Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_09g0003980 | OGI:09019190 | 13/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr09:6576099-6577854 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctagttcaccactacctccatatcacccaccttcaccttccctttcccagcacttgcaccaccgcctccccctgaaactcctccaccaacctcccccttagctgcaaatttagaaccacctcctgccttgttaattcctcctcctggcctgccctcattcttcaacaatggcctctcgccaaagcgcttcgtcgagaagcgattgttttcccagcctccccttccgggtcggccagcaaaacctcctcggcgtggaccaaagctacgtgatccccttggcctgaaaccactcctttgctgcccccaaccatgatttccctgctgcccaaaaccatatcccggctcaaaacctagccggccagcatcaaaccttgcaccaaaaaactcttcttcctcctcccagaagccatctcccctctccctaccacggccatccgagcgaccgctgccttcacctctccatgctatggtgacttctcgcctgcttcgctctccctgggcgccgccactctgttcgcctaccgattgcttgcgctcgcgagtttgagaggtctgcactaactgtgtggtgcaaagccctacagtcacgtcgcttcgtttttgcctagttgctccctctgtagcccacatatgtcggcccgcacgcgagagtagttggcccagtccttggcaacatttgaattggaccaaattcgaccttactccaaacgaaacaaatttatgttcactgccgcccttcgacaataactcgaccgaccgctttgacgcctcgatatccgacgtgcactgtccccctggactcatcaaaactatccttccttctttttctcttttgtcgaggttcatcagaaacttcaatgtcttagcattgtcgtccaaactagacctcaccgccgccggtggcagcggcggcggcgccgccgcagccttctccattatgctgcatgtatgcacaacaggaagcctcatagaggcaagagatttgttgaccctatcaaggttctcctcagcaactggcaaattaacacggtttactgtcgtgaacctcaccggcgaagccacagacgctcgtttcttttttttcaaagcaactcctatgacgtccccaaaggttaaagtatgtgaaaccctagcctttggtaacggccctttccaaggtttacaggtagttgttttttgattcaccaccttttcaaccattttctttgccagttttctgttgccgacgaaaccagaattcatggagcacgaacttacctttggcgacgaactcatacaaagtaaatgttcacccgccttgagtatttcatccacggtgaagccttgatcgatggccttcttgacgaagctctcttccggcagcaccgaaccaccctacacctcctcctctaatcgacgctcctcacggtcaacttcatcctccgagctctcatcacccagagcccagaagcgtgaccccagcgcaacaggcttgggcacacacaacggttcgacagcatagtattttgtcggagcagaaaacccgcctctagaacaccccttcttatcccaagtcgaaacttccggcgaagtgcggcatggtgttgctgccaacacctccggccaccagttcctttggaacagccggctgtaaccacagatttgcactagctcctggagctaaagttaaccgttgaccaccaccagcacccttgcctccgaccaccttagctttcatcgggctagctaccccctttatcaagagcctccacctcat
More
|
||||||||||
| CDS seq | atgaggtggaggctcttgataaagggggtagctagcccgatgaaagctaaggtggtcggaggcaagggtgctggtggtggtcaacgccggctgttccaaaggaactggtggccggaggtgttggcagcaacaccatgccgcacttcgccggaagtttcgacttgggataagaaggggtgttctagaggcgggttttctgctccgacaaaatactatgctgtcgaaccgttgtgtgtgcccaagcctgttgcgctggggtcacgcttctgggctctgggtgatgagagctcggaggatgaagttgaccgtgaggagcgtcgattagaggaggaggtaagttcgtgctccatgaattctggtttcgtcggcaacagaaaactggcaaagaaaatggttgaaaaggtggtgaatcaaaaaacaactacctgtaaaccttggaaagggccgttaccaaaggctagggtttcacatactttaacctttggggacgtcataggagttgctttgaaaaaaaagaaacgagcgtctgtggcttcgccggtgaggttcacgacagtaaaccgtgttaatttgccagttgctgaggagaaccttgatagggtcaacaaatctcttgcctctatgaggcttcctgttgtgcatacatgcagcataatggagaaggctgcggcggcgccgccgccgctgccaccggcggcggtgaggtctagtttggacgacaatgctaagacattgaagtttctgatgaacctcgacaaaagagaaaaagaaggaaggatagttttgatgagtccagggggacagtgcacgtcggatatcgaggcgtcaaagcggtcggtcgagttattgtcgaagggcggcagtgaacataaatttgtttcgtttggagtaaggtcgaatttggtccaattcaaatgttgccaaggactgggccaactactctcgcgtgcgggccgacatatgtgggctacagagggagcaactaggcaaaaacgaagcgacgtgactgtagggctttgcaccacacagttagtgcagacctctcaaactcgcgagcgcaagcaatcggtaggcgaacagagtggcggcgcccagggagagcgaagcaggcgagaagtcaccatagcatggagaggtgaaggcagcggtcgctcggatggccgtggtagggagaggggagatggcttctgggaggaggaagaagagttttttggtgcaaggtttgatgctggccggctaggttttgagccgggatatggttttgggcagcagggaaatcatggttgggggcagcaaaggagtggtttcaggccaaggggatcacgtagctttggtccacgccgaggaggttttgctggccgacccggaaggggaggctgggaaaacaatcgcttctcgacgaagcgctttggcgagaggccattgttgaagaatgagggcaggccaggaggaggaattaacaaggcaggaggtggttctaaatttgcagctaagggggaggttggtggaggagtttcagggggaggcggtggtgcaagtgctgggaaagggaaggtgaaggtgggtgatatggaggtagtggtgaactag
More
|
||||||||||
| Protein seq | MRWRLLIKGVASPMKAKVVGGKGAGGGQRRLFQRNWWPEVLAATPCRTSPEVSTWDKKGCSRGGFSAPTKYYAVEPLCVPKPVALGSRFWALGDESSEDEVDREERRLEEEVSSCSMNSGFVGNRKLAKKMVEKVVNQKTTTCKPWKGPLPKARVSHTLTFGDVIGVALKKKKRASVASPVRFTTVNRVNLPVAEENLDRVNKSLASMRLPVVHTCSIMEKAAAAPPPLPPAAVRSSLDDNAKTLKFLMNLDKREKEGRIVLMSPGGQCTSDIEASKRSVELLSKGGSEHKFVSFGVRSNLVQFKCCQGLGQLLSRAGRHMWATEGATRQKRSDVTVGLCTTQLVQTSQTRERKQSVGEQSGGAQGERSRREVTIAWRGEGSGRSDGRGRERGDGFWEEEEEFFGARFDAGRLGFEPGYGFGQQGNHGWGQQRSGFRPRGSRSFGPRRGGFAGRPGRGGWENNRFSTKRFGERPLLKNEGRPGGGINKAGGGSKFAAKGEVGGGVSGGGGGASAGKGKVKVGDMEVVVN |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_09g0003980 | OsNaBo_09g0003980.01 | Chr09 | 6576099 | 6577854 | - | NAM | ||
| CDS seq | atgaggtggaggctcttgataaagggggtagctagcccgatgaaagctaaggtggtcggaggcaagggtgctggtggtggtcaacgccggctgttccaaaggaactggtggccggaggtgttggcagcaacaccatgccgcacttcgccggaagtttcgacttgggataagaaggggtgttctagaggcgggttttctgctccgacaaaatactatgctgtcgaaccgttgtgtgtgcccaagcctgttgcgctggggtcacgcttctgggctctgggtgatgagagctcggaggatgaagttgaccgtgaggagcgtcgattagaggaggaggtaagttcgtgctccatgaattctggtttcgtcggcaacagaaaactggcaaagaaaatggttgaaaaggtggtgaatcaaaaaacaactacctgtaaaccttggaaagggccgttaccaaaggctagggtttcacatactttaacctttggggacgtcataggagttgctttgaaaaaaaagaaacgagcgtctgtggcttcgccggtgaggttcacgacagtaaaccgtgttaatttgccagttgctgaggagaaccttgatagggtcaacaaatctcttgcctctatgaggcttcctgttgtgcatacatgcagcataatggagaaggctgcggcggcgccgccgccgctgccaccggcggcggtgaggtctagtttggacgacaatgctaagacattgaagtttctgatgaacctcgacaaaagagaaaaagaaggaaggatagttttgatgagtccagggggacagtgcacgtcggatatcgaggcgtcaaagcggtcggtcgagttattgtcgaagggcggcagtgaacataaatttgtttcgtttggagtaaggtcgaatttggtccaattcaaatgttgccaaggactgggccaactactctcgcgtgcgggccgacatatgtgggctacagagggagcaactaggcaaaaacgaagcgacgtgactgtagggctttgcaccacacagttagtgcagacctctcaaactcgcgagcgcaagcaatcggtaggcgaacagagtggcggcgcccagggagagcgaagcaggcgagaagtcaccatagcatggagaggtgaaggcagcggtcgctcggatggccgtggtagggagaggggagatggcttctgggaggaggaagaagagttttttggtgcaaggtttgatgctggccggctaggttttgagccgggatatggttttgggcagcagggaaatcatggttgggggcagcaaaggagtggtttcaggccaaggggatcacgtagctttggtccacgccgaggaggttttgctggccgacccggaaggggaggctgggaaaacaatcgcttctcgacgaagcgctttggcgagaggccattgttgaagaatgagggcaggccaggaggaggaattaacaaggcaggaggtggttctaaatttgcagctaagggggaggttggtggaggagtttcagggggaggcggtggtgcaagtgctgggaaagggaaggtgaaggtgggtgatatggaggtagtggtgaactag
More
|
|||||||
| Protein seq | MRWRLLIKGVASPMKAKVVGGKGAGGGQRRLFQRNWWPEVLAATPCRTSPEVSTWDKKGCSRGGFSAPTKYYAVEPLCVPKPVALGSRFWALGDESSEDEVDREERRLEEEVSSCSMNSGFVGNRKLAKKMVEKVVNQKTTTCKPWKGPLPKARVSHTLTFGDVIGVALKKKKRASVASPVRFTTVNRVNLPVAEENLDRVNKSLASMRLPVVHTCSIMEKAAAAPPPLPPAAVRSSLDDNAKTLKFLMNLDKREKEGRIVLMSPGGQCTSDIEASKRSVELLSKGGSEHKFVSFGVRSNLVQFKCCQGLGQLLSRAGRHMWATEGATRQKRSDVTVGLCTTQLVQTSQTRERKQSVGEQSGGAQGERSRREVTIAWRGEGSGRSDGRGRERGDGFWEEEEEFFGARFDAGRLGFEPGYGFGQQGNHGWGQQRSGFRPRGSRSFGPRRGGFAGRPGRGGWENNRFSTKRFGERPLLKNEGRPGGGINKAGGGSKFAAKGEVGGGVSGGGGGASAGKGKVKVGDMEVVVN
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 1.960504 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g11220 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0003960 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0004070 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0107400 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0004060 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0103100 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0004030 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0004030 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0004020 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0003950 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0003990 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G004110 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
