Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_09g0004590 | OGI:09022270 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr09:7607045-7610098 | ||||||||
| Gene Symbol | MMS2, OsUEV1C, UEV1C | ||||||||||
| DNA seq | cataccgccagcttaaagaaaagcatgcacggactatattcatgtaggcaatataaaggacctgcagttacacatttcttgacacagcatctgtttccaattttacatccctcatactgccaattttgccaaaccagatcacccttttcatccgactcatctccttaatcaacagccacccgacgaatcacgaggcgcaaagttggactcggttgttggtacacagaaagcagggcatatatcaaattgaactagaaaacaattaagcgcgggagccagataaatacaagttgatgatgttgaatctgaattctggagatgagccaggaggtaaatactcctctagaagaacgtcccttctggaggttgcaccaacttgcgattctgcggggttgccatctccttcttgagctgggtaaggatagtctccatggtgtactcgcgctgccagtttgctagaacaccaaacttcctcgagtcaacctataggatcacagcaccAaatgaatatcaatcagagggagtagcctgcacaaaataaataaacttggcatctacatttgggaggagagaataccgctccagtctcatgattaacacacgacatattgattcttgaatgaaaccggacagatggtggcttctctgggtagtccttgtcacagaacagcttcagctggtagatgcgaccttcatggacactctgccagattgaggaagaaacagacacttagtaaaagttaataatattttatataagcagtacaagaggagctaggtggactctcaaactgtcaaacatgagaaagcatctagagctaatatatgtaagttttagcttgtagtagtgattctcctgcctttatggtcaacataaggaagttgaaaagctcaagtgtgcctcttcccagaaatataattccataaccttgtcacacatatcttaatgccattcaaatagcctttttccactaataaagacatcttctccactaataaaaacccaagatgaagcacagtacgacggtaaagatataaagccacaggagaagattttccatatgagtaatatgatatattgtgagtgtatcaggatagagtccataatctcacattatgtggaccaatgatggtgccagtccaagaccgcatgtagatgtcatctgcatcatccattccatagctcacggttccatctccaatgcccttttcaccacgttcaagctcttctagcaacctgaagtttcgcggaactgcaggcattttacatattagtcaactcctcaggatataatgcagttaccctcttaaatctacttatatagaaattgcataatggtgatatcattgcacagaacaaaagaagacaaaatcaacctagaaacagcatgagaagttttcatacccatgcatcaagtactgaattacagagcaaagacggctacaaccgagataaataaaatggcaatatcgattcccagtttcagaatttagtggatttgtagatgattactattttctgaagaaaaaaaaaagaataacaccaatgtatcattctcccgaatgagggacaagagcactgcagctcagctgttgttttcttgtgaagcaaaacaaaattgaatatatctgccattggcgtggggggttaacaacaatgcaaaaaaaaaaaaaaatgtattggtctgtttgcaagacgatgaagaatcttgtgactcgaataccatacacccagaacagatatgtcggcatttgttaaacgcaagtcattgttttatctagtgcacagacactcagagtgcagtggctctaaaacgggcaatcatggttttgacttctcagattgaagcctgaactttgacttgagattgattatacaatgtattatctcaaaacagaatagtagacagaaatagtgtaacttcacacacaaagttcatcagtggaatataatgaacaaataacatgatctttggcaagtagtctgaatcacaaggccgccgaggtgaaacaatttcagtacaattgtttgaatggtgcaaagttccaacttgtgattagaacacaaaaaggcattacgttcaaacctccaaaccggagacgctaaaagctatttaattccatctaggaaagaaaatattaagagaagaccgaacttaacactgcaagaaaaacgcaatatagcattcaatacccaggtttttataaagcacacaacctgcatgcccacacgaaaaaacagatccagcaaaaagaaaccaacacagtctcatccagccgcgatgaggcctatacagcagctatctaaggaaaccatgatcagaagagcatatctatcttcattaaaaacatttccacttaaagtcaagtgatacaactaataatcccgctgataattatgcctcatagtccacttagagctaatggtcccaggcacttctcagctctccccttgtaacacccaagcagctcaaggaccacttgttagcaaagggaacaatttcatcctctcaggataccacaaatttactgccaaagccaaaccatcatcaacatgccgtaaataaattcgcaaaccgagcaaaccaggccatctagagagatcccatgaccgctgcacgcatgcaaaccaagctaaatcaccagatggatggaacccatatggtacaaaaaccgcagatcgctaattccaacaaacaaaccaacgcgtcggcgtctcgcctgatcaccaaccacatcgagcacagcacagccatggcgggacacagcgccaaagttacgaggcgcggaacggagcgaaacccgcgtggattctcctcctcagcctcctccgatccgaaggccctaggcactcgcgagaaaagggggggaagggaagaagggaaggggggattcgatcgatcgctcaccgacgacgctcgatccggcgccggagctccccagcgtcatcgccgatcgatgggtggatcgccggagaggaggaggagggtttggggattggcgaggggaggggggaaaggcaggcgaagtcggaggaggattccttgcggctgt
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| CDS seq | atgacgctggggagctccggcgccggatcgagcgtcgtcgttccgcgaaacttcaggttgctagaagagcttgaacgtggtgaaaagggcattggagatggaaccgtgagctatggaatggatgatgcagatgacatctacatgcggtcttggactggcaccatcattggtccacataatagtgtccatgaaggtcgcatctaccagctgaagctgttctgtgacaaggactacccagagaagccaccatctgtccggtttcattcaagaatcaatatgtcgtgtgttaatcatgagactggagcggttgactcgaggaagtttggtgttctagcaaactggcagcgcgagtacaccatggagactatccttacccagctcaagaaggagatggcaaccccgcagaatcgcaagttggtgcaacctccagaagggacgttcttctag
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| Protein seq | MTLGSSGAGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPHNSVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMSCVNHETGAVDSRKFGVLANWQREYTMETILTQLKKEMATPQNRKLVQPPEGTFF |
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| Function | Ubiquitin-conjugating enzyme E2 variant 1C [UniProtKB/Swiss-Prot:Q9SJ44] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_09g0004590 | OsNaBo_09g0004590.01 | Chr09 | 7607045 | 7610098 | - | NAM | ||
| CDS seq | atgacgctggggagctccggcgccggatcgagcgtcgtcgttccgcgaaacttcaggttgctagaagagcttgaacgtggtgaaaagggcattggagatggaaccgtgagctatggaatggatgatgcagatgacatctacatgcggtcttggactggcaccatcattggtccacataatagtgtccatgaaggtcgcatctaccagctgaagctgttctgtgacaaggactacccagagaagccaccatctgtccggtttcattcaagaatcaatatgtcgtgtgttaatcatgagactggagcggttgactcgaggaagtttggtgttctagcaaactggcagcgcgagtacaccatggagactatccttacccagctcaagaaggagatggcaaccccgcagaatcgcaagttggtgcaacctccagaagggacgttcttctag
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| Protein seq | MTLGSSGAGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPHNSVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMSCVNHETGAVDSRKFGVLANWQREYTMETILTQLKKEMATPQNRKLVQPPEGTFF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.881009 | 105.272957 | 55.176136 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0297100 | RBH | 9.470204 | 8.056205 | 52.420483 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g12570 | RBH | 5.695061 | 4.818835 | 12.010252 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0297100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0004580 | RBH | 5.033173 | 145.805878 | 20.969469 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0004610 | RBH | 2.604153 | 42.604042 | 19.440193 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0004680 | RBH | 7.087367 | 115.063004 | 43.429100 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0004480 | RBH | 0.679526 | 3.081928 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0004530 | RBH | 23.460079 | 96.499580 | 61.052746 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0127000 | RBH | 33.715334 | 56.590271 | 49.5248605 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0004670 | RBH | 1.413668 | 8.713632 | 5.220666 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0120200 | RBH | 59.10458 | 56.0249155 | 100.5908855 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0004670 | RBH | 2.321205 | 0.851779 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0004520 | RBH | 3.204332 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0004600 | RBH | 38.496426 | 79.335899 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0004400 | RBH | 4.777583 | 0.0 | 10.589532 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0004450 | RBH | 1.648872 | 39.785686 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G004740 | RBH | 1.536484 | 28.470610 | 21.601105 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0030900 | RBH | 3.459232 | 0.000000 | 27.959084 |
