Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_09g0001540 | OGI:09006700 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr09:2357067-2359455 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttccggtgccgagcaacggcgggtcagagcaccaccgccgcggcggccgcccacgacgtgacggagcccatcacggtgactgtggtgagaacggacagggacgccgccgtcaagcagtcgcactcgccgcctccaccggtgccggcggctatgatgacaggcgaaggcaacaagctggtgttcctcgacaacgcgccggaggccgtacgacctagacacgctactgtgcgcggccaaggtgatcggcaagggcgccacggggacgacgtcaccactccggctccgacaaggtaagcagaacgggctcccgttcctcgacatcgaggcgcctacgcttgcggcggcgaggtggtgggtgaggacgacgaggaggaggtggatccgtggatggtgggagacggagcggcgtcatcggtggccgctcggcgcgttggtggttgcgctattggtggagagaggtaggaggggagagacctaacagtgggccccaacaatattttttaatgaactgctgactggactgtcacacgtacgccacgtagatcaaaaccaccgtggattgggtcgagtgggtaattcgtccggtttgcatagttgagggtgaagaatgtccggttttgtggttcagggggtaattcggtcgatcgcgatagttcagagggtaattcgtactttttccaataactaaacacacctatagattgttatattttggaatgtaaatagtaatttattttaatacttaattattcatgattttgtagtagaatatcatgctaattatcactgaaaaaatatttatcactgacaatatctacaaagatttactttgcagatttctaacttacatttaaaaagaaaaaggaaaatacatgtactagtgtgtagtgtccgacgttatatgaaaaaccgagccagagtgagagggacccttgctgcaaaaaacggactgatttttaatggttgtgacacgctcccccaaatctgcagtcccgaagcgaagttcaatccatccccaaatgtcccggccaacccaacaccaccccactgccgccgccaccgccgtcatcctcctcttacttgcagtatccccggcgccgtccggcgcggatccggacgacgagcggtgcctgtcgagcctccagcaatctttgtccggcctccgcaactggagcaaggcctccttctccgccccctgcgagggcttcatctcccacctccagggcgtcacctgcaacaacggccgcgtctacaagctctccctcccgggcctctccctcgccggcaccatcccgccggacctctccaactgcaccaacctccagtcgctcgacctctcctccaacgcgctctccggcgccatccccccggagctctccggcctgctcaacctcgccgtgctcaacctctccgccaaccgcctctccggcgccatcccaagggacctcgcccgctgcgcatacctcaacgtcatagatctccacgccaaccagctcaccggcagcatccccgacgagctcggcctcctcgtccgcctctccaccttcgacgtctcctacaaccgcctctccggtcccatcccggtgctcctcgccaaccgctccgggacgacggggaggttcaatgccacctccttcgtcgggaacaaggacctgtacggctacccgctgccgcccatgcgggggcacgccctctccgtcctcgccatagtcggcatcggcctcggcagcggcctgctcagcctcgtcctcagcttctccgccgtctgcctctggctacgcgccaccgaccgcacggccaccatgcccggcgaggagggcaagatctcccacctcatgcccgactactgaacccaagatccgtgttggatttctggatccgatcgagcagtggagcgtagccgccatcttctttcttgcctcagatgctcatctaattgcagttaataattaattgctgcattcttatctcttttttagcgtggcctttcttcttttcttctctggtcttcaataactgattttttttcttcttttactttggatttctagagagtcatcagtgagaggagttaggcgtgatgacatcagcttttgtgtataggtactaccgaagaatttatgtcacttcaccggaagactgctgctgatcttgctagcttatgcttgagatggaatactctgctttcgcacttggatttttttatttctctcactccacaatggcggcgaatcctgcatcaaattgacttatgctatgctattctattctaaccagattatgtgctctacattgtcccagattaacttattgtactcgatatttttaatcagattgtgtgttctatagtgttccagattaacttatattctaatcagattgtgtgctc
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| CDS seq | atgtcccggccaacccaacaccaccccactgccgccgccaccgccgtcatcctcctcttacttgcagtatccccggcgccgtccggcgcggatccggacgacgagcggtgcctgtcgagcctccagcaatctttgtccggcctccgcaactggagcaaggcctccttctccgccccctgcgagggcttcatctcccacctccagggcgtcacctgcaacaacggccgcgtctacaagctctccctcccgggcctctccctcgccggcaccatcccgccggacctctccaactgcaccaacctccagtcgctcgacctctcctccaacgcgctctccggcgccatccccccggagctctccggcctgctcaacctcgccgtgctcaacctctccgccaaccgcctctccggcgccatcccaagggacctcgcccgctgcgcatacctcaacgtcatagatctccacgccaaccagctcaccggcagcatccccgacgagctcggcctcctcgtccgcctctccaccttcgacgtctcctacaaccgcctctccggtcccatcccggtgctcctcgccaaccgctccgggacgacggggaggttcaatgccacctccttcgtcgggaacaaggacctgtacggctacccgctgccgcccatgcgggggcacgccctctccgtcctcgccatagtcggcatcggcctcggcagcggcctgctcagcctcgtcctcagcttctccgccgtctgcctctggctacgcgccaccgaccgcacggccaccatgcccggcgaggagggcaagatctcccacctcatgcccgactactga
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| Protein seq | MSRPTQHHPTAAATAVILLLLAVSPAPSGADPDDERCLSSLQQSLSGLRNWSKASFSAPCEGFISHLQGVTCNNGRVYKLSLPGLSLAGTIPPDLSNCTNLQSLDLSSNALSGAIPPELSGLLNLAVLNLSANRLSGAIPRDLARCAYLNVIDLHANQLTGSIPDELGLLVRLSTFDVSYNRLSGPIPVLLANRSGTTGRFNATSFVGNKDLYGYPLPPMRGHALSVLAIVGIGLGSGLLSLVLSFSAVCLWLRATDRTATMPGEEGKISHLMPDY |
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| Function | Receptor-like protein 44 [UniProtKB/Swiss-Prot:Q9M2Y3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_09g0001540 | OsNaBo_09g0001540.01 | Chr09 | 2357067 | 2359455 | + | NAM | ||
| CDS seq | atgtcccggccaacccaacaccaccccactgccgccgccaccgccgtcatcctcctcttacttgcagtatccccggcgccgtccggcgcggatccggacgacgagcggtgcctgtcgagcctccagcaatctttgtccggcctccgcaactggagcaaggcctccttctccgccccctgcgagggcttcatctcccacctccagggcgtcacctgcaacaacggccgcgtctacaagctctccctcccgggcctctccctcgccggcaccatcccgccggacctctccaactgcaccaacctccagtcgctcgacctctcctccaacgcgctctccggcgccatccccccggagctctccggcctgctcaacctcgccgtgctcaacctctccgccaaccgcctctccggcgccatcccaagggacctcgcccgctgcgcatacctcaacgtcatagatctccacgccaaccagctcaccggcagcatccccgacgagctcggcctcctcgtccgcctctccaccttcgacgtctcctacaaccgcctctccggtcccatcccggtgctcctcgccaaccgctccgggacgacggggaggttcaatgccacctccttcgtcgggaacaaggacctgtacggctacccgctgccgcccatgcgggggcacgccctctccgtcctcgccatagtcggcatcggcctcggcagcggcctgctcagcctcgtcctcagcttctccgccgtctgcctctggctacgcgccaccgaccgcacggccaccatgcccggcgaggagggcaagatctcccacctcatgcccgactactga
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| Protein seq | MSRPTQHHPTAAATAVILLLLAVSPAPSGADPDDERCLSSLQQSLSGLRNWSKASFSAPCEGFISHLQGVTCNNGRVYKLSLPGLSLAGTIPPDLSNCTNLQSLDLSSNALSGAIPPELSGLLNLAVLNLSANRLSGAIPRDLARCAYLNVIDLHANQLTGSIPDELGLLVRLSTFDVSYNRLSGPIPVLLANRSGTTGRFNATSFVGNKDLYGYPLPPMRGHALSVLAIVGIGLGSGLLSLVLSFSAVCLWLRATDRTATMPGEEGKISHLMPDY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_09g0001540 | OsNaBo_09g0001540.02 | Chr09 | 2358047 | 2359201 | + | IsoSeq | ||
| CDS seq | aatctgcagtcccgaagcgaagttcaatccatccccaaatgtcccggccaacccaacaccaccccactgccgccgccaccgccgtcatcctcctcttacttgcagtatccccggcgccgtccggcgcggatccggacgacgagcggtgcctgtcgagcctccagcaatctttgtccggcctccgcaactggagcaaggcctccttctccgccccctgcgagggcttcatctcccacctccagggcgtcacctgcaacaacggccgcgtctacaagctctccctcccgggcctctccctcgccggcaccatcccgccggacctctccaactgcaccaacctccagtcgctcgacctctcctccaacgcgctctccggcgccatccccccggagctctccggcctgctcaacctcgccgtgctcaacctctccgccaaccgcctctccggcgccatcccaagggacctcgcccgctgcgcatacctcaacg
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| Protein seq | NLQSRSEVQSIPKCPGQPNTTPLPPPPPSSSSYLQYPRRRPARIRTTSGACRASSNLCPASATGARPPSPPPARASSPTSRASPATTAASTSSPSRASPSPAPSRRTSPTAPTSSRSTSPPTRSPAPSPRSSPACSTSPCSTSPPTASPAPSQGTSPAAHTST |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.881588 | 20.727991 | 9.431847 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0131200 | RBH | 1.225249 | 0.000000 | 3.081787 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g04490 | RBH | 0.762482 | 0.643500 | 0.448036 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0131200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0001480 | RBH | 0.502495 | 3.484902 | 3.498647 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0001450 | RBH | 0.088050 | 4.027118 | 2.012209 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0001480 | RBH | 1.667278 | 12.002838 | 6.352591 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0001360 | RBH | 0.145143 | 0.543291 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0001540 | RBH | 2.235951 | 17.155210 | 7.250939 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0023800 | SBH | 0.168601 | 0 | 0.0065025 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0001530 | RBH | 0.252179 | 0.788935 | 0.306833 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0045900 | RBH | 0.7410325 | 7.45473 | 2.0304305 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0001480 | RBH | 0.174687 | 0.041871 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0001500 | RBH | 0.650038 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0001590 | RBH | 2.423595 | 21.653791 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0001480 | RBH | 0.727224 | 0.0 | 0.611246 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0001510 | RBH | 0.335496 | 5.426157 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G001560 | RBH | 0.320185 | 1.816394 | 2.024416 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0004260 | SBH | 0.000000 | 0.353235 | 0.384476 |
