Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_08g0024860 | OGI:08079350 | 14/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr08:29414820-29420278 | ||||||||
| Gene Symbol | CYP71, OsCYP71, OsWD40-164, OsCYP-22, OsCYP71a, OsCYP71b | ||||||||||
| DNA seq | GCCGGAGCAGAAGGTCTCGAGGAGTCGAGACTTCTCTCCCCCAAATCCCCAGAACCCTAGCGGAGCTCCACCTCGAGATGGCGACGGCGAGCGATGCGCCGGCGAGCTCCACGATAACGACCGCCACGGACGACGCCGAGGTGGAGCGCGACCAGGGCAACGGCAATGGCGCCGTGTCAGCCGCACCCGCCGCCGTGGGGAAGGAGGCGGCGGCTGAGGAGGAGGAGATGATCGGCCccggctcccgtgccgccgcggccgaggaagaagcgcccgctccagttcgagcaggccttcctcgacgccctgccctccgcggccatgtgagtgttctcctcgccgtttcaggttcggatttggtagggggtgcgtcggctgggaggctgacggccgtggcttggttttgcaggtacgagaagagctatatgcatcgggatgtcgtcacccacgtcgccgtctctcctgctgactacttcatcaccgggagcgcagatggtaatctctcgcgctcacgtctctgcatcgtaccgtatttcagtgtgcgatactagtggtttgtgcctttgtggtagtttgttagcttgtggcagcatgtgttagatttcggatggtatcttgtggaaatgtcaagcccttctacgggcttgatagtccttcactgaaccataatcacgggcttgatagacttgcgtaatagtattggttgaaaaacttttagatctatggattgatcaaatcctgtggtatgattcaataataagctgattcattttcatgtaatgggagcttaattaccatccttttctcctctctacccaggacatttgaaattttggaagaagaaaccagctgggatcgaatttgctaaacattttcgatctcatctcagtcccattgaaggcctagctgtgagtgttcagattcttatattgacttCcctaatccagggaaaacatttgcattcgcaatatatattagtctaTttatcttgctagttgctactcttagtcacagctcctgcctatggaactatgaacaacctcaaattatagcgtgattcagtaatgcaggtgagtgttgatggcctactttgctgcacgatctccagcgatcggtctgtcaagatatatgacgttgtgaattatgacatgatgttcatgatgcgTCtcccattcgttccgggtgcaattgagtgggtttatcgacaaggagatgttaaaccaaaactcgctgttagtgatcgtaatacaccttttgttcacatatatgatactcattctggttcaaacgatcccatcatctccaaagaggtaatctgttgttgctttctgtgtgTCGAtgtgtatttcttgtgaattaaagtaactaaatgattcttactgcatgagctgcctctttatgcagattcatgctggcccagtaaaggttatgAaatataaccatgttcacgatgttgtgatatctgctgatgccaaaggactcttggaatactggtctccgtctaccctcaaatttccagaagacgcgtatgttgtttCtctcttggagttattttcaacgtttgtgtagcttgtggttttgtcttcccaaaacattgcactgaaccaccaagtacttgagccatgattacacctaccatttccttttctgttaagtctgcagcttgaacaatcctaggtgctaattaatcaacgaaccagctttttttaaaaaaagttaggtactattatgtttggtgaagatgcacttaacttaaaatcttttctgattcacttttgtttcttataataacatattatcctactttagtaTttatggattgttttttcatttcacctgtcactctggcagtgtataagctctgggttggttccttttgtaatagcTAtatttataTGtgctaacagctgTtctgtccctcttggtgaatgcatcaatccatcatcttatcaatgcatattgcctttgttttttgtgcagggtgaactttcgtttaaaaacagacacaaatctatttgaaatcgcaaaatgcaagactagcgtgtctgctattgaggtacttctTCtatttgattctcaagttatttgcatttgttgcttcattgttgatagagctacaggattaCTctgataaacgagcttgtgttgtccagatgagcaatgacggcactcaatttgttgttacatcccctgatcgtaggatacgggtattttggttcaaaactgggaaactaagacgtgtatatgatgagtcccttgaggtaagaaattccatctgtacaatgcatggtacagataaatatgttctgttataatccccaactgaatgctgtcaattataggtggcacaagatctgcagaaaagtgatatcccgatgtatcgtcttgatgctattgattttgggcgaagaatggctgttgagaaggaaatagaaaagaccgaaaatgttccacagcctaatgctgtatttgatgagagcagcaattttcttatttatgctacccttttgggcataaaggtatgctatttttttactgcacatcttttcttttatgtagtatgtgtttgatatcattatatgtacttcagttatttatataattattttttatgttcggaatgataaatgttgctcaagaaaatatttgtccttgtggaattccatcttatggatcagctgctagttaaacagcatgttttgtattagctttctagcagcttgttttgtattcattatgctcctatctagctgttgagttcatgtAaatatctggcatgttgctattgttgaacatatttctgtatgattaattctgatttcccataaatatgcagattataaatttgcacacaaataaggtttcaagaatcctGgggaaggtagaaaacaatgaacgttttctgaggattgctctataccaaggtgataaagggaataagaaggttagaaaaattccttcagtagctgccaatgtcaatgacagcaaggagcctttatctgacccaacgctgctatgctgtgccttcaagaagcatcgaATatatctctttaggtacatcaattcaatgatctttggataggtcatattggctgattccgcatgctgcttctgtagactcctttctctccagatggtatttcttaaattttaatatcctgcttctcaatcctcttttttcattatacagtcgtagagaacctgaggagcctgaagacgcaaccaagggtagggatgttttcaatgaaaaacccccaccggaagagcttttggctgtatcagatttagggaagactgctacaacatCActccctgataatttggtatgttttctcaatcatttctaaaaatggtgatttgctactattgattttatggaaatttgatatcttggtgggatagtctttgaacatttttcctttttaggtcgcatttatttacatgagtatttcctatttcaggtgatgcatacttctatgggtgatattcacttgagattatatccagaagagtgtccaaaaactgtggagaatttcactacccattgccggaatggttattatgataatctcatatttcatcgtgtgattaaaggctttatgattcagactggagaccctttgggggatggcactggtgggcaatcaatctggggaagggagttcgaagatgaatttcacaaaaggtatataagttgtatgccttttcctgtttttcTtttctcatttgcagaaaacaatgcagTttttcatcttatgtaccgtttagatgacagatgtctatgcaaggtccaggaaagatatctgtatagtcatgtaaattctgcatgcaccatgcttattgttgttgaagagaacacaatccatatgaatgatcctatttgaatatgcttatagtgacaactgacagctatggcggctatcttgcagcttgagacatgataggccttttaCTctttcaatggccaatgctggaccaaataccaatgggtcccaattctttatcacaactgtggcaactccatggctagacaacAaacacacagtgtttggtagagttgtgaaagggatggatgttgttcaggtaccagccTttttgaccaacttagtgactgtgtgtgaattttcatatcctttattgtgcttcctaatacgttttgttttaaacttaaaagcaaatcgagaaggtcaagaccgacaagaatgacaaaccatatcaggatgtgaagatcttgaacgttacagttccaaagacataagctcaaacaattggtcagtttttctgctcttgataccataatctaacctcataattcattttgttttggggattgtcttgaacaagtgactttgcttggtgttttcctacaaaatacatacaatgcaaactaatccttaactggcacagatgtcttgtgaacattaatttttttaaattgttcccttttctaaagttacctactacctccatccacaaatataagcatttctagcatttgaaatttgtacatttctggagtactactttcccaatccaaccaccgctgcatttattgctcacttagttgtatttctaggcatggtattttccctatcaagtagagtcccaggggcatcaaattaatttcacctaaaccttaTtttctgttaaaatcctagaagtgattatatttgtggatggaaagaatatagtacatacattaagataatactgccagttgcaacaacattaagaatatagcctgctttacttatgtggttatcaaagctaatttcataatggtttgttgggttagacctaaatactTCtaaatttactttaggaggtcatctttgctagacaacctgtaggaaaaccaagcatccggtgaccagtggtgctctttattattaccttgtgttatcccctgtttgccatgggattgtTCTCtctctctctctctctctctctctctctctttcatgtggactgtatgaagaacggttccatttctttatcaccagtttcatgttgactgtatagagaacggttccAtttcttgtatcaccagtgctctcatgtggtcatttcgtgtgccttctgcaggtttgacattgtacgcatgaggttcttccaccctttgcaagcctgtgaaagacaaatgttctgaactttatgTGCtgctgtggtgcatcgagttggtccttcaaacctcaacccagaggcagcaccatattattagaaagcactgcctttgatgaggtatgtgttccgagttttaactagctttcccatccataacccaagggcaatgggactgtaacatttttgctgtacacgggattggtattgcaatttaacaatggaaaaaatgtaacgagccagttagatgaggatacatggacgatttttccatgcatgggtgtaagggcgtaagttttattttgactagccactgaatgctgataccaattagactg
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| CDS seq | ATGGCGACGGCGAGCGATGCGCCGGCGAGCTCCACGATAACGACCGCCACGGACGACGCCGAGGTGGAGCGCGACCAGGGCAACGGCAATGGCGCCGTGTCAGCCGCACCCGCCGCCGTGGGGAAGGAGGCGGCGGCTGAGGAGGAGGAGATGATCGGCCccggctcccgtgccgccgcggccgaggaagaagcgcccgctccagttcgagcaggccttcctcgacgccctgccctccgcggccatgtgagtgttctcctcgccgtttcaggttcggatttggtagggggtgcgtcggctgggaggctgacggccgtggcttggttttgcaggtacgagaagagctatatgcatcgggatgtcgtcacccacgtcgccgtctctcctgctgactacttcatcaccgggagcgcagatggacatttgaaattttggaagaagaaaccagctgggatcgaatttgctaaacattttcgatctcatctcagtcccattgaaggcctagctcgtgattcagtaatgcaggtgagtgttgatggcctactttgctgcacgatctccagcgatcggtctgtcaagatatatgacgttgtgaattatgacatgatgttcatgatgcgTCtcccattcgttccgggtgcaattgagtgggtttatcgacaaggagatgttaaaccaaaactcgctgttagtgatcgtaatacaccttttgttcacatatatgatactcattctggttcaaacgatcccatcatctccaaagagattcatgctggcccagtaaaggttatgAaatataaccatgttcacgatgttgtgatatctgctgatgccaaaggactcttggaatactggtctccgtctaccctcaaatttccagaagacgcggtgaactttcgtttaaaaacagacacaaatctatttgaaatcgcaaaatgcaagactagcgtgtctgctattgagatgagcaatgacggcactcaatttgttgttacatcccctgatcgtaggatacgggtattttggttcaaaactgggaaactaagacgtgtatatgatgagtcccttgaggtaagaaattccatctgtacaatgcatggtacagataaatatgttctgttataa
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| Protein seq | MATASDAPASSTITTATDDAEVERDQGNGNGAVSAAPAAVGKEAAAEEEEMIGPGSRAAAAEEEAPAPVRAGLPRRPALRGHVSVLLAVSGSDLVGGASAGRLTAVAWFCRYEKSYMHRDVVTHVAVSPADYFITGSADGHLKFWKKKPAGIEFAKHFRSHLSPIEGLARDSVMQVSVDGLLCCTISSDRSVKIYDVVNYDMMFMMRLPFVPGAIEWVYRQGDVKPKLAVSDRNTPFVHIYDTHSGSNDPIISKEIHAGPVKVMKYNHVHDVVISADAKGLLEYWSPSTLKFPEDAVNFRLKTDTNLFEIAKCKTSVSAIEMSNDGTQFVVTSPDRRIRVFWFKTGKLRRVYDESLEVRNSICTMHGTDKYVLL |
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| Function | Peptidyl-prolyl cis-trans isomerase CYP71 [UniProtKB/Swiss-Prot:Q8W4D0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_08g0024860 | OsNaBo_08g0024860.05 | Chr08 | 29414897 | 29417134 | + | NAM | ||
| CDS seq | ATGGCGACGGCGAGCGATGCGCCGGCGAGCTCCACGATAACGACCGCCACGGACGACGCCGAGGTGGAGCGCGACCAGGGCAACGGCAATGGCGCCGTGTCAGCCGCACCCGCCGCCGTGGGGAAGGAGGCGGCGGCTGAGGAGGAGGAGATGATCGGCCccggctcccgtgccgccgcggccgaggaagaagcgcccgctccagttcgagcaggccttcctcgacgccctgccctccgcggccatgtgagtgttctcctcgccgtttcaggttcggatttggtagggggtgcgtcggctgggaggctgacggccgtggcttggttttgcaggtacgagaagagctatatgcatcgggatgtcgtcacccacgtcgccgtctctcctgctgactacttcatcaccgggagcgcagatggacatttgaaattttggaagaagaaaccagctgggatcgaatttgctaaacattttcgatctcatctcagtcccattgaaggcctagctcgtgattcagtaatgcaggtgagtgttgatggcctactttgctgcacgatctccagcgatcggtctgtcaagatatatgacgttgtgaattatgacatgatgttcatgatgcgTCtcccattcgttccgggtgcaattgagtgggtttatcgacaaggagatgttaaaccaaaactcgctgttagtgatcgtaatacaccttttgttcacatatatgatactcattctggttcaaacgatcccatcatctccaaagagattcatgctggcccagtaaaggttatgAaatataaccatgttcacgatgttgtgatatctgctgatgccaaaggactcttggaatactggtctccgtctaccctcaaatttccagaagacgcggtgaactttcgtttaaaaacagacacaaatctatttgaaatcgcaaaatgcaagactagcgtgtctgctattgagatgagcaatgacggcactcaatttgttgttacatcccctgatcgtaggatacgggtattttggttcaaaactgggaaactaagacgtgtatatgatgagtcccttgaggtaagaaattccatctgtacaatgcatggtacagataaatatgttctgttataa
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| Protein seq | MATASDAPASSTITTATDDAEVERDQGNGNGAVSAAPAAVGKEAAAEEEEMIGPGSRAAAAEEEAPAPVRAGLPRRPALRGHVSVLLAVSGSDLVGGASAGRLTAVAWFCRYEKSYMHRDVVTHVAVSPADYFITGSADGHLKFWKKKPAGIEFAKHFRSHLSPIEGLARDSVMQVSVDGLLCCTISSDRSVKIYDVVNYDMMFMMRLPFVPGAIEWVYRQGDVKPKLAVSDRNTPFVHIYDTHSGSNDPIISKEIHAGPVKVMKYNHVHDVVISADAKGLLEYWSPSTLKFPEDAVNFRLKTDTNLFEIAKCKTSVSAIEMSNDGTQFVVTSPDRRIRVFWFKTGKLRRVYDESLEVRNSICTMHGTDKYVLL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_08g0024860 | OsNaBo_08g0024860.03 | Chr08 | 29414897 | 29420278 | + | NAM | ||
| CDS seq | ATGGCGACGGCGAGCGATGCGCCGGCGAGCTCCACGATAACGACCGCCACGGACGACGCCGAGGTGGAGCGCGACCAGGGCAACGGCAATGGCGCCGTGTCAGCCGCACCCGCCGCCGTGGGGAAGGAGGCGGCGGCTGAGGAGGAGGAGATGATCGGCCccggctcccgtgccgccgcggccgaggaagaagcgcccgctccagttcgagcaggccttcctcgacgccctgccctccgcggccatgtgagtgttctcctcgccgtttcaggttcggatttggtagggggtgcgtcggctgggaggctgacggccgtggcttggttttgcaggtacgagaagagctatatgcatcgggatgtcgtcacccacgtcgccgtctctcctgctgactacttcatcaccgggagcgcagatggacatttgaaattttggaagaagaaaccagctgggatcgaatttgctaaacattttcgatctcatctcagtcccattgaaggcctagctgtgagtgttgatggcctactttgctgcacgatctccagcgatcggtctgtcaagatatatgacgttgtgaattatgacatgatgttcatgatgcgTCtcccattcgttccgggtgcaattgagtgggtttatcgacaaggagatgttaaaccaaaactcgctgttagtgatcgtaatacaccttttgttcacatatatgatactcattctggttcaaacgatcccatcatctccaaagagattcatgctggcccagtaaaggttatgAaatataaccatgttcacgatgttgtgatatctgctgatgccaaaggactcttggaatactggtctccgtctaccctcaaatttccagaagacgcggtgaactttcgtttaaaaacagacacaaatctatttgaaatcgcaaaatgcaagactagcgtgtctgctattgaggtacttctTCtatttgattctcaagttatttgcatttgttgcttcattgttgatagagctacaggattaCTctga
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| Protein seq | MATASDAPASSTITTATDDAEVERDQGNGNGAVSAAPAAVGKEAAAEEEEMIGPGSRAAAAEEEAPAPVRAGLPRRPALRGHVSVLLAVSGSDLVGGASAGRLTAVAWFCRYEKSYMHRDVVTHVAVSPADYFITGSADGHLKFWKKKPAGIEFAKHFRSHLSPIEGLAVSVDGLLCCTISSDRSVKIYDVVNYDMMFMMRLPFVPGAIEWVYRQGDVKPKLAVSDRNTPFVHIYDTHSGSNDPIISKEIHAGPVKVMKYNHVHDVVISADAKGLLEYWSPSTLKFPEDAVNFRLKTDTNLFEIAKCKTSVSAIEVLLLFDSQVICICCFIVDRATGLL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_08g0024860 | OsNaBo_08g0024860.04 | Chr08 | 29414897 | 29417134 | + | NAM | ||
| CDS seq | ATGGCGACGGCGAGCGATGCGCCGGCGAGCTCCACGATAACGACCGCCACGGACGACGCCGAGGTGGAGCGCGACCAGGGCAACGGCAATGGCGCCGTGTCAGCCGCACCCGCCGCCGTGGGGAAGGAGGCGGCGGCTGAGGAGGAGGAGATGATCGGCCccggctcccgtgccgccgcggccgaggaagaagcgcccgctccagttcgagcaggccttcctcgacgccctgccctccgcggccatgtgagtgttctcctcgccgtttcaggttcggatttggtagggggtgcgtcggctgggaggctgacggccgtggcttggttttgcaggtacgagaagagctatatgcatcgggatgtcgtcacccacgtcgccgtctctcctgctgactacttcatcaccgggagcgcagatggacatttgaaattttggaagaagaaaccagctgggatcgaatttgctaaacattttcgatctcatctcagtcccattgaaggcctagctgtgagtgttgatggcctactttgctgcacgatctccagcgatcggtctgtcaagatatatgacgttgtgaattatgacatgatgttcatgatgcgTCtcccattcgttccgggtgcaattgagtgggtttatcgacaaggagatgttaaaccaaaactcgctgttagtgatcgtaatacaccttttgttcacatatatgatactcattctggttcaaacgatcccatcatctccaaagagattcatgctggcccagtaaaggttatgAaatataaccatgttcacgatgttgtgatatctgctgatgccaaaggactcttggaatactggtctccgtctaccctcaaatttccagaagacgcggtgaactttcgtttaaaaacagacacaaatctatttgaaatcgcaaaatgcaagactagcgtgtctgctattgagatgagcaatgacggcactcaatttgttgttacatcccctgatcgtaggatacgggtattttggttcaaaactgggaaactaagacgtgtatatgatgagtcccttgaggtaagaaattccatctgtacaatgcatggtacagataaatatgttctgttataa
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| Protein seq | MATASDAPASSTITTATDDAEVERDQGNGNGAVSAAPAAVGKEAAAEEEEMIGPGSRAAAAEEEAPAPVRAGLPRRPALRGHVSVLLAVSGSDLVGGASAGRLTAVAWFCRYEKSYMHRDVVTHVAVSPADYFITGSADGHLKFWKKKPAGIEFAKHFRSHLSPIEGLAVSVDGLLCCTISSDRSVKIYDVVNYDMMFMMRLPFVPGAIEWVYRQGDVKPKLAVSDRNTPFVHIYDTHSGSNDPIISKEIHAGPVKVMKYNHVHDVVISADAKGLLEYWSPSTLKFPEDAVNFRLKTDTNLFEIAKCKTSVSAIEMSNDGTQFVVTSPDRRIRVFWFKTGKLRRVYDESLEVRNSICTMHGTDKYVLL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_08g0024860 | OsNaBo_08g0024860.01 | Chr08 | 29414820 | 29420278 | + | NAM | ||
| CDS seq | atggtacagataaatatgttctgttataatccccaactgaatatgcagattataaatttgcacacaaataaggtttcaagaatcctGgggaaggtagaaaacaatgaacgttttctgaggattgctctataccaaggtgataaagggaataagaaggttagaaaaattccttcagtagctgccaatgtcaatgacagcaaggagcctttatctgacccaacgctgctatgctgtgccttcaagaagcatcgaATatatctctttagtcgtagagaacctgaggagcctgaagacgcaaccaagggtagggatgttttcaatgaaaaacccccaccggaagagcttttggctgtatcagatttagggaagactgctacaacatCActccctgataatttggtgatgcatacttctatgggtgatattcacttgagattatatccagaagagtgtccaaaaactgtggagaatttcactacccattgccggaatggttattatgataatctcatatttcatcgtgtgattaaaggctttatgattcagactggagaccctttgggggatggcactggtgggcaatcaatctggggaagggagttcgaagatgaatttcacaaaagcttgagacatgataggccttttaCTctttcaatggccaatgctggaccaaataccaatgggtcccaattctttatcacaactgtggcaactccatggctagacaacAaacacacagtgtttggtagagttgtgaaagggatggatgttgttcagcaaatcgagaaggtcaagaccgacaagaatgacaaaccatatcaggatgtgaagatcttgaacgttacagttccaaagacataa
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| Protein seq | MVQINMFCYNPQLNMQIINLHTNKVSRILGKVENNERFLRIALYQGDKGNKKVRKIPSVAANVNDSKEPLSDPTLLCCAFKKHRIYLFSRREPEEPEDATKGRDVFNEKPPPEELLAVSDLGKTATTSLPDNLVMHTSMGDIHLRLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQQIEKVKTDKNDKPYQDVKILNVTVPKT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_08g0024860 | OsNaBo_08g0024860.02 | Chr08 | 29414897 | 29420278 | + | NAM | ||
| CDS seq | ATGGCGACGGCGAGCGATGCGCCGGCGAGCTCCACGATAACGACCGCCACGGACGACGCCGAGGTGGAGCGCGACCAGGGCAACGGCAATGGCGCCGTGTCAGCCGCACCCGCCGCCGTGGGGAAGGAGGCGGCGGCTGAGGAGGAGGAGATGATCGGCCccggctcccgtgccgccgcggccgaggaagaagcgcccgctccagttcgagcaggccttcctcgacgccctgccctccgcggccatgtgagtgttctcctcgccgtttcaggttcggatttggtagggggtgcgtcggctgggaggctgacggccgtggcttggttttgcaggtacgagaagagctatatgcatcgggatgtcgtcacccacgtcgccgtctctcctgctgactacttcatcaccgggagcgcagatggacatttgaaattttggaagaagaaaccagctgggatcgaatttgctaaacattttcgatctcatctcagtcccattgaaggcctagctcgtgattcagtaatgcaggtgagtgttgatggcctactttgctgcacgatctccagcgatcggtctgtcaagatatatgacgttgtgaattatgacatgatgttcatgatgcgTCtcccattcgttccgggtgcaattgagtgggtttatcgacaaggagatgttaaaccaaaactcgctgttagtgatcgtaatacaccttttgttcacatatatgatactcattctggttcaaacgatcccatcatctccaaagagattcatgctggcccagtaaaggttatgAaatataaccatgttcacgatgttgtgatatctgctgatgccaaaggactcttggaatactggtctccgtctaccctcaaatttccagaagacgcggtgaactttcgtttaaaaacagacacaaatctatttgaaatcgcaaaatgcaagactagcgtgtctgctattgaggtacttctTCtatttgattctcaagttatttgcatttgttgcttcattgttgatagagctacaggattaCTctga
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| Protein seq | MATASDAPASSTITTATDDAEVERDQGNGNGAVSAAPAAVGKEAAAEEEEMIGPGSRAAAAEEEAPAPVRAGLPRRPALRGHVSVLLAVSGSDLVGGASAGRLTAVAWFCRYEKSYMHRDVVTHVAVSPADYFITGSADGHLKFWKKKPAGIEFAKHFRSHLSPIEGLARDSVMQVSVDGLLCCTISSDRSVKIYDVVNYDMMFMMRLPFVPGAIEWVYRQGDVKPKLAVSDRNTPFVHIYDTHSGSNDPIISKEIHAGPVKVMKYNHVHDVVISADAKGLLEYWSPSTLKFPEDAVNFRLKTDTNLFEIAKCKTSVSAIEVLLLFDSQVICICCFIVDRATGLL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_08g0024860 | OsNaBo_08g0024860.06 | Chr08 | 29414821 | 29420278 | + | IsoSeq | ||
| CDS seq | CGGAGCAGAAGGTCTCGAGGAGTCGAGACTTCTCTCCCCCAAATCCCCAGAACCCTAGCGGAGCTCCACCTCGAGATGGCGACGGCGAGCGATGCGCCGGCGAGCTCCACGATAACGACCGCCACGGACGACGCCGAGGTGGAGCGCGACCAGGGCAACGGCAATGGCGCCGTGTCAGCCGCACCCGCCGCCGTGGGGAAGGAGGCGGCGGCTGAGGAGGAGGAGATGATCGGCCccggctcccgtgccgccgcggccgaggaagaagcgcccgctccagttcgagcaggccttcctcgacgccctgccctccgcggccatgtacgagaagagctatatgcatcgggatgtcgtcacccacgtcgccgtctctcc
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| Protein seq | RSRRSRGVETSLPQIPRTLAELHLEMATASDAPASSTITTATDDAEVERDQGNGNGAVSAAPAAVGKEAAAEEEEMIGPGSRAAAAEEEAPAPVRAGLPRRPALRGHVREELYASGCRHPRRRLS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr08 | 29415727 | 29415890 | + | OsNaBo_08g0024860.05,OsNaBo_08g0024860.02 | OsNaBo_08g0024860.04,OsNaBo_08g0024860.01,OsNaBo_08g0024860.03,OsNaBo_08g0024860.05,OsNaBo_08g0024860.06,OsNaBo_08g0024860.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.071103 | 13.100424 | 9.372408 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0557500 | RBH | 2.277185 | 1.742899 | 6.145365 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g44330 | RBH | 1.247257 | 1.104933 | 1.180276 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0557500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0025220 | RBH | 0.869919 | 7.598327 | 7.555853 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0024990 | RBH | 0.209979 | 3.081420 | 3.392607 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0024980 | RBH | 1.521633 | 9.048684 | 13.309601 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0025230 | RBH | 0.189850 | 0.444271 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0025000 | RBH | 7.150554 | 18.313187 | 12.696306 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0444700 | SBH | 6.4431135 | 20.0012645 | 63.9356785 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0024780 | RBH | 0.340299 | 0.893853 | 1.044984 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0463600 | SBH | 10.02311 | 24.263284 | 20.011625 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0024200 | RBH | 0.181746 | 0.074953 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0024550 | RBH | 0.149680 | 25.159086 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0024350 | RBH | 3.416933 | 18.841463 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0025270 | RBH | 0.560800 | 1.195583 | 1.347795 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0024540 | RBH | 0.105562 | 12.024467 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G024700 | RBH | 0.885676 | 4.477429 | 2.651177 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
