Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_08g0016610 | OGI:08060860 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr08:22079775-22083179 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcagttgaagtgcacaCcacttgacaaaccgttaatccccttcggttgcctccacgggaacggcacaagatcgaggttggttgttgagccgtagatttttggtgtgagcgtcaccggactcagcaaaacatccccataggattcgtcattgaatctgaggaattctaacaaccctgacaatcgaaattgcacagggggtccgagctcaacccgaatgacaaaccatgtgcggcttctgctactaggaatcaaaagagagggccaaaacgtagaccagccaaccaacaacaatggggcttttgagaggctgccaatagacttctgtcttgctttgaggcctgagatggctaaggagagggcgacctgcaacatggaaccataagaTtttgagcagaacaaacacccaatcacaaggcttccaaaggcttcggcttgaaggaggatgtagatgacgacgagccaaccgctgccgccaacagaggaagaagctgcaccaacagtggcaccggctagcacacagcaagcgactggagttcagggggcgacaactgccacaccgccgatcatagcacacatgccgacgcctgccggcgccacagctagcataggtgcgacagagggaaacaacgccaccgctagctcgggcacggcgaagggggacgacagacgtcgtaacgccgaggacagcgcagagaccgtcgccacctcaacgacgaccaccgaagtgccaggcgcgacgcagactccgtctccaccaccaacacaaacccgcacacgagcagggtgtcggcaaccactgccagaagctcctcctccaccaccaccaaggccatccagatccggaaactctatcttactttggggctcttgctcggggatgatttgaccgccatgtcttcgattcgccgtccacgaggcgcagaggtaccaactcccaccaccgccgctaacgagaacaccggtcgccaccattagaggccagactaactagagaaacagaaccaacctgactaaagagtactaggggaaggtggccggacccctcctccaaccctcgccgacagcgaaccgctgaaatcgaaggggaagaggggctggaggggagagaaatcagagaggttactgtagaggaaaggggaacgagaGgggaatgcttcaaatgtaactctttggtaacactaaattttggtaaggtaagcaatgaagtgaacatgcccttagacttgtgaatcaacttgccaaactctagttataagtatatagcagaagcccattaccattaccatttgtatttactctgaaataacaaaaTttatttccctacggcccagcgttgaagagactaacagaaccttaacctcgaacagcttgactaacataaactcctacgaaaacgtggctaatagagagcccttgcaagtactacagtgcattctattagggctccTttcatagaatttcatagaacttccatgaaacaactaggactttcatagatttttcagatattttttttcaattcttgtgaaattcctcctctctgaaagaggccctcggtatgcagcactaccatcgtgtatagagtgctatgtatatgcgcacaaactacaagatgatcctacattggcatcggcataaacaagctgcagaccAaaaaaagaaaaattccaccaaggttcctgcttggttatcacgcggacgcggttgtaacaattatcacgtacggtaaccttctcaacttttaaaaccagaccacgatgtgaggtaatcttctcaacttttaaaaccagaccacgatataactcacagtaaccacacggttttttaaaaccagaccacgatataactcacagtaaccacacggttttcgcagtaaaggcaaagttacaacggtaacagctaaaccgtgaagtaacgataatcctatcccaaacggtttgataaacccagattctaactactaatacctcacagaagtgagaaagcaaaaaaaaacaaaaacaaaaactcctatacgcaaatgcaacagaggcacacagctggcagcacaccagtacagtacagtagaatgaatggatgtgtgcaatgcaatgcaacactacgggcagctacacgacaaaacatccaaagtactatcacagccacaaccaccaccactctctcactgtccactccactccactggataagcatggtcaaaccagctgcagctgaatgattagcacgccatcaacacagcagttagcatgctaagcaccgtcattatcagcatcagaaacggtcaaaacactcgaggcaaatcaaatcagcatcccttggaaacaaatcaccatccattaattgtacacatcatcatccacattagcttagcttaattaatccactcagcagcatcagcaggaggagaagcctagctcagccttaatcttacaacaacaacacataagcagcagcagcaacatgattaagcctaattacccgattaattgtactaagagcacaacaattagaggaaattaaaggaagcgaagcctaagagagattaagattaagaagaagtaattaacaaaccccatctcgcccccccccccaattcgatgccactacgccctaaccctaaccctagagattggggttggtcaggccgccgccgcctcgctggggacggcggggcgtaccttgggtggccggccgcggccgcgcttgacgggagcggagccgtcgccggcggcgggaggaggggcgggagccgtcttggccttcttgggcgggcggccgcgggacttggggatggcgtcggagatggggtccttggacttgggcgggcggccgcgggggcgcggcgaggagggcttgggcggcggcggcggcgcgttggggtcccgcggcttgggggggcggccccggccgcgcttgggcggcgcgtcgggcgcgtcggcgcggaagtagttgttcttgaggaagatgagctcaccggactccttcatcctggccaggtgcgccgtgagcagcgacgcgtgcgccggcggcaggtccccgtacttcccctcgatgaacttggagatcgccgacttgttcgacccgctcttctcgttcagCcccCTCGATCGCCGCTAGTATCATCTGCACACCACAAATCCCAAATCAACCCCCAAGAACCAACCCAAACAAAGAGAAAACAAGAAATTCACCTCCGGGTAGGGCGGGAGAGGCGGCGGCTTGGAGGCTTCGTCGGCGGCGGCCATGGCGGAGGAGGAGGAGGGGGTGGGGGAGATGGGGATGGGGAATTTTCGCTCACGAAGAGGAGGATATATGAAGAAGAGAGAGATGGATTTGGATCAGGAATAGATAAGAAAATATGGAGGAGGAAGGAAGGAAGAGGAGATGGATGGGCTCGCCTTCTTT
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| CDS seq | ATGGCCGCCGCCGACGAAGCCTCCAAGCCGCCGCCTCTCCCGCCCTACCCGGAGCGGCGATCGAGgggGctgaacgagaagagcgggtcgaacaagtcggcgatctccaagttcatcgaggggaagtacggggacctgccgccggcgcacgcgtcgctgctcacggcgcacctggccaggatgaaggagtccggtgagctcatcttcctcaagaacaactacttccgcgccgacgcgcccgacgcgccgcccaagcgcggccggggccgcccccccaagccgcgggaccccaacgcgccgccgccgccgcccaagccctcctcgccgcgcccccgcggccgcccgcccaagtccaaggaccccatctccgacgccatccccaagtcccgcggccgcccgcccaagaaggccaagacggctcccgcccctcctcccgccgccggcgacggctccgctcccgtcaagcgcggccgcggccggccacccaagttagtctggcctctaatggtggcgaccggtgttctcgttagcggcggtggtgggagttggtacctctgcgcctcgtggacggcgaatcgaagacatggcggtcaaatcatccccgagcaagagccccaaagtaagatagagtttccggatctggatggccttggtggtggtggaggaggagcttctggcagtggttgccgacaccctgctcgtgtgcgggtttgtgttggtggtggagacggagtctgcgtcgcgcctggcacttcggtggtcgtcgttgaggtggcgacggtctctgcgctgtcctcggcgttacgacgtctgtcgtcccccttcgccgtgcccgagctagcggtggcgttgtttccctctgtcgcacctatgctagctgtggcgccggcaggcgtcggcatgtgtgctatgatcggcgcttcttcctctgttggcggcagcggttggctcgtcgtcatctacatcctccttcaagccgaagcctttggaagccttgtgattgggtgtttgttctgctcaaaAtcttatggttccatgttgcaggtcgccctctccttagccatctcaggcctcaaagcaagacagaagtctattggcagcctctcaaaagccccattgttgttggttggctggtctacgttttggccctctcttttgattcctagtagcagaagccgcacatggtttgtcattcgggttgagctcggaccccctgtgcaatttcgattgtcagggttgttagaattcctcagattcaatgacgaatcctatggggatgttttgctgagtccggtgacgctcacaccaaaaatctacggctcaacaaccaacctcgatcttgtgccgttcccgtggaggcaaccgaaggggattaacggtttgtcaagtgGtgtgcacttcaactga
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| Protein seq | MAAADEASKPPPLPPYPERRSRGLNEKSGSNKSAISKFIEGKYGDLPPAHASLLTAHLARMKESGELIFLKNNYFRADAPDAPPKRGRGRPPKPRDPNAPPPPPKPSSPRPRGRPPKSKDPISDAIPKSRGRPPKKAKTAPAPPPAAGDGSAPVKRGRGRPPKLVWPLMVATGVLVSGGGGSWYLCASWTANRRHGGQIIPEQEPQSKIEFPDLDGLGGGGGGASGSGCRHPARVRVCVGGGDGVCVAPGTSVVVVEVATVSALSSALRRLSSPFAVPELAVALFPSVAPMLAVAPAGVGMCAMIGASSSVGGSGWLVVIYILLQAEAFGSLVIGCLFCSKSYGSMLQVALSLAISGLKARQKSIGSLSKAPLLLVGWSTFWPSLLIPSSRSRTWFVIRVELGPPVQFRLSGLLEFLRFNDESYGDVLLSPVTLTPKIYGSTTNLDLVPFPWRQPKGINGLSSGVHFN |
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| Function | HMG-Y-related protein A [UniProtKB/Swiss-Prot:Q9FYS5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_08g0016610 | OsNaBo_08g0016610.01 | Chr08 | 22079775 | 22083131 | - | NAM | ||
| CDS seq | ATGGCCGCCGCCGACGAAGCCTCCAAGCCGCCGCCTCTCCCGCCCTACCCGGAGCGGCGATCGAGgggGctgaacgagaagagcgggtcgaacaagtcggcgatctccaagttcatcgaggggaagtacggggacctgccgccggcgcacgcgtcgctgctcacggcgcacctggccaggatgaaggagtccggtgagctcatcttcctcaagaacaactacttccgcgccgacgcgcccgacgcgccgcccaagcgcggccggggccgcccccccaagccgcgggaccccaacgcgccgccgccgccgcccaagccctcctcgccgcgcccccgcggccgcccgcccaagtccaaggaccccatctccgacgccatccccaagtcccgcggccgcccgcccaagaaggccaagacggctcccgcccctcctcccgccgccggcgacggctccgctcccgtcaagcgcggccgcggccggccacccaagttagtctggcctctaatggtggcgaccggtgttctcgttagcggcggtggtgggagttggtacctctgcgcctcgtggacggcgaatcgaagacatggcggtcaaatcatccccgagcaagagccccaaagtaagatagagtttccggatctggatggccttggtggtggtggaggaggagcttctggcagtggttgccgacaccctgctcgtgtgcgggtttgtgttggtggtggagacggagtctgcgtcgcgcctggcacttcggtggtcgtcgttgaggtggcgacggtctctgcgctgtcctcggcgttacgacgtctgtcgtcccccttcgccgtgcccgagctagcggtggcgttgtttccctctgtcgcacctatgctagctgtggcgccggcaggcgtcggcatgtgtgctatgatcggcgcttcttcctctgttggcggcagcggttggctcgtcgtcatctacatcctccttcaagccgaagcctttggaagccttgtgattgggtgtttgttctgctcaaaAtcttatggttccatgttgcaggtcgccctctccttagccatctcaggcctcaaagcaagacagaagtctattggcagcctctcaaaagccccattgttgttggttggctggtctacgttttggccctctcttttgattcctagtagcagaagccgcacatggtttgtcattcgggttgagctcggaccccctgtgcaatttcgattgtcagggttgttagaattcctcagattcaatgacgaatcctatggggatgttttgctgagtccggtgacgctcacaccaaaaatctacggctcaacaaccaacctcgatcttgtgccgttcccgtggaggcaaccgaaggggattaacggtttgtcaagtgGtgtgcacttcaactga
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| Protein seq | MAAADEASKPPPLPPYPERRSRGLNEKSGSNKSAISKFIEGKYGDLPPAHASLLTAHLARMKESGELIFLKNNYFRADAPDAPPKRGRGRPPKPRDPNAPPPPPKPSSPRPRGRPPKSKDPISDAIPKSRGRPPKKAKTAPAPPPAAGDGSAPVKRGRGRPPKLVWPLMVATGVLVSGGGGSWYLCASWTANRRHGGQIIPEQEPQSKIEFPDLDGLGGGGGGASGSGCRHPARVRVCVGGGDGVCVAPGTSVVVVEVATVSALSSALRRLSSPFAVPELAVALFPSVAPMLAVAPAGVGMCAMIGASSSVGGSGWLVVIYILLQAEAFGSLVIGCLFCSKSYGSMLQVALSLAISGLKARQKSIGSLSKAPLLLVGWSTFWPSLLIPSSRSRTWFVIRVELGPPVQFRLSGLLEFLRFNDESYGDVLLSPVTLTPKIYGSTTNLDLVPFPWRQPKGINGLSSGVHFN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_08g0016610 | OsNaBo_08g0016610.02 | Chr08 | 22082092 | 22083179 | - | IsoSeq | ||
| CDS seq | AGAAGGCGAGCCCATCCATCTCCTCTTCCTTCCTTCCTCCTCCATATTTTCTTATCTATTCCTGATCCAAATCCATCTCTCTCTTCTTCATATATCCTCCTCTTCGTGAGCGAAAATTCCCCATCCCCATCTCCCCCACCCCCTCCTCCTCCTCCGCCATGGCCGCCGCCGACGAAGCCTCCAAGCCGCCGCCTCTCCCGCCCTACCCGGAG
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| Protein seq | RRRAHPSPLPSFLLHIFLSIPDPNPSLSSSYILLFVSENSPSPSPPPPPPPPPWPPPTKPPSRRLSRPTR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr08 | 22082887 | 22082966 | - | OsNaBo_08g0016610.02 | OsNaBo_08g0016610.01,OsNaBo_08g0016610.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.455560 | 54.514225 | 5.956806 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0428800 | RBH | 3.022981 | 2.251283 | 8.106663 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g33190 | RBH | 0.600506 | 0.300607 | 0.470378 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0428800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0016800 | RBH | 0.477146 | 0.000000 | 1.711081 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0016670 | RBH | 0.126721 | 2.484740 | 1.751542 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0016630 | RBH | 1.646858 | 2.773443 | 2.718975 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0016970 | RBH | 0.120456 | 0.081107 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0016800 | RBH | 4.323775 | 9.794855 | 5.696628 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0329500 | RBH | 16.5317075 | 30.0103655 | 34.457222 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0016690 | RBH | 0.381153 | 0.162493 | 0.588281 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0351100 | RBH | 15.675984 | 35.9716075 | 91.0736545 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0016050 | RBH | 0.131168 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0016330 | RBH | 0.302350 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0016120 | RBH | 0.000000 | 35.555588 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0016940 | RBH | 1.133412 | 0.527035 | 0.525859 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0016350 | RBH | 1.717034 | 6.737467 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G016490 | RBH | 0.803895 | 4.098539 | 5.326488 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0009880 | RBH | 7.605142 | 28.932758 | 10.883899 |
