Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_08g0021920 | OGI:08073630 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr08:27261184-27262660 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctacAataactcttgcttgaaatggaacAagagcaatgcaggtagcagcagcagcagagaccacagctggttgtgccgcgtgctcgccgccgacgatgacggcatcatccgcttgctcgccgacgacggcatcgtcatccacgccggctgatcggcgctcccggcaccattgatgtcctccgtcggaggcggctggtagctgattatcccggcgccattgttgccagccggaggaggtgtgctgcctccggcgccgttctggccattggccggcgacggcgagctaatcagcggagtgacaccggaggtgttcgacctgtgcagaccatgggcaaaagatcgtcggaatgtgagtgttgagatgcgagctactcccttcgttttatattataagactttttcgaattgtccatattcaTataaatgttaatAaatctagatacatatatatgtctagattcattaacatatatatgaatcatgaatgtgggcaatcatataaagtctcataatatgaaacggaggaagtagttgaaaagagagaaataaatggttgatgaattggggttggttacccggtgggagggaggcagaaggcgatggtgtaggcggcggcgctgcaggtgaaggtgctcgtgccgtcgtcgtaggcgtagctgtaggcgcgcgggcacgccgtcttgaagatggccgagtacgccgtcggccggcacgtcgccggcgtcgcgtacgcgccgctgcagcagtactcctcctccccgaacgcctcgcacgcgctccggcacgccaccgtcccgctgccgccgccgccgtcgacgccgtccacctgcaactccttcggacacgctgcagatatatgctcacgtcagcgcaaacacgtacgacacgcgtgcatggatgcgcgacacgtacagcggttgaggtcggccgtgcagccggtggtggcgcagccgccgccgccgccggtggcgccgccggcctgcgggacggcgacgacggggaggttgtagccgtcgacgaggctcacgtcgtagtagtccaggtcaccggcgccggcgccgccgccgaccttccccagcgtgacctcgaacagcgtcgccggcggcgtggcgcccgtgccgccgcactccaagcggccgccgcagtcgccggtctggcacgcggcggcgccagcggcagcggcggcggcggcgccgccggcgccggagaagtcgcacccggtgcgcgcccatatccggccggaccaccccgccggcgccgggacctgcacgctctgCcccgggtcgagcctgaaccccgtcgtggccagctgcggcgtgccggcgccggccagcgtcgccggccatatcgtctgggcgcagtggttggatatcgtgaagctacagctcgccgccattgacgagctccaccactgcgccactagtgcgagcacaaagatcacacacgctggagctctccaacttcttggtgcttccat
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| CDS seq | atggaagcaccaagaagttggagagctccagcgtgtgtgatctttgtgctcgcactagtggcgcagtggtggagctcgtcaatggcggcgagctgtagcttcacgatatccaaccactgcgcccagacgatatggccggcgacgctggccggcgccggcacgccgcagctggccacgacggggttcaggctcgacccgggGcagagcgtgcaggtcccggcgccggcggggtggtccggccggatatgggcgcgcaccgggtgcgacttctccggcgccggcggcgccgccgccgccgctgccgctggcgccgccgcgtgccagaccggcgactgcggcggccgcttggagtgcggcggcacgggcgccacgccgccggcgacgctgttcgaggtcacgctggggaaggtcggcggcggcgccggcgccggtgacctggactactacgacgtgagcctcgtcgacggctacaacctccccgtcgtcgccgtcccgcaggccggcggcgccaccggcggcggcggcggctgcgccaccaccggctgcacggccgacctcaaccgctcgtgtccgaaggagttgcaggtggacggcgtcgacggcggcggcggcagcgggacggtggcgtgccggagcgcgtgcgaggcgttcggggaggaggagtactgctgcagcggcgcgtacgcgacgccggcgacgtgccggccgacggcgtactcggccatcttcaagacggcctcgccgtcgccggccaatggccagaacggcgccggaggcagcacacctcctccggctggcaacaatggcgccgggataatcagctaccagccgcctccgacggaggacatcaatggtgccgggagcgccgatcagccggcgtggatgacgatgccgtcgtcggcgagcaagcggatgatgccgtcatcgtcggcggcgagcacgcggcacaaccagctgtggtctctgctgctgctgctacctgcattgctctTgttccatttcaagcaagagttatTgtag
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| Protein seq | MEAPRSWRAPACVIFVLALVAQWWSSSMAASCSFTISNHCAQTIWPATLAGAGTPQLATTGFRLDPGQSVQVPAPAGWSGRIWARTGCDFSGAGGAAAAAAAGAAACQTGDCGGRLECGGTGATPPATLFEVTLGKVGGGAGAGDLDYYDVSLVDGYNLPVVAVPQAGGATGGGGGCATTGCTADLNRSCPKELQVDGVDGGGGSGTVACRSACEAFGEEEYCCSGAYATPATCRPTAYSAIFKTASPSPANGQNGAGGSTPPPAGNNGAGIISYQPPPTEDINGAGSADQPAWMTMPSSASKRMMPSSSAASTRHNQLWSLLLLLPALLLFHFKQELL |
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| Function | Thaumatin-like protein 1 [UniProtKB/Swiss-Prot:A0A1P8B554] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_08g0021920 | OsNaBo_08g0021920.01 | Chr08 | 27261184 | 27262660 | - | NAM | ||
| CDS seq | atggaagcaccaagaagttggagagctccagcgtgtgtgatctttgtgctcgcactagtggcgcagtggtggagctcgtcaatggcggcgagctgtagcttcacgatatccaaccactgcgcccagacgatatggccggcgacgctggccggcgccggcacgccgcagctggccacgacggggttcaggctcgacccgggGcagagcgtgcaggtcccggcgccggcggggtggtccggccggatatgggcgcgcaccgggtgcgacttctccggcgccggcggcgccgccgccgccgctgccgctggcgccgccgcgtgccagaccggcgactgcggcggccgcttggagtgcggcggcacgggcgccacgccgccggcgacgctgttcgaggtcacgctggggaaggtcggcggcggcgccggcgccggtgacctggactactacgacgtgagcctcgtcgacggctacaacctccccgtcgtcgccgtcccgcaggccggcggcgccaccggcggcggcggcggctgcgccaccaccggctgcacggccgacctcaaccgctcgtgtccgaaggagttgcaggtggacggcgtcgacggcggcggcggcagcgggacggtggcgtgccggagcgcgtgcgaggcgttcggggaggaggagtactgctgcagcggcgcgtacgcgacgccggcgacgtgccggccgacggcgtactcggccatcttcaagacggcctcgccgtcgccggccaatggccagaacggcgccggaggcagcacacctcctccggctggcaacaatggcgccgggataatcagctaccagccgcctccgacggaggacatcaatggtgccgggagcgccgatcagccggcgtggatgacgatgccgtcgtcggcgagcaagcggatgatgccgtcatcgtcggcggcgagcacgcggcacaaccagctgtggtctctgctgctgctgctacctgcattgctctTgttccatttcaagcaagagttatTgtag
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| Protein seq | MEAPRSWRAPACVIFVLALVAQWWSSSMAASCSFTISNHCAQTIWPATLAGAGTPQLATTGFRLDPGQSVQVPAPAGWSGRIWARTGCDFSGAGGAAAAAAAGAAACQTGDCGGRLECGGTGATPPATLFEVTLGKVGGGAGAGDLDYYDVSLVDGYNLPVVAVPQAGGATGGGGGCATTGCTADLNRSCPKELQVDGVDGGGGSGTVACRSACEAFGEEEYCCSGAYATPATCRPTAYSAIFKTASPSPANGQNGAGGSTPPPAGNNGAGIISYQPPPTEDINGAGSADQPAWMTMPSSASKRMMPSSSAASTRHNQLWSLLLLLPALLLFHFKQELL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0517800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g40600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0517800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0022260 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0022150 | RBH | 0.0 | 0.0 | 0.215256 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0022040 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0022160 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0022030 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0409500 | RBH | 0.1388265 | 0.8981375 | 0.0344895 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0021910 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0430500 | RBH | 0.146782 | 0.436516 | 0.1426385 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0021270 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0021580 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0021390 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0022240 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0021580 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G021750 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0015470 | RBH | 0.0 | 0.0 | 0.0 |
