Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_08g0023700 | OGI:08077320 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr08:28672830-28674858 | ||||||||
| Gene Symbol | PIC27 | ||||||||||
| DNA seq | tcacttcgcttgatttccatgctttggcctctgctctttcttcccgtctgttcttctcattcccttgatcaatgtggcatcgcctgcacgaccacggttattgctgacagtcacagccttcaccttatcaggtaagcctttctgcttgccatccatgacagtaactggtaggcatgactgccttcttatcctgccaatttctactgtgtcatgcacaccaaatgctagatctctacgccatgctttcgctgtcaatggcgttgtgatcagattcttcggtgcacagtaggggagctcagggttcgtcactctcttgagtccatttgtactgttaccttggcttgcatagcatctttcagagtgtttcttggttgcattgcaagttgcggtaggagctgtaggtgtaattgcagcaactaccttctgcttcctgctcgttatggctgcagaagttgatctcctttcaatttggttcttctcattggagatggattgtgtggacactctgaatatgctcttctctgatgaagagttaggtgcaggaaacattgatcttgccgatgttttcgttgcctctgtctttcctgatagctgtaattgataaaatcaagatcaagagaagctctctgatgaagagacaaaatctagaaatgcagattgcaattgagcagaaaatccacttaggagctctaaactgtagcattcagtaaaaagaaaatcattcagtataatttatggagcaaattagtatataccctggaagctgaaggtttaacttgctgatgaattggtagctcctggaaaaccatttgagatgagttggtttccatctctatggaaggaaacagtggtgtagctggaggcgtcttcagcctgaaacaagctgttcttctaaaaaaacagttccaacaacacaagtatatgatctagtcatctggatgaattgaattccatcctaccagtcgtagtcatgcttctcgtccactgctatgaggaaatctgtcttccctgacggagctttgctcgtgcggccacctatcacagatacaaattcaaaagaacacaaacactgcagtgaggtcatccatctttgaagcaatttgagtgggattttcaactgcaaattttcatattgctaatcaaatgttcatattgctaatcaagagattgtgaatatgtccataacatttctgacgacacatataggaaaaatagaaacgcaagagccgaagatgtcaccttggatagcatcaaactcaacggattgcatgggttccaggaggttgatgtccctatctttttcacgcttgtccatctccctgaagaaaactacgctctcgtctttgtctttatgtattgcagatggggcgttaggcttgcgcatcccagaaaacctcctgatgctgttcatcttcaggaaccagagagattgatttactgcacggaaaaaaaaaagaatgcaaagatcagagcatggaagaagtcacaaacattacatgaatattactactactactactactctaaaggatccaaattttccggcaactccaaagcaaccgcttgaatcaattgcggattgggtatgctcttttttttttcattcaaaaaagacccttttacttagtttttcagagcgcgggccttaacttaagaactcggaacgtaaaaccgtttggtgagggacctaaaagtattatatactaagaaaaggtcctttctgcaaaaatccacctgcttcatcctagccgtacgctcaagccaatcggacggcacgccagccagcggcttgcgcggacgcggaaggagacgcgctcgcgggcgacgtggatagctccgcatgcgaacacgccacccccgaatagctctcaactcaccaaccgattcagggcaggttttaatttaaccgatttgggtcacatactggaaatcatggaggcctaattcatcggtgggaaccgcacggttggcccttggccgggaaacaacattgtcgcatactcgcatgggcgttttcttccactgccat
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| CDS seq | atggcagtggaagaaaacgcccatgcgataaatcaatctctctggttcctgaagatgaacagcatcaggaggttttctgggatgcgcaagcctaacgccccatctgcaatacataaagacaaagacgagagcgtagttttcttcagggagatggacaagcgtgaaaaagatagggacatcaacctcctggaacccatgcaatccgttgagtttgatgctatccaaggtggccgcacgagcaaagctccgtcagggaagacagatttcctcatagcagtggacgagaagcatgactacgactggctgaagacgcctccagctacaccactgtttccttccatagagatggaaaccaactcatctcaaatggttttccaggagctaccaattcatcagcaagttaaaccttcagcttccaggctatcaggaaagacagaggcaacgaaaacatcggcaagatcaatgtttcctgcacctaactcttcatcagagaagagcatattcagagtgtccacacaatccatctccaatgagaagaaccaaattgaaaggagatcaacttctgcagccataacgagcaggaagcagaaggtagttgctgcaattacacctacagctcctaccgcaacttgcaatgcaaccaagaaacactctgaaagatgctatgcaagccaaggtaacagtacaaatggactcaagagagtgacgaaccctgagctcccctactgtgcaccgaagaatctgatcacaacgccattgacagcgaaagcatggcgtagagatctagcatttggtgtgcatgacacagtagaaattggcaggataagaaggcagtcatgcctaccagttactgtcatggatggcaagcagaaaggcttacctgataaggtgaaggctgtgactgtcagcaataaccgtggtcgtgcaggcgatgccacattgatcaagggaatgagaagaacagacgggaagaaagagcagaggccaaagcatggaaatcaagcgaagtga
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| Protein seq | MAVEENAHAINQSLWFLKMNSIRRFSGMRKPNAPSAIHKDKDESVVFFREMDKREKDRDINLLEPMQSVEFDAIQGGRTSKAPSGKTDFLIAVDEKHDYDWLKTPPATPLFPSIEMETNSSQMVFQELPIHQQVKPSASRLSGKTEATKTSARSMFPAPNSSSEKSIFRVSTQSISNEKNQIERRSTSAAITSRKQKVVAAITPTAPTATCNATKKHSERCYASQGNSTNGLKRVTNPELPYCAPKNLITTPLTAKAWRRDLAFGVHDTVEIGRIRRQSCLPVTVMDGKQKGLPDKVKAVTVSNNRGRAGDATLIKGMRRTDGKKEQRPKHGNQAK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_08g0023700 | OsNaBo_08g0023700.01 | Chr08 | 28672830 | 28674858 | - | NAM | ||
| CDS seq | atggcagtggaagaaaacgcccatgcgataaatcaatctctctggttcctgaagatgaacagcatcaggaggttttctgggatgcgcaagcctaacgccccatctgcaatacataaagacaaagacgagagcgtagttttcttcagggagatggacaagcgtgaaaaagatagggacatcaacctcctggaacccatgcaatccgttgagtttgatgctatccaaggtggccgcacgagcaaagctccgtcagggaagacagatttcctcatagcagtggacgagaagcatgactacgactggctgaagacgcctccagctacaccactgtttccttccatagagatggaaaccaactcatctcaaatggttttccaggagctaccaattcatcagcaagttaaaccttcagcttccaggctatcaggaaagacagaggcaacgaaaacatcggcaagatcaatgtttcctgcacctaactcttcatcagagaagagcatattcagagtgtccacacaatccatctccaatgagaagaaccaaattgaaaggagatcaacttctgcagccataacgagcaggaagcagaaggtagttgctgcaattacacctacagctcctaccgcaacttgcaatgcaaccaagaaacactctgaaagatgctatgcaagccaaggtaacagtacaaatggactcaagagagtgacgaaccctgagctcccctactgtgcaccgaagaatctgatcacaacgccattgacagcgaaagcatggcgtagagatctagcatttggtgtgcatgacacagtagaaattggcaggataagaaggcagtcatgcctaccagttactgtcatggatggcaagcagaaaggcttacctgataaggtgaaggctgtgactgtcagcaataaccgtggtcgtgcaggcgatgccacattgatcaagggaatgagaagaacagacgggaagaaagagcagaggccaaagcatggaaatcaagcgaagtga
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| Protein seq | MAVEENAHAINQSLWFLKMNSIRRFSGMRKPNAPSAIHKDKDESVVFFREMDKREKDRDINLLEPMQSVEFDAIQGGRTSKAPSGKTDFLIAVDEKHDYDWLKTPPATPLFPSIEMETNSSQMVFQELPIHQQVKPSASRLSGKTEATKTSARSMFPAPNSSSEKSIFRVSTQSISNEKNQIERRSTSAAITSRKQKVVAAITPTAPTATCNATKKHSERCYASQGNSTNGLKRVTNPELPYCAPKNLITTPLTAKAWRRDLAFGVHDTVEIGRIRRQSCLPVTVMDGKQKGLPDKVKAVTVSNNRGRAGDATLIKGMRRTDGKKEQRPKHGNQAK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 2.329123 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0543000 | RBH | 0.0 | 0.000000 | 0.932370 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g42990 | RBH | 0.0 | 0.000000 | 0.243048 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0543000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0024080 | RBH | 0.0 | 0.565423 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0023880 | RBH | 0.0 | 0.0 | 0.137488 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0023870 | RBH | 0.0 | 0.0 | 0.652955 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0024210 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0023840 | RBH | 0.0 | 0.0 | 1.957296 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0431900 | RBH | 0.0815995 | 0.433191 | 0.358048 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0023710 | RBH | 0.027030 | 0.921577 | 0.042268 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0451500 | RBH | 0.0807555 | 0.1826855 | 0.5342815 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0023080 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0023450 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0023260 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0024110 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0023340 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G023540 | RBH | 0.0 | 0.0 | 0.356268 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0016950 | RBH | 0.0 | 1.493664 | 0.0 |
