Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_08g0022940 | OGI:08075470 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr08:28073651-28083383 | ||||||||
| Gene Symbol | MADS37, OsMADS37, DLN217, OsDLN217 | ||||||||||
| DNA seq | tcgccggccacacttccccctcctgtccccactccactccacggccgtgcagctgcacagcagcagcagcagcagctcgcacggcgaggagatggagagatggagatggtgccccttcttctcctcccctccacaactttccttttctttgagaatggattccctcaccaccacattattattttagctagtagtacagtactagctcttcttcttgttgttcttgttctttcttcttcccctttttaaatccattcaccaccacaaactagcttagcttagcttagctagggttcgtggtcgatcggtggaggagttggggaatggagggaggagggaggaggaggaagagggggaaggtggagctgcggcggatagaggaccggacgagccggcaggtgcgattctcgaagcggcggagcgggctgttcaagaaggcgtacgagctgtccgtgctctgcgacgcccaggtcgccctcctcgtcttctcccccgccggccgcctctacgagttcgcctcttccacctccaggtagtacatgtactccactccactgcgctcctacagttcaattccatttgtaTtttttctctatctcctcaaatctgtatatatccaggtacatagtacaatgtttctcgcggattctggagctgagtttgctgtgcatcactctgagctctagctggctataataataataataactctcgttattaattttctggtggcctgatgttaattaattagtactacacatatgttgcgtacgtatggatttgatttggaactagctgtaatagatcgctgtgcagtgttcctgtacttctgctgctcagcttaatttatagaagtagcttgctttcttcgtgtgctaagactgaatgctgagactactaattttatgtcacatttcttcaccattagtttggggatttatcagagaaatacctgcaagtgttctctcataactcctagcttagctagttcttcagcttcattcatagagatgattgctcaggttaattgcaactgcgctagctgtgataatctaccaatatggtacatgcatatacatatgttttttcgccctatagtttacttatgggttcagtgtgccaatttcgttggttttagtttaattgtatgcataaaatatacccatacattttaatctgcaaaataaggccttcttaatctacctcttgtttttacccatcttgtacccaaaaatagcgtcacatatatgtagcctttttggcactgagcatccaaaaatttatttggttagtataggctaactaactgatgtctcgggagaaacaaaaccttttgattgctgcattgaaaaataacatttttttaaaatatatttacaatgcagtaaccaagaacctttttttgttttcatttgtatgcctgtacaagttactgcttttgagtttaatttactgatttcgaattttcttcatgcagcattgatacaatttttggtcggtattgggaccttctggacacaacaattgatctcaatattgaagcaagggaatctcgggttgattgcaatatacaggtctacctgataagtattttagtaatatagcagttctttaacttatgatcatgataatatctaagcctaacattcaagttcacagctctagaatcatgtttccctttttgccaactgcgccaactgaacatcgatggtgtattatccattaaagtcttaaaactaaggagtaaaatatgaaagttttcccacaaacctatggtcatgataataattaaatctgctacttaagtccatggctctagaatctttgttccatgtgctaactgagaatcaatggtatcatccaattagcctattggactcccttgtcgctcgctggagtgacacgggaggcgaaacaccaaatctctagccttagccacacacctactactcgccttggtgttggccgtactagcagtgacacctgcccatctcttcacctttctcctataattccccttctctccctcttgttttttcccttcccacctttctttttctaggtctggatacggagacaaatcgtccacggagggctagctcctttgttggttggagatgcaacccctccatttaggggtgttggtgtggctcctcgcctagccctttgtatttatgacgacactccacctaggatcaaggtggcaaaaggtgcatgggctaaccgatggccagagcgatgacacatgtggaagctatctgataagatattcactacatgcaagggcaagtggcaggaggcggcaccccacatggatgttggccagcttgctctgtgtggaggactggctatatgaggcttaaacgtgtgtggaggcgttgcctgcaaccgacgtatgcgctaagcgttgtaactgctggatttgaggtgtctatgcttggatctagacgcgtagtggcaaacggtggtggcagggcttcttctttgcctccactagacaacgtcagtgagtgaaggtgcactaaggtctaggaactgctagatctggatctcaaatgtatctagctggtggcatggaaggtggcatgatggacgtcaatgatgggttgcaagagtttgggctgcatctcatgattgccttagtgtggtattttatgcgacaaggctcgttaggcaacaaaggatcaatctctggcacgacgatcatcaaagtttctaagtaaacgagtggtgtaccggatcgttactagataagaaagtactccctccctttcttatcataagacgattggactttttggtaagtcaaactaaacttcttaaagtttgaccaagtttatagaaaaagatagcaacatttccaacacagaataaacatactatcaatatatattcaatgttatatttagtgaaactaatttggtgttgtaaatgtcgcttcatttttatataaactatgtcaaaattaaaaaaaattgacttagaaaaaaaatcaaagcatcttataatatgaaacaaaGggagtaacaagcttgaagcaacatggaagaagaattgaagcttagtcttctagtctttccttttgtattttggtgtttctcggtcataaaacttggatctaagtattcatgtttgtaatatttggttgtgtatatccacatgtagatgtagaggctagatttatatccattatctAaaaaaacatccaattattaaaatctcaagagcatagacagagtaaaatatgaaagttttcctgaatgtcttttttttcgcattAaacaccacatataagcatgtatTAtttaccaggataagactttatgttgtagcggtcaattataaggtcaagttaggcatttactagaggcatttgcacaaaagtgacattacaatctcattttgaatgcatgaattttacataattttcatagtaattagttttagttccctcgaaaaatctttaaatttcttatattccataggaagctcaactgcttaaaaggctaattaatgcataaaagagcacacacgaagttacataccacacatgtggaatttaataagttaggtgatcctccctcatcatAaaatatttcatggtaatgtcatatactgaagacatttttcatatgcatactcaagttagatcaaacaacaacacaatggaggttaagggtctaacttatactacatgttatgtacatgtacatgtggtttggttctcccaatgttttccacaacacccaagtaaatatacttgcaaaattacacAacaaagcctcaccgaagtaattaatAattactaggtgtttttatatctccaccatccccactcgacacctcaaatatccAaatatccttcatccactaagtggacacctcaaatatcttgactctgacacatgccatgcatgccaataactaatttttttttttaggtttcatggatgatgtatatgcacacacacaccacctacaagagtgtgcctccgcaccacAaactcatcaagcagaggctaGgggtaattccatgaaccctagaaaatagttggatcatgagctactccacaatctaacaagcttatgatcAaaatagacgaaccatgactcaaaacacAatagcgatgaagaaataacccacaatagagaaatatatagagaacccgaccacaaattcccttaatgtcacttttgtgcAaaaattatcacataaccctctcatttcagacccttggactcttgacttatagaagaatctaatgctaaaggattatgagcctctgatcgtttgaacAaacacctcttgtatggcctcactccttgagcatttatacccccttgctagtattaacccAaaaaagagtaggaatagtaataggttctaagaatatagttaggaatccttttagttttttccctagtgctaatggtataacaatcagaatcttatttgttgaagtcatctttctccaaattagcaacacctttttttcttccacctagaaagtaccccaaccacgtctcacgcacatcatcacgatgagcatgtcaaagtcttgttttggtttcataggttctccacctaagagtttttagtaagtttgttaaccatagatccttacataggttcacaccaccttctagcgccactaggttgtgagtgcctcatgcatgcttgtcccatatcttcctcatccaattgttgatagttttgcctctgtctctactagaattcaagctagatcaagctgaattcatagaggaattatgaagaccacgacatggaaaattaattctatctattaattaggcatgatttagtagggttccttttatctttaggaaacatgtgtcatatctttaagaaacctgtgtcgtgtccgatcaggacttgtatcaacccgaaggtataaATatATTTATACCTGAGGCCTTTGTAAACTATCTCCACATATCAATACAATTACTGTTGACGCATCGCCACCTTTTATTTCGGTGAGTTCTTAGTTTCGAGTTGGGCTGCATCAGTTTTGATTTCCGGCGAGGAAGTATGTTCTGTCAACTTCGCTTGTATCGGCATAGCTAGAACTTTCTCGGTTAAGTCCGATATTCTATTCAAGTTGACACAAGCGTTTCCTATCTGATATATTGATTCTATCTTTAATTGCATCACCGTTTAGAGTCGTATCAGCTGCGTTCGTTTCTCCAACAAAAGTGGATGGAATTTTGGATACTCGTGGCACGTTTTTCAAACTGCTAAACGATGCGTTTCGTGCGAAAACTTTCTATATGAAAGTTGCTCTAAAATATCAGATTAATCCATTTTTCAAGTATGTAATAATTAAAACTAAATAAATCACACATTATTACCACCTCGTTTTGCGTGAAACACTTAATCTCTATCTTCATCTTCATTTGCAGGAGATTCAAACACCAGCACATTGTTGTTtttagatagatcgatgtatctatcacgtttgtgtatatctattggataaataggtttttcttattatcttcaatcctatattgtgtcggttaggttcgatctattagattgtcgctaataagttttattctactaagccaataggttttcatgcaacgtttcatcggagtctagccaatgagttatcttgttacttttttaagtgttgtatcggctcatattgaaactcgtatattcactagctaaatcttcctttatcaacttcaatctcatattgtcttagttcggtccgatctatcaagattgtttttgataaacaatggtttattaatgaattacgcatagtttagttctagccgatgacagcaaaaatctcactgtttatcttatcatttgaatctacatcgaacccatagccgattgatcgaaacctatcgatatcggttggcctcgctacactacattgacctataggcagtatcAaactaactggcatgcctagaacctgattaatcgaacctgcattggagctaagcagatctcccatgcctttgtgcaatgttgttAagggcttaaGgcggtatggtgaggtatggagacccgccaccgtcttacagctatagcgctaagccgtatggcgtggcaacgccatacactcttcctatctttgcaaattaagaaagccaGgaaggggattgtgcaaaggagtgtagataagggaggaaatcagagcactgcaaagaagcagagcaggagagagacagagtagcggatAaggagaagaaaggtgagagagcagcatagtgcagagggtgaaaaggagcacagatgaagtcaGagagagagagagcatagatgaagtaagggaaaaagggatggagcataccttgagatggagaggcgccgtgatgattagatggTGTtGtggtggagccggcgatgacgagggttgcgcacgagatggtcatagaggcaacgcctcgatgggtcgatctttggatttgggttggcgatgccgcccctagggtttccaggggcaccctctctcccttttCcctctatttctcttccactattagggcctcacgggttgtttttcgcgcccagcctagacttgtgcccagtgtgcctaggatttgctagcttgcctaaaacttcccgcgctcttccttgtagtgtgcgcctcatgcgactccgacacctcacgccacaatcgcgatgccatagtgataccctagccctaaggcggacgccatagactcgaggctgtggcagtaggatgccttggaggtcgccgaacaccatgacgccttcgcaatgccatggcgacgctatatcgacacctcaataaccatgcctttgtgtatcgcaacaaatttcatgtcaacatatatAtgtctactcaccctttgcaagtaactcgcgcaacttcgctctagcaatgataccttatagcctaagagccgaagtggtcgtgtatgtactaaattctttgtgttaatcgtgggatatactccctaaaCcttgttggtgtgacatgtactctgacaaacatctccaatgtaattgttactacttcaatgattgcatagtccttgtaatccGTgaaacccatcattgaacttctgtattatgaaacatgtggaagaaacaaccataattcaagtccattaatgacaagtacatcattcgaatcattttccaccattatttcgtatagacccctcatttgcttcAaacatggacaatcttttatcacatggcattccctgtgacatagctaacatgtttGtttgtcattgcttttgccattcataattattcctttaattcttgcttttgcttgccacacctacaataatgaatgcttaatcatcctaggataaacattttgatggcatcttcaaggattcaacttccaatagatatgcgattgcctcatcgAaaacaatggtcctcatcaaacttaataggtgtcccaccaatgagaatatttgtccacctattgcttacatgatgatggtagagatgaatccaatgtgatctatcttgttctaatttgctcatccacactaatcctctcctaggcccttcttacttttactcatttgagtaaatttaagaaaactacATatactttgacgaaactatctAaaactacatatatAagaatgtatatcacaaaattatagatttagcgccaaatttttcacgaaactatagatttgaggcattgtatcataaaactacagattttacatcaattttatcatgaaactacagcttttatAattttaaatagatgatagtgctatggatctaaactctAaaatatgtAtttattcgataacttcatcactaggtctgtagttttgtgaaatttacttggttgggctttgcttgtatgaccttccaccgtggGTatttatatcccccccccccccTtattactcctaaCcccaagcatattgtgaggaggattgcgtagagaataggatggcgacaacctactgaccagcccatatagcagttagcttgatgtcaccaaggcactcAaatgaaggcatcagacttgactttgctaagacaaacaaatgctggcaccacaccttgctcgacattgccaaGccacacTtaatgcattttcatggggcgttctcttttgtatgtggactttatgatgccattcaggatggtggttgtgtgaggtttggagaatggctgtggcatgccacccctGggggaggtgcttttgtggagatcaggtggtaccaactcgaaggtggcttggttatgacatgcgggctggtcaagtgtaaggcttttaggaaccatGggatcgatttgcttaggcatttagttgacctcagtggaaatgtgcttcatgttaacgaacatgctaaaaaaacAaaatagagaaataTttggatgatatgAgagtgaacttgttgatttgtttggctttataaaacttaaaatatgatctttcgatgctatatatagttttcgctagattctgaattagttaggaatcctttattccttAaatatgtgacctttcggtcaaaaaccatttttgcataggttctaataaactataagaaatccttttgctttccttattttcctcatcttactaGgatgagagtcactccaatattacaacatccaccaccacattaaaagtgcttctccaataggtagattttatgtgcttcTtttttttccctactgtacgtacactcaatccgttcacatattcaaggcatattatgttgaaaacAattgtatgctgtcagtttgtgttctagatgattgttttcgacattccaatttttcaggactAaatatgttttattaattaTaattggaaccacAaaatattatatatgcatttatatatgtagctgaaTtttgtcagtacttgcactttatgagataatataagcatatgcaccttcttttgcttgatcgtcctttcttctttaattcgacagcttcgtcagAaagagcgttcagatgacccggtgcctaagataaaccacattactcaatggtaacgaaaatatagctgatgagcaagttagggAatcatttgttttcatcgagtatgacataTtttatgcagttgtctgattgtccaagttattatcagtgtgttggaatcaaatgtcaacgagctgAacatcgctgagctaagaggtttggaggaagcgatgactaatgctttgacagttgttaaggtcatacattatccacTttattggtcttcatcacatcaattctagcatgtagaatgtgcctgctttaatttcgttgcaactgttatttcaaagatatttcattgcaactgttAaacgtaatacagcccacaagtttgagagaatcttaatgtttgtgtttcatgcagaacaaactgatgatgaaGgtggctagtgtgctcccccaaagcgaggtcagttaacagaaattagctaaactcaactgaaTtttgaattctgcaatcatatgcatatgccgttgtgtatcgacagttcaaacAattgatcgaactttaccctcaagctagatggtcaagctagcatgagaaagtactcagaaataaaaccacattcatacatataactgtcaagtttgatcggttaactgcttgtcccacaaacgcacgttatccaaatcctgacaaagcaagacacaggtgcaatgtgcgtacctgcgaaattgtagccaaagcatgataatgtatatgtaccagccatttcaacaacagaagttgcttgg
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| CDS seq | atggagggaggagggaggaggaggaagagggggaaggtggagctgcggcggatagaggaccggacgagccggcaggtgcgattctcgaagcggcggagcgggctgttcaagaaggcgtacgagctgtccgtgctctgcgacgcccaggtcgccctcctcgtcttctcccccgccggccgcctctacgagttcgcctcttccacctccagcattgatacaatttttggtcggtattgggaccttctggacacaacaattgatctcaatattgaagcaagggaatctcggcttcgtcagAaagagcgttcagatgacccggtgcctaagataaaccacattactcaatgtgtgttggaatcaaatgtcaacgagctgAacatcgctgagctaagaggtttggaggaagcgatgactaatgctttgacagttgttaagaacaaactgatgatgaaGgtggctagtgtgctcccccaaagcgaggtcagttaa
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| Protein seq | MEGGGRRRKRGKVELRRIEDRTSRQVRFSKRRSGLFKKAYELSVLCDAQVALLVFSPAGRLYEFASSTSSIDTIFGRYWDLLDTTIDLNIEARESRLRQKERSDDPVPKINHITQCVLESNVNELNIAELRGLEEAMTNALTVVKNKLMMKVASVLPQSEVS |
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| Function | MADS-box transcription factor 51 [UniProtKB/Swiss-Prot:Q9XJ61] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_08g0022940 | OsNaBo_08g0022940.01 | Chr08 | 28073651 | 28083066 | + | NAM | ||
| CDS seq | atggagggaggagggaggaggaggaagagggggaaggtggagctgcggcggatagaggaccggacgagccggcaggtgcgattctcgaagcggcggagcgggctgttcaagaaggcgtacgagctgtccgtgctctgcgacgcccaggtcgccctcctcgtcttctcccccgccggccgcctctacgagttcgcctcttccacctccagcattgatacaatttttggtcggtattgggaccttctggacacaacaattgatctcaatattgaagcaagggaatctcggcttcgtcagAaagagcgttcagatgacccggtgcctaagataaaccacattactcaatgtgtgttggaatcaaatgtcaacgagctgAacatcgctgagctaagaggtttggaggaagcgatgactaatgctttgacagttgttaagaacaaactgatgatgaaGgtggctagtgtgctcccccaaagcgaggtcagttaa
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| Protein seq | MEGGGRRRKRGKVELRRIEDRTSRQVRFSKRRSGLFKKAYELSVLCDAQVALLVFSPAGRLYEFASSTSSIDTIFGRYWDLLDTTIDLNIEARESRLRQKERSDDPVPKINHITQCVLESNVNELNIAELRGLEEAMTNALTVVKNKLMMKVASVLPQSEVS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_08g0022940 | OsNaBo_08g0022940.02 | Chr08 | 28073677 | 28083383 | + | IsoSeq | ||
| CDS seq | cccactccactccacggccgtgcagctgcacagcagcagcagcagcagctcgcacggcgaggagatggagagatggagatggtgccccttcttctcctcccctccacaactttccttttctttgagaatggattccctcaccaccacattattattttagctagtagtacagtactagctcttcttcttgttgttcttgttctttcttcttcccct
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| Protein seq | PTPLHGRAAAQQQQQQLARRGDGEMEMVPLLLLPSTTFLFFENGFPHHHIIILASSTVLALLLVVLVLSSSP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr08 | 28075206 | 28082600 | + | OsNaBo_08g0022940.02 | OsNaBo_08g0022940.02,OsNaBo_08g0022940.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.443706 | 0.0 | 5.096095 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0531900 | RBH | 1.033710 | 1.327784 | 2.011137 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g41960 | RBH | 0.699049 | 0.893046 | 0.517706 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0531900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0023270 | RBH | 0.0 | 0.0 | 4.622912 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0023150 | RBH | 0.0 | 0.0 | 1.164625 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0023070 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0023310 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0023060 | RBH | 1.124825 | 0.0 | 8.958255 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0422600 | SBH | 0.330886 | 0.088628 | 66.128719 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0022940 | RBH | 0.232091 | 0.0 | 1.317351 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0443000 | RBH | 0.741241 | 0.0517905 | 57.6051295 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0022320 | RBH | 0.124550 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0022640 | RBH | 0.141454 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0022470 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0023280 | RBH | 0.000000 | 0.0 | 2.174635 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0022620 | RBH | 0.000000 | 1.165072 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G022800 | RBH | 0.191541 | 0.0 | 0.678476 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0015970 | SBH | 0.0 | 0.0 | 77.618706 |
