Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_09g0001940 | OGI:09009530 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr09:3395992-3399937 | ||||||||
| Gene Symbol | OsWD40-167 | ||||||||||
| DNA seq | ctcaaaacctcgtcaagaacctgaaaccaaaaattctctctcgcctcgcgcgaaatctcccgtcgatccaccgcggggacaagctctagatctctctcctacgatccaccacgcggagaagctctcgatctctctccttcgatcgatagtttcgtcgcgctaagtcggtggtgatctgatctccgcgttctttcgggggagtttcttgctaggTttttctgggccgagctcacccatggaggcgccgggctccggctcggtcccaacggcgaagcgccgccggctcgtgccacggcctccgccggtgccgcttgaggtggccggcgcgagggggccgtacatgccgccgctatgtattaaatccaagaacccgtccttgaaatgctacgtgagttgctgcaaatgactccccttttcttagcttcttCccccaagttgaattcttggatggatttccgtccgctcgttcgggcctgatggaatgtgtggaaggaatccgttgatgccgcaattatggatgttttaggacttaggaggttctcgatgtcgttcttgataatccgagagatagatttgctctgactcaattttagatgattcgctgattcttgatgtctgcagagccaattatattggtctttgttggcttgttttagatgttgaaattttgtagaggaatctgtgatccgtgccccaatcctggaatgaggaaatgttaatgatgtgggaatataattgatcatgcatgattctttttagagtgcaaaagaaattcgaaatcttggtgattttgtcctatactcaatctgttttttggccaaaaattttgccaaaagaaaatagtcagtgtaacttgttcagaaccaagttcattcgtcagttgcatcaatattcatcaccaatgttcgaagaaacctagcacaatagtcgagtggaagacaatgccaagtttgccaacattagttacataatccatgccaagcataaatcacagaatctagataacctttagtaatcgatattattcctggacctcaataatatgtttttgaagtaatatactgaatacactgttcttttgttaaacatgacagtgagaattgctcgtaggtcccaatcctgattttcctttgtattcctcaattttggggttgtcctttcacataaaaatcggtatgaatcagtccagtgttctgttaagcTtttttgtggacaaatcgattgtgtgcaataaaaaaacaggtacaaactgttcttgatgttttgacaccaacagtatttctcttcagtgaagtactgaaattttcagtcatgtaggaattgttttcttcttgtgtcacaaattcaatcttgtctcttcaataTttgaactttcaacatagtaatcattgaagtatagttgatagtgcaatggtacttagacttgtgactagtgttattattttgtattagatcttcaaagtggtaagatgactaatttgtatttctatatttatggtgacagggtgacagattcatacctgataggtcagcaatggacatggatatggcatatttcctcctgacagaacctaagaaggagaaggaaaatactgacatgctatcaccagctgaagaagcttacaagaggcttcttgccgagaaactcctgaacaacagaagccggattcttgcattcaggaacaaaccaccagaacctgaaggaattgtgcaacagctattatatgaaactttgacttccagtcagacaaagcctgctaggaagtgtagacacataccccaggtatgcaaattaatttgttgcttcaaacatatttttaggattttttttaatatacaccattcttagcttagcttaaattttcagtcttctgagaggacgttagatgcccctgggattgttgatgacttctatcttaacatattggactggggatgcAaaaatgtgatgtccattgcgctggggaacaccttgtacctctggaattcagctgatggatctattatggaccttgtaacaattgacgaagatgatggtcccatcactagtgttagttggtcttgtgatgggcagcggattgccgttggcctcaactcttctgacattcagctgtgggacaccagctctaatcgcatggtcagttatctagagttctagacacttgctctgtattttaagcagattaacttgtactgatagatatgcatatgtataaatgtggcagctgagaacacttcatggtgtacaccaatcaagggttggttcactggcctggaacaagaacatactgacaactggtggaatggatggaaacattgtAaacaatgatgtcaggatgagatcccatgttgttcatatatatcgagggcatgaggatgaggtatgtgggttgagatggtcaggaagtggccagcaattggcaagtggtggcaacgacaaccgggtacacatatgggatgtatcaatggcatcttctaatctatctctaggtcataaccggtggcttcatagatttggcgatcatttagctgcagtgaaggcccttgcatggtgtccgttccagagcaatttgcttgcatctggtggtggtggagatgatcggtgcatcaggttttggaatacacacactggtttatgtttgaattctgttgatactggatcacaggtgtgcggactactctggaataagaatgaaaaggagctgctaagtgctcacggatatgtacagaattcacttgcattgtggaaatacccttcaatggttaaattggcagaacttgaagaccacactgctcgtgttctttgcctggctcaggtatatctctttctattgtggtatagtaatgatgagtaattgcttatgatttgtttgctgatttcgtttttatgctatatggttgcagagccctgatggatttacagtagcctctgttgcagcagatgagactctaaggttatggaaaatttttgaaacttctgaagatgccaaacccgtattcaagacagtaaacactggaatgtttaacagtttcagccatatcagatgaggtatgctcaattgtactccgcatcgactgtatgttgtgaatcgccgaatcctaaaagggtatcgAaaatatgtatgttctgataggactttcgaaaataagtttacaattgatgaatattctttattagttcttttcattcgttaatcacaaaagcaagtatgctaattgtttaaggattttgtgccaggtgaaaaatgccattttagtgtagatattgacagcaaatcctatctgatttgttttcagcatttcttttcacaacaataaccgtgatgTtttccatactttcaaaagattgttataataaaacatttacattgttttccacatacatactgtctgttttatctgtgacattcttttgtcgtattttgttgagagcaataagtcttgtttgtatattggtttcttcgtaagaaaattgtactagtaagttttaccagagtccacaaGgaTGttttatctgcaattactgttgcactataatgaatttataatcaattattgatacagtttgtccttgtcttccaggataatgtgagagttggaccgtggggaactgactgttcatattttcaggatctcatagcattagttgtaaccatggtcaccGgtacgaaaggtggagaactggagatgccagagcttcatgtgtatatatacgtttcattttttttttgcatctggatgataaatgttttctggccggcctactttcttttctgtgctaggctgacaagaaactgtaattggccatttcttttatttgctaggctcacagaaactgtaatcaaaagcaaccgttcatttcatgttggtgtattggttcttgatgccatcatgctactgatttgtttggcaatagatactgccttcgttccataaagaacgagca
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| CDS seq | atggaggcgccgggctccggctcggtcccaacggcgaagcgccgccggctcgtgccacggcctccgccggtgccgcttgaggtggccggcgcgagggggccgtacatgccgccgctatgtattaaatccaagaacccgtccttgaaatgctacggtgacagattcatacctgataggtcagcaatggacatggatatggcatatttcctcctgacagaacctaagaaggagaaggaaaatactgacatgctatcaccagctgaagaagcttacaagaggcttcttgccgagaaactcctgaacaacagaagccggattcttgcattcaggaacaaaccaccagaacctgaaggaattgtgcaacagctattatatgaaactttgacttccagtcagacaaagcctgctaggaagtgtagacacataccccagtcttctgagaggacgttagatgcccctgggattgttgatgacttctatcttaacatattggactggggatgcAaaaatgtgatgtccattgcgctggggaacaccttgtacctctggaattcagctgatggatctattatggaccttgtaacaattgacgaagatgatggtcccatcactagtgttagttggtcttgtgatgggcagcggattgccgttggcctcaactcttctgacattcagctgtgggacaccagctctaatcgcatgctgagaacacttcatggtgtacaccaatcaagggttggttcactggcctggaacaagaacatactgacaactggtggaatggatggaaacattgtAaacaatgatgtcaggatgagatcccatgttgttcatatatatcgagggcatgaggatgaggtatgtgggttgagatggtcaggaagtggccagcaattggcaagtggtggcaacgacaaccgggtacacatatgggatgtatcaatggcatcttctaatctatctctaggtcataaccggtggcttcatagatttggcgatcatttagctgcagtgaaggcccttgcatggtgtccgttccagagcaatttgcttgcatctggtggtggtggagatgatcggtgcatcaggttttggaatacacacactggtttatgtttgaattctgttgatactggatcacaggtgtgcggactactctggaataagaatgaaaaggagctgctaagtgctcacggatatgtacagaattcacttgcattgtggaaatacccttcaatggttaaattggcagaacttgaagaccacactgctcgtgttctttgcctggctcagagccctgatggatttacagtagcctctgttgcagcagatgagactctaaggttatggaaaatttttgaaacttctgaagatgccaaacccgtattcaagacatttgtccttgtcttccaggataatgtgagagttggaccgtggggaactgactgttcatattttcaggatctcatagcattagttgtaaccatggtcaccGgtacgaaaggtggagaactggagatgccagagcttcatgtgtatatatacgtttcattttttttttgcatctggatgataaatgttttctggccggcctactttcttttctgtgctaggctgacaagaaactgtaattggccatttcttttatttgctaggctcacagaaactgtaatcaaaagcaaccgttcatttcatgttggtgtattggttcttgatgccatcatgctactgatttgtttggcaatagatactgccttcgttccataa
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| Protein seq | MEAPGSGSVPTAKRRRLVPRPPPVPLEVAGARGPYMPPLCIKSKNPSLKCYGDRFIPDRSAMDMDMAYFLLTEPKKEKENTDMLSPAEEAYKRLLAEKLLNNRSRILAFRNKPPEPEGIVQQLLYETLTSSQTKPARKCRHIPQSSERTLDAPGIVDDFYLNILDWGCKNVMSIALGNTLYLWNSADGSIMDLVTIDEDDGPITSVSWSCDGQRIAVGLNSSDIQLWDTSSNRMLRTLHGVHQSRVGSLAWNKNILTTGGMDGNIVNNDVRMRSHVVHIYRGHEDEVCGLRWSGSGQQLASGGNDNRVHIWDVSMASSNLSLGHNRWLHRFGDHLAAVKALAWCPFQSNLLASGGGGDDRCIRFWNTHTGLCLNSVDTGSQVCGLLWNKNEKELLSAHGYVQNSLALWKYPSMVKLAELEDHTARVLCLAQSPDGFTVASVAADETLRLWKIFETSEDAKPVFKTFVLVFQDNVRVGPWGTDCSYFQDLIALVVTMVTGTKGGELEMPELHVYIYVSFFFCIWMINVFWPAYFLFCARLTRNCNWPFLLFARLTETVIKSNRSFHVGVLVLDAIMLLICLAIDTAFVP |
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| Function | Cell division cycle 20.1, cofactor of APC complex [UniProtKB/Swiss-Prot:Q9SZA4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_09g0001940 | OsNaBo_09g0001940.01 | Chr09 | 3395992 | 3399937 | + | NAM | ||
| CDS seq | atggaggcgccgggctccggctcggtcccaacggcgaagcgccgccggctcgtgccacggcctccgccggtgccgcttgaggtggccggcgcgagggggccgtacatgccgccgctatgtattaaatccaagaacccgtccttgaaatgctacggtgacagattcatacctgataggtcagcaatggacatggatatggcatatttcctcctgacagaacctaagaaggagaaggaaaatactgacatgctatcaccagctgaagaagcttacaagaggcttcttgccgagaaactcctgaacaacagaagccggattcttgcattcaggaacaaaccaccagaacctgaaggaattgtgcaacagctattatatgaaactttgacttccagtcagacaaagcctgctaggaagtgtagacacataccccagtcttctgagaggacgttagatgcccctgggattgttgatgacttctatcttaacatattggactggggatgcAaaaatgtgatgtccattgcgctggggaacaccttgtacctctggaattcagctgatggatctattatggaccttgtaacaattgacgaagatgatggtcccatcactagtgttagttggtcttgtgatgggcagcggattgccgttggcctcaactcttctgacattcagctgtgggacaccagctctaatcgcatgctgagaacacttcatggtgtacaccaatcaagggttggttcactggcctggaacaagaacatactgacaactggtggaatggatggaaacattgtAaacaatgatgtcaggatgagatcccatgttgttcatatatatcgagggcatgaggatgaggtatgtgggttgagatggtcaggaagtggccagcaattggcaagtggtggcaacgacaaccgggtacacatatgggatgtatcaatggcatcttctaatctatctctaggtcataaccggtggcttcatagatttggcgatcatttagctgcagtgaaggcccttgcatggtgtccgttccagagcaatttgcttgcatctggtggtggtggagatgatcggtgcatcaggttttggaatacacacactggtttatgtttgaattctgttgatactggatcacaggtgtgcggactactctggaataagaatgaaaaggagctgctaagtgctcacggatatgtacagaattcacttgcattgtggaaatacccttcaatggttaaattggcagaacttgaagaccacactgctcgtgttctttgcctggctcagagccctgatggatttacagtagcctctgttgcagcagatgagactctaaggttatggaaaatttttgaaacttctgaagatgccaaacccgtattcaagacatttgtccttgtcttccaggataatgtgagagttggaccgtggggaactgactgttcatattttcaggatctcatagcattagttgtaaccatggtcaccGgtacgaaaggtggagaactggagatgccagagcttcatgtgtatatatacgtttcattttttttttgcatctggatgataaatgttttctggccggcctactttcttttctgtgctaggctgacaagaaactgtaattggccatttcttttatttgctaggctcacagaaactgtaatcaaaagcaaccgttcatttcatgttggtgtattggttcttgatgccatcatgctactgatttgtttggcaatagatactgccttcgttccataa
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| Protein seq | MEAPGSGSVPTAKRRRLVPRPPPVPLEVAGARGPYMPPLCIKSKNPSLKCYGDRFIPDRSAMDMDMAYFLLTEPKKEKENTDMLSPAEEAYKRLLAEKLLNNRSRILAFRNKPPEPEGIVQQLLYETLTSSQTKPARKCRHIPQSSERTLDAPGIVDDFYLNILDWGCKNVMSIALGNTLYLWNSADGSIMDLVTIDEDDGPITSVSWSCDGQRIAVGLNSSDIQLWDTSSNRMLRTLHGVHQSRVGSLAWNKNILTTGGMDGNIVNNDVRMRSHVVHIYRGHEDEVCGLRWSGSGQQLASGGNDNRVHIWDVSMASSNLSLGHNRWLHRFGDHLAAVKALAWCPFQSNLLASGGGGDDRCIRFWNTHTGLCLNSVDTGSQVCGLLWNKNEKELLSAHGYVQNSLALWKYPSMVKLAELEDHTARVLCLAQSPDGFTVASVAADETLRLWKIFETSEDAKPVFKTFVLVFQDNVRVGPWGTDCSYFQDLIALVVTMVTGTKGGELEMPELHVYIYVSFFFCIWMINVFWPAYFLFCARLTRNCNWPFLLFARLTETVIKSNRSFHVGVLVLDAIMLLICLAIDTAFVP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.390116 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0242300 | RBH | 0.0 | 0.0 | 0.411126 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g06680 | RBH | 0.0 | 0.0 | 0.090202 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0242300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0001840 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0001790 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0001890 | RBH | 1.100506 | 1.196062 | 11.522876 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0001780 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0001940 | RBH | 0.0 | 0.0 | 0.938648 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0050500 | RBH | 0.0070415 | 0 | 0.170614 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0056700 | RBH | 0.074064 | 0 | 3.5956335 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0001880 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0001900 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0002000 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0001860 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0001920 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G001950 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0001880 | RBH | 0.000000 | 2.127501 | 0.787423 |
