Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_09g0007790 | OGI:03070620 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr09:12330715-12332035 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgaagggaaaatcctaccgaggcaattgtatttgttttggtagatatgctcttcaagcacttgaacccacttggattacggcgaggcagatagaagcaggacgaagagcaatgacacgatatgcacgtcgtggtggaaaaatctgggtacgtatatttcccgacaaaccggttacaataagaccgaccgaaacacGtatgggttcgggaaagggatcccccgaatattgggtagccgttgttaaaccaggtcgaatactttataaaatgggcggagtatccgaaactgtagctagagcagctatttccatagctgcCagcaaaatgcccatacgaagtcaatttcttcggttagaaatataacccccCAAaaaaaagtagtattgaaaataaaaaaccaggttcttctttctggaaagacaatatttctttcatccttttgcattgaaataaCaaattgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataacaGtggagctcgaaaattGatgtgtattcgagtcataggagctgctagtagtcagcgatatgctcgtattggtgatgttattgttgctgtaatcaaagacgtagtgccccaaatgcctctagaaagatccgaagtaattcgagctgtaattgtacgtacatgtaaagagttcaaatgcgaagacggtataataatacgctatgacgacaatgcagcggttatcattgatcaaaaaggaaatccaaaaggaactcgcgtttttggcgcgatcgccgaggaattgagagaattgaattttactaaaatagtttcattagctcctgaagtattataaatactagtagacaagatatagatcaaataaaaaattagtagattgtgtttcacgtatatgctttagaatccaaaacgaaaagaaaaaagagaacAtgttgattatagaaaaattaggaggaacctagaattagagtcttatgggcaaggacactattgctgatttactaacctctataagaaacGcggacatgaataaaaaaggaactgttcgggtagtatctacaaatattaccgaaaacattgttaaaatacttctacgagagggttttattgaaagtgttcggaaacatcaggaaagtaacagatatttcttggtttcaactttgcgacatcaaaagagaaagactagaaagggaatatatagaactagaacctttttaaagCgtatcagccgacctggcttacgaatttatgccaactatcaaggaattcctaaggttttgggcggaatgggaattgctattctttctactt
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| CDS seq | atgaagggaaaatcctaccgaggcaattgtatttgttttggtagatatgctcttcaagcacttgaacccacttggattacggcgaggcagatagaagcaggacgaagagcaatgacacgatatgcacgtcgtggtggaaaaatctgggtacgtatatttcccgacaaaccggttacaataagaccgaccgaaacacGtatgggttcgggaaagggatcccccgaatattgggtagccgttgttaaaccaggtcgaatactttataaaatgggcggagtatccgaaactgtagctagagcagctatttccatagctgcCagcaaaatgcccatacgaaataacaGtggagctcgaaaattGatgtgtattcgagtcataggagctgctagtagtcagcgatatgctcgtattggtgatgttattgttgctgtaatcaaagacgtagtgccccaaatgcctctagaaagatccgaagtaattcgagctgtaattgtacgtacatgtaaagagttcaaatgcgaagacggtataataatacgctatgacgacaatgcagcggttatcattgatcaaaaaggaaatccaaaaggaactcgcgtttttggcgcgatcgccgaggaattgagagaattgaattttactaaaatagtttcattagctcctgaagtattataa
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| Protein seq | MKGKSYRGNCICFGRYALQALEPTWITARQIEAGRRAMTRYARRGGKIWVRIFPDKPVTIRPTETRMGSGKGSPEYWVAVVKPGRILYKMGGVSETVARAAISIAASKMPIRNNSGARKLMCIRVIGAASSQRYARIGDVIVAVIKDVVPQMPLERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAIAEELRELNFTKIVSLAPEVL |
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| Function | 50S ribosomal protein L16, chloroplastic [UniProtKB/Swiss-Prot:P0C443] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_09g0007790 | OsNaBo_09g0007790.01 | Chr09 | 12330715 | 12332035 | + | NAM | ||
| CDS seq | atgaagggaaaatcctaccgaggcaattgtatttgttttggtagatatgctcttcaagcacttgaacccacttggattacggcgaggcagatagaagcaggacgaagagcaatgacacgatatgcacgtcgtggtggaaaaatctgggtacgtatatttcccgacaaaccggttacaataagaccgaccgaaacacGtatgggttcgggaaagggatcccccgaatattgggtagccgttgttaaaccaggtcgaatactttataaaatgggcggagtatccgaaactgtagctagagcagctatttccatagctgcCagcaaaatgcccatacgaaataacaGtggagctcgaaaattGatgtgtattcgagtcataggagctgctagtagtcagcgatatgctcgtattggtgatgttattgttgctgtaatcaaagacgtagtgccccaaatgcctctagaaagatccgaagtaattcgagctgtaattgtacgtacatgtaaagagttcaaatgcgaagacggtataataatacgctatgacgacaatgcagcggttatcattgatcaaaaaggaaatccaaaaggaactcgcgtttttggcgcgatcgccgaggaattgagagaattgaattttactaaaatagtttcattagctcctgaagtattataa
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| Protein seq | MKGKSYRGNCICFGRYALQALEPTWITARQIEAGRRAMTRYARRGGKIWVRIFPDKPVTIRPTETRMGSGKGSPEYWVAVVKPGRILYKMGGVSETVARAAISIAASKMPIRNNSGARKLMCIRVIGAASSQRYARIGDVIVAVIKDVVPQMPLERSEVIRAVIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAIAEELRELNFTKIVSLAPEVL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 102.134773 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g19954 | RBH | 1.304088 | 1.042007 | 0.476212 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0007540 | RBH | 0.000000 | 0.000000 | 10.769046 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0007530 | RBH | 4.347136 | 0.000000 | 14.952347 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0007750 | RBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0007590 | RBH | 8.871398 | 1.715054 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0007720 | RBH | 38.926903 | 19.726704 | 161.021851 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0205600 | RBH | 11.7140845 | 7.2092875 | 6.559548 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0007690 | RBH | 8.327229 | 1.188676 | 9.175951 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0227500 | SBH | 778.5061645 | 178.1831285 | 159.061943 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0007640 | RBH | 3.821596 | 0.502089 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0007440 | RBH | 27.437029 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0007360 | RBH | 80.257927 | 110.143013 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0007360 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0007430 | RBH | 13.668886 | 9.578989 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G007980 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0026260 | SBH | 50.329266 | 295.260925 | 247.826050 |
