccagaactgaaccccattgggaaaaggataattccacagctgaagaggtgtcctttagctgctgaaactcttggacgtttactgaagcctatgctggatagagagcactggaatcagattgcaggaagtgagttgtgggagctgaaacaggagaaatatgacattttgccagtccttcgcttgagctatctgtatctaccttcctatctgagaaactgttttttgttttgctccatgtatcctaaaaaccatcagtttgacaaagatactctggtgaacagttggatagcagctgggttagttgagtcctgcaagggtggcaagctagaaagcaatggataccaatattttgaggatctactgcatagatcccttcttcagaaggaatcaaacagcccaacggattccaagtatgttatgcataagctgatccatgatatggcacaactgatttctgagcacgagtgcttcattgtaaaaggcgaaactgatctgacaaaaatccctcaaggcgttcgccatctttcaataattggcagtagtagtctcagtgaaaccaacctaataatggtatgcaagtacaaaacgctgcgctccattgtgtgccatggtgttgagacttacatacttactgctgtagcgaagtactggtttgaagaacttaccaaaatacgaatgctgggtttcctgtcctgtgaggtgaactctctgcctgagaacattgacaacctgaagcttctccggtacctgaatatcagcgattgtactttcgaagagcttcctcaatctttttggcgacttcagaatttacaaattgtagatgctcagaaatgccgtgtccaacaaattcctgatgacttcaatcgattgggtaatttgcagagatttaagttgaggggtagaattatcaaacaacccggcacttatgaactttaa
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| Protein seq | MAMLRPAAMDLFLSATSIVSNANEWFEFLGTAFSAASLLLSRWRRRRQGDEAERRQLQWKGQDAKMKQLHYCMLQLPDLIHHAEWLSFVKDDKEVAKLLPELKARVHDAYDLLEEFNHHHHHQQQLQLDLGQDAAAEKAGDDFLQSIAGGNTVREILDDLNCLRNTLEGVIDRHARSEPHQIGKLLRPAMTSFYDKSKFRSLEDEVNELLELLGVKICSARPHKRRIKGETASASKRTKRNSGVPSASTRTSCSNQEIASDNVTVLAISGIGGVGKTTLARQVYNDERVKGYFDVRIWISVSDDFNVKRLTKEFIEFALANWMQSDNLCNLQQSLTESIVKFRFLLVLDDVWDDVYANQDNRWQNFLEPLKSAQQGSAILLTTRSQRVADLVNENRHFRLEGLPPTIFDEFFEACAFGSDRCGVNPELNPIGKRIIPQLKRCPLAAETLGRLLKPMLDREHWNQIAGSELWELKQEKYDILPVLRLSYLYLPSYLRNCFLFCSMYPKNHQFDKDTLVNSWIAAGLVESCKGGKLESNGYQYFEDLLHRSLLQKESNSPTDSKYVMHKLIHDMAQLISEHECFIVKGETDLTKIPQGVRHLSIIGSSSLSETNLIMVCKYKTLRSIVCHGVETYILTAVAKYWFEELTKIRMLGFLSCEVNSLPENIDNLKLLRYLNISDCTFEELPQSFWRLQNLQIVDAQKCRVQQIPDDFNRLGNLQRFKLRGRIIKQPGTYEL |
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| Function | Putative disease resistance RPP13-like protein 1 [UniProtKB/Swiss-Prot:Q9LRR4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_09g0007870 | OsNaBo_09g0007870.01 | Chr09 | 12379586 | 12382341 | + | NAM | ||
| CDS seq | atggcgatgctgaggccggcggccatggatttgttcctgtcggcgacgtccatcgtctccaacgccaacgaatggttcgagttcctcggcacggccttctccgccgcgtcgttgctgctatcccggtggaggcgtcggcggcaaggggacgaggcggagaggaggcagctgcagtggaaagggcaggacgcgaagatgaagcagctccactactgcatgctccagctcccggatctgatccaccatgccgagtggctcagcttcgtcaaggacgacaaggaggtggccaagctcctccccgagctcaaggccagggtgcacgacgcctacgacctcctcgaggagttcaatcaccaccaccatcaccagcagcagctccaactggatctgggtcaggacgccgccgcggagaaggccggggacgatttcttgcagagcatcgccggtggcaacacggtgagggagatcctggatgatctcaactgcctgaggaacacgcttgagggtgtcattgaccgccatgctcgctccgagccgcatcagattggcaagctgctgaggccggccatgacctctttctatgacaaatccaagttccgcagccttgaggatgaggtgaatgagctgctcgagttactcggggtgaagatctgctcggcacggccacacaagcggcgaatcaaaggcgaaaccgcttcggctagcaagaggaccaagcggaacagcggtgtcccttctgcatccaccaggacatcatgcagcaatcaggaaattgcatctgacaatgtaactgtcttagcgatatctggcattggtggtgttgggaaaactactttggctcggcaagtttacaatgatgagagggtcaaggggtattttgatgtcaggatctggatttctgtctcggatgatttcaatgtcaagagattaactaaggagttcatagagttcgctcttgcgaattggatgcagtctgataatctgtgtaacctccagcagagtctcactgaaagcattgtcaagtttaggttcttgcttgttcttgatgatgtgtgggacgatgtatatgctaatcaagacaacagatggcagaatttccttgagccattgaagtctgcccaacaagggagtgcgattctgttgacgacaaggtctcaaagggttgcggatctagtgaatgaaaacaggcacttccgactggaaggtctgccgcctaccattttcgatgaattttttgaggcgtgtgcatttggctcagatcgctgcggtgttaatccagaactgaaccccattgggaaaaggataattccacagctgaagaggtgtcctttagctgctgaaactcttggacgtttactgaagcctatgctggatagagagcactggaatcagattgcaggaagtgagttgtgggagctgaaacaggagaaatatgacattttgccagtccttcgcttgagctatctgtatctaccttcctatctgagaaactgttttttgttttgctccatgtatcctaaaaaccatcagtttgacaaagatactctggtgaacagttggatagcagctgggttagttgagtcctgcaagggtggcaagctagaaagcaatggataccaatattttgaggatctactgcatagatcccttcttcagaaggaatcaaacagcccaacggattccaagtatgttatgcataagctgatccatgatatggcacaactgatttctgagcacgagtgcttcattgtaaaaggcgaaactgatctgacaaaaatccctcaaggcgttcgccatctttcaataattggcagtagtagtctcagtgaaaccaacctaataatggtatgcaagtacaaaacgctgcgctccattgtgtgccatggtgttgagacttacatacttactgctgtagcgaagtactggtttgaagaacttaccaaaatacgaatgctgggtttcctgtcctgtgaggtgaactctctgcctgagaacattgacaacctgaagcttctccggtacctgaatatcagcgattgtactttcgaagagcttcctcaatctttttggcgacttcagaatttacaaattgtagatgctcagaaatgccgtgtccaacaaattcctgatgacttcaatcgattgggtaatttgcagagatttaagttgaggggtagaattatcaaacaacccggcacttatgaactttaa
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| Protein seq | MAMLRPAAMDLFLSATSIVSNANEWFEFLGTAFSAASLLLSRWRRRRQGDEAERRQLQWKGQDAKMKQLHYCMLQLPDLIHHAEWLSFVKDDKEVAKLLPELKARVHDAYDLLEEFNHHHHHQQQLQLDLGQDAAAEKAGDDFLQSIAGGNTVREILDDLNCLRNTLEGVIDRHARSEPHQIGKLLRPAMTSFYDKSKFRSLEDEVNELLELLGVKICSARPHKRRIKGETASASKRTKRNSGVPSASTRTSCSNQEIASDNVTVLAISGIGGVGKTTLARQVYNDERVKGYFDVRIWISVSDDFNVKRLTKEFIEFALANWMQSDNLCNLQQSLTESIVKFRFLLVLDDVWDDVYANQDNRWQNFLEPLKSAQQGSAILLTTRSQRVADLVNENRHFRLEGLPPTIFDEFFEACAFGSDRCGVNPELNPIGKRIIPQLKRCPLAAETLGRLLKPMLDREHWNQIAGSELWELKQEKYDILPVLRLSYLYLPSYLRNCFLFCSMYPKNHQFDKDTLVNSWIAAGLVESCKGGKLESNGYQYFEDLLHRSLLQKESNSPTDSKYVMHKLIHDMAQLISEHECFIVKGETDLTKIPQGVRHLSIIGSSSLSETNLIMVCKYKTLRSIVCHGVETYILTAVAKYWFEELTKIRMLGFLSCEVNSLPENIDNLKLLRYLNISDCTFEELPQSFWRLQNLQIVDAQKCRVQQIPDDFNRLGNLQRFKLRGRIIKQPGTYEL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.448496 | 8.783967 | 1.947056 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0365300 | RBH | 0.484878 | 0.649734 | 1.300019 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g20030 | RBH | 0.334462 | 0.426577 | 0.339087 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0365300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0007630 | RBH | 0.286130 | 11.597620 | 2.368975 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0007620 | RBH | 0.145915 | 2.054862 | 1.323060 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0007840 | RBH | 1.222937 | 6.647391 | 2.422078 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0007680 | RBH | 0.307153 | 0.114297 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0007820 | RBH | 2.632844 | 5.045442 | 3.563454 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0207000 | RBH | 10.0514405 | 11.146074 | 4.978439 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0007780 | RBH | 0.203880 | 0.446622 | 0.586862 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0186800 | RBH | 7.0944305 | 7.4502315 | 12.5641715 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0007720 | SBH | 0.057089 | 0.073778 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0007530 | RBH | 0.139686 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0007440 | RBH | 4.258568 | 16.645214 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0007460 | RBH | 0.366407 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0007510 | RBH | 0.268954 | 5.025318 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G008070 | RBH | 0.598122 | 0.345142 | 0.550785 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
