Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_08g0015580 | OGI:08057900 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr08:21221714-21225830 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTTTACTTCAACTGAAAGCAGAAACAAGAAACAGAAAGAGGAAAGGAACAATGTAACAATAGACGGTTTAAGAGGAAAATTAATATATTACCAAACCATATTGGCATCTCGATTTTGGCTGGAAACTTTCTGTTTAGTTCCATGTTGTATGATGTCCCAAGTCAGCTCTGCTCATCATTTTCCACATTCCTTAAAATTGTAAGGATTTCAACGTGGTAGCTTCCTCGGAGAGAAACCGAGTTAGTGGTTGCAGCCAGTGCAGCCTCCTCGCAATCACTGGCATCCCTACAGTCGATGAAGATAAGGACATGCCTGAGGGAGGCAAGGAGCTGGATGCCAAAATCGAGTCCAGCTCCATACGCAGATACCATATCATGTGCGTTGAAACCAAACTCAAGCTGCTGGAGCTTCGGCATAGCCCCTGCTTCAAACATCACACCCATACCAAGTCCATTTTTGATAGTTGACTGATGACGCAAGATCAAAGCCAGATCAACATAGGATGGACCATAAGTAAATTCCTTCAGGCATGAGAATCCACTGCAGCTAACTTTGAGAGTATGCTTGGGGTACCCTGGGTATAGATCGAGACGAAGCAGGGCAGGCAAGCACTTGAGAACCTGGAGATCCTCCTCTCCCACCTTCTTCATATgtgtattcttaagcaggtgagctcagagagggaggacatccatgttggaagactagaaaaataacagcccatatcagtctgaaatgtctgaagatgacgtggaggaggggaccacgattcagccaagatatctaaggaacaggggtatatattccgaatacaaagagactgaaggttaaatccacctagcttgcagagagatctgaCtaaatggttgatgtacacTtcatgaccAcTttctgtgtcatcgcaattccagtaCacatcaagatccttcagtttggttaggttaccgagctcttgaatgatagctgatgagttttcagtgcCatCgaacactgatagcacctgaagagcttccatgttaccaattccatttggcaattctacacgccaaggcagaaaaaggcggaccaattggagcagttgaacaatagattgaggtaacttctttaccgctgttCCacttaggtccagtgtttgcaagagcTttagcttcccaatttgccttggtatCctgctaatatttccaagtctgacatacctcagttgaaataaacttccaatattctcgatatgatcatccttcaaactagagcaattcaagaggtctagtactcgtaaaacttcaaggtccacaagaGggggtatcttgttAaaatcaccaaagacagagagcgaccgagcatgagaaaaactagtggttctcagccacgtgatcctttCcacacttttacattggagggagaaacggtgaatcttgTtggatgatggTgcacagtgctgaccatccagtatagttgcaaaATtttCTtcagtagacagagatatcataagatcaagcatgatatcatgcatccgataggcctctcttctactaaaagggtcaatctcaaatgattgaaccatAttcctaTttatgagctcaTtaaaatatttttctCccacttcctctaaaCactctcctcgttgttcagtaatgaatCcttcagcgatccatcTcgatatcAaaaaatctctagtaattgtatgatcctcagggaaaatgcttaaatacaaaagacaagactttaagtggtgaggtagatcactgtaactaagaaatagtatcctcttcactactgccaactcgtgtgacccctgatctttCataactgtggaaCcaaaggagttcagcacccAtacccactcctgcttcgtaactggtttacatgataaaaggctagctatactaactatggccAatggcaaaccatcacactttttaagtatatcatcagcaacttcttccaattcaggggggcatttctccttggagctaaagATtcttctaaaaaataatgcctcagagttctcactgctaaggggcttcatggcataaacaaaatcttcatgtgagaagtgacaagctatagctacatcattgatgcgtgtagttgtaattattctgcttgcagagTtatTCtcaggaaaagcaaaTcggaggtggtctcgccatgcagctttatcccatatatcatcaattacaatgaagtaCctattattcaatatgtaaaaaaaaaacatatcacttgtacgcatttccatataaaaatggtaagggaacatccatcaaataactcaagatattgcaTtttgataTGtacatgcctaaaaatttggggtaggttatCtactactccctccgttTcacaatgtaagTCAttCtagCatttccCacattcatattgatgttaatgaatctagacatatatatctatctagattcattaacatcaatatatatgtgaaaaatgctagaatgacttacattgtgaaacggagggagtaattggcaatgccatgtgaagtgtttcaTttttccctaataaggggcaattttaataaaaattaacagaagaaaccacccaaattaattGgtttgtactttgaccagttcaatttataaaactaaaggtgcggtaacattgtagaaaaatatgattaaaaacaacacaaactaaagaaagtagaccatccgaccatcaaatccTtacatctagaataacaaacatgttcatacctgctattctgtaggttttctcttatcaggctgataagcttacaatcttcaaaagttttgtgcTttagatcttctattGtgtcactatgctgcttctgatgaactgatgatagcTttcttgtctcgagaaTtccaataagtatgTtggctaggatcttattgacgttgggaTtccgtgacacagacacAaaagctgtgcgatcaaattggcttttgatatgttgatagacctgattggcaagagttgtcTggcctaatcccccaaatccgacaatagagacaactctgcgttgtggagccaaattgattcctcccgtaagaaattcaacaagttcatCccttggaccttcgatgCccacaagcctgtccatctcctcgaacagcgcaggcagcctggaatcgatggcgatcgcagcagagctagatgcagctgcatccaactcatacctcttgcgccggtcattgaccagcacggcacgatccttcagctcggcgatctggcctgcgatgcagtggCggctccggagagccttgagccggcgtttggtcctgcggaagagcccgtcgccggggtcatggtggccaaggcggtgcacgaagacgtcgatgcaatcctctacatcataggacagctcccgcagctggcgcatccactccttgacctgcgagctgggctcctcctccgaatcggagaccgcctccagcgcggtgttcatgctgctcagctcgtctcgcaggagcgcgacctcgcggcccacccccttgagcttgccgtactccctctcgagcaggccggagagcttcgtgaggaggggattcatcaCcccgatcaaagcactcgccgtggctccgaccatctttCccaatcctcctctctgtgaatctcAggtgcaaccgtgcaacgcttgatcTttggtggttttgggagaccaagaacacccagacgagctatggctgcagcgagagtgagatgcccggatccatggaagatgaaggggtcaagaacacgcgggggaaccaacggaagcttcgtgggggaggggggattgatgccgatccgtcgcgccaaacgccaatggagggcgtggaaaggggaaatcgacggggaatagctccatcgccgccgcactttgcgaataattttgcTtttctttcggcgAaaaCcaatcgacggaatcttggaacaacgagcaggatttgtacaaatctttaccaccgtggaccgcgacgacgttgacggaggCgcgggTgcgggtggagccggtggcgtttccgcggccggccattccagcgttgctcggcgggagaggaggtgatggaccgggTgggtggcggcgccgtcgtgaCcggcggtgagagcaaggaggcggcgagcggcgaagagtagtggagagtccgagagt
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| CDS seq | atggtcggagccacggcgagtgctttgatcgggGtgatgaatcccctcctcacgaagctctccggcctgctcgagagggagtacggcaagctcaagggggtgggccgcgaggtcgcgctcctgcgagacgagctgagcagcatgaacaccgcgctggaggcggtctccgattcggaggaggagcccagctcgcaggtcaaggagtggatgcgccagctgcgggagctgtcctatgatgtagaggattgcatcgacgtcttcgtgcaccgccttggccaccatgaccccggcgacgggctcttccgcaggaccaaacgccggctcaaggctctccggagccGccactgcatcgcaggccagatcgccgagctgaaggatcgtgccgtgctggtcaatgaccggcgcaagaggtatgagttggatgcagctgcatctagctctgctgcgatcgccatcgattccaggctgcctgcgctgttcgaggagatggacaggcttgtggGcatcgaaggtccaaggGatgaacttgttgaatttcttacgggaggaatcaatttggctccacaacgcagagttgtctctattgtcggatttgggggattaggccAgacaactcttgccaatcaggtctatcaacatatcaaaagccaatttgatcgcacagctttTgtgtctgtgtcacggaAtcccaacgtcaataagatcctagccaAcatacttattggaAttctcgagacaagaaAgctatcatcagttcatcagaagcagcatagtgacaCaatagaagatctaaAgcacaaaacttttgaagattgtaagcttatcagcctgataagagaaaacctacagaatagcagGtacttcattgtaattgatgatatatgggataaagctgcatggcgagaccacctccgAtttgcttttcctgaGAataActctgcaagcagaataattacaactacacgcatcaatgatgtagctatagcttgtcacttctcacatgaagattttgtttatgccatgaagccccttagcagtgagaactctgaggcattattttttagaagaATctttagctccaaggagaaatgcccccctgaattggaagaagttgctgatgatatacttaaaaagtgtgatggtttgccatTggccatagttagtatagctagccttttatcatgtaaaccagttacgaagcaggagtgggtaTgggtgctgaactcctttgGttccacagttatGaaagatcaggggtcacacgagttggcagtagtgaagaggatactatttcttagttacagtgatctacctcaccacttaaagtcttgtcttttgtatttaagcattttccctgaggatcatacaattactagagatttttTgatatcgAgatggatcgctgaagGattcattactgaacaacgaggagagtGtttagaggaagtggGagaaaaatattttaAtgagctcataaAtaggaaTatggttcaatcatttgagattgacccttttagtagaagagaggcctatcggatgcatgatatcatgcttgatcttatgatatctctgtctactgaAGaaaATtttgcaactatactggatggtcagcactgtgcAccatcatccaAcaagattcaccgtttctccctccaatgtaaaagtgtgGaaaggatcacgtggctgagaaccactagtttttctcatgctcggtcgctctctgtctttggtgatttTaacaagataccccCtcttgtggaccttgaagttttacgagtactagacctcttgaattgctctagtttgaaggatgatcatatcgagaatattggaagtttatttcaactgaggtatgtcagacttggaaatattagcagGataccaaggcaaattgggaagctaaAgctcttgcaaacactggacctaagtGGaacagcggtaaagaagttacctcaatctattgttcaactgctccaattggtccgcctttttctgccttggcgtgtagaattgccaaatggaattggtaacatggaagctcttcaggtgctatcagtgttcGatGgcactgaaaactcatcagctatcattcaagagctcggtaacctaaccaaactgaaggatcttgatgtGtactggaattgcgatgacacagaaAgTggtcatgaAgtgtacatcaaccatttaGtcagatctctctgcaagctagctcacctgcttaagaatacacATATGAAGAAGGTGGGAGAGGAGGATCTCCAGGTTCTCAAGTGCTTGCCTGCCCTGCTTCGTCTCGATCTATACCCAGGGTACCCCAAGCATACTCTCAAAGTTAGCTGCAGTGGATTCTCATGCCTGAAGGAATTTACTTATGGTCCATCCTATGTTGATCTGGCTTTGATCTTGCGTCATCAGTCAACTATCAAAAATGGACTTGGTATGGGTGTGATGTTTGAAGCAGGGGCTATGCCGAAGCTCCAGCAGCTTGAGTTTGGTTTCAACGCACATGATATGGTATCTGCGTATGGAGCTGGACTCGATTTTGGCATCCAGCTCCTTGCCTCCCTCAGGCATGTCCTTATCTTCATCGACTGTAGGGATGCCAGTGATTGCGAGGAGGCTGCACTGGCTGCAACCACTAACTCGGTTTCTCTCCGAGGAAGCTACCACGTTGAAATCCTTACAATTTTAAGGAATGTGGAAAATGATGAGCAGAGCTGA
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| Protein seq | MVGATASALIGVMNPLLTKLSGLLEREYGKLKGVGREVALLRDELSSMNTALEAVSDSEEEPSSQVKEWMRQLRELSYDVEDCIDVFVHRLGHHDPGDGLFRRTKRRLKALRSRHCIAGQIAELKDRAVLVNDRRKRYELDAAASSSAAIAIDSRLPALFEEMDRLVGIEGPRDELVEFLTGGINLAPQRRVVSIVGFGGLGQTTLANQVYQHIKSQFDRTAFVSVSRNPNVNKILANILIGILETRKLSSVHQKQHSDTIEDLKHKTFEDCKLISLIRENLQNSRYFIVIDDIWDKAAWRDHLRFAFPENNSASRIITTTRINDVAIACHFSHEDFVYAMKPLSSENSEALFFRRIFSSKEKCPPELEEVADDILKKCDGLPLAIVSIASLLSCKPVTKQEWVWVLNSFGSTVMKDQGSHELAVVKRILFLSYSDLPHHLKSCLLYLSIFPEDHTITRDFLISRWIAEGFITEQRGECLEEVGEKYFNELINRNMVQSFEIDPFSRREAYRMHDIMLDLMISLSTEENFATILDGQHCAPSSNKIHRFSLQCKSVERITWLRTTSFSHARSLSVFGDFNKIPPLVDLEVLRVLDLLNCSSLKDDHIENIGSLFQLRYVRLGNISRIPRQIGKLKLLQTLDLSGTAVKKLPQSIVQLLQLVRLFLPWRVELPNGIGNMEALQVLSVFDGTENSSAIIQELGNLTKLKDLDVYWNCDDTESGHEVYINHLVRSLCKLAHLLKNTHMKKVGEEDLQVLKCLPALLRLDLYPGYPKHTLKVSCSGFSCLKEFTYGPSYVDLALILRHQSTIKNGLGMGVMFEAGAMPKLQQLEFGFNAHDMVSAYGAGLDFGIQLLASLRHVLIFIDCRDASDCEEAALAATTNSVSLRGSYHVEILTILRNVENDEQS |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:F7J0N2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_08g0015580 | OsNaBo_08g0015580.01 | Chr08 | 21221714 | 21225830 | - | NAM | ||
| CDS seq | atggtcggagccacggcgagtgctttgatcgggGtgatgaatcccctcctcacgaagctctccggcctgctcgagagggagtacggcaagctcaagggggtgggccgcgaggtcgcgctcctgcgagacgagctgagcagcatgaacaccgcgctggaggcggtctccgattcggaggaggagcccagctcgcaggtcaaggagtggatgcgccagctgcgggagctgtcctatgatgtagaggattgcatcgacgtcttcgtgcaccgccttggccaccatgaccccggcgacgggctcttccgcaggaccaaacgccggctcaaggctctccggagccGccactgcatcgcaggccagatcgccgagctgaaggatcgtgccgtgctggtcaatgaccggcgcaagaggtatgagttggatgcagctgcatctagctctgctgcgatcgccatcgattccaggctgcctgcgctgttcgaggagatggacaggcttgtggGcatcgaaggtccaaggGatgaacttgttgaatttcttacgggaggaatcaatttggctccacaacgcagagttgtctctattgtcggatttgggggattaggccAgacaactcttgccaatcaggtctatcaacatatcaaaagccaatttgatcgcacagctttTgtgtctgtgtcacggaAtcccaacgtcaataagatcctagccaAcatacttattggaAttctcgagacaagaaAgctatcatcagttcatcagaagcagcatagtgacaCaatagaagatctaaAgcacaaaacttttgaagattgtaagcttatcagcctgataagagaaaacctacagaatagcagGtacttcattgtaattgatgatatatgggataaagctgcatggcgagaccacctccgAtttgcttttcctgaGAataActctgcaagcagaataattacaactacacgcatcaatgatgtagctatagcttgtcacttctcacatgaagattttgtttatgccatgaagccccttagcagtgagaactctgaggcattattttttagaagaATctttagctccaaggagaaatgcccccctgaattggaagaagttgctgatgatatacttaaaaagtgtgatggtttgccatTggccatagttagtatagctagccttttatcatgtaaaccagttacgaagcaggagtgggtaTgggtgctgaactcctttgGttccacagttatGaaagatcaggggtcacacgagttggcagtagtgaagaggatactatttcttagttacagtgatctacctcaccacttaaagtcttgtcttttgtatttaagcattttccctgaggatcatacaattactagagatttttTgatatcgAgatggatcgctgaagGattcattactgaacaacgaggagagtGtttagaggaagtggGagaaaaatattttaAtgagctcataaAtaggaaTatggttcaatcatttgagattgacccttttagtagaagagaggcctatcggatgcatgatatcatgcttgatcttatgatatctctgtctactgaAGaaaATtttgcaactatactggatggtcagcactgtgcAccatcatccaAcaagattcaccgtttctccctccaatgtaaaagtgtgGaaaggatcacgtggctgagaaccactagtttttctcatgctcggtcgctctctgtctttggtgatttTaacaagataccccCtcttgtggaccttgaagttttacgagtactagacctcttgaattgctctagtttgaaggatgatcatatcgagaatattggaagtttatttcaactgaggtatgtcagacttggaaatattagcagGataccaaggcaaattgggaagctaaAgctcttgcaaacactggacctaagtGGaacagcggtaaagaagttacctcaatctattgttcaactgctccaattggtccgcctttttctgccttggcgtgtagaattgccaaatggaattggtaacatggaagctcttcaggtgctatcagtgttcGatGgcactgaaaactcatcagctatcattcaagagctcggtaacctaaccaaactgaaggatcttgatgtGtactggaattgcgatgacacagaaAgTggtcatgaAgtgtacatcaaccatttaGtcagatctctctgcaagctagctcacctgcttaagaatacacATATGAAGAAGGTGGGAGAGGAGGATCTCCAGGTTCTCAAGTGCTTGCCTGCCCTGCTTCGTCTCGATCTATACCCAGGGTACCCCAAGCATACTCTCAAAGTTAGCTGCAGTGGATTCTCATGCCTGAAGGAATTTACTTATGGTCCATCCTATGTTGATCTGGCTTTGATCTTGCGTCATCAGTCAACTATCAAAAATGGACTTGGTATGGGTGTGATGTTTGAAGCAGGGGCTATGCCGAAGCTCCAGCAGCTTGAGTTTGGTTTCAACGCACATGATATGGTATCTGCGTATGGAGCTGGACTCGATTTTGGCATCCAGCTCCTTGCCTCCCTCAGGCATGTCCTTATCTTCATCGACTGTAGGGATGCCAGTGATTGCGAGGAGGCTGCACTGGCTGCAACCACTAACTCGGTTTCTCTCCGAGGAAGCTACCACGTTGAAATCCTTACAATTTTAAGGAATGTGGAAAATGATGAGCAGAGCTGA
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| Protein seq | MVGATASALIGVMNPLLTKLSGLLEREYGKLKGVGREVALLRDELSSMNTALEAVSDSEEEPSSQVKEWMRQLRELSYDVEDCIDVFVHRLGHHDPGDGLFRRTKRRLKALRSRHCIAGQIAELKDRAVLVNDRRKRYELDAAASSSAAIAIDSRLPALFEEMDRLVGIEGPRDELVEFLTGGINLAPQRRVVSIVGFGGLGQTTLANQVYQHIKSQFDRTAFVSVSRNPNVNKILANILIGILETRKLSSVHQKQHSDTIEDLKHKTFEDCKLISLIRENLQNSRYFIVIDDIWDKAAWRDHLRFAFPENNSASRIITTTRINDVAIACHFSHEDFVYAMKPLSSENSEALFFRRIFSSKEKCPPELEEVADDILKKCDGLPLAIVSIASLLSCKPVTKQEWVWVLNSFGSTVMKDQGSHELAVVKRILFLSYSDLPHHLKSCLLYLSIFPEDHTITRDFLISRWIAEGFITEQRGECLEEVGEKYFNELINRNMVQSFEIDPFSRREAYRMHDIMLDLMISLSTEENFATILDGQHCAPSSNKIHRFSLQCKSVERITWLRTTSFSHARSLSVFGDFNKIPPLVDLEVLRVLDLLNCSSLKDDHIENIGSLFQLRYVRLGNISRIPRQIGKLKLLQTLDLSGTAVKKLPQSIVQLLQLVRLFLPWRVELPNGIGNMEALQVLSVFDGTENSSAIIQELGNLTKLKDLDVYWNCDDTESGHEVYINHLVRSLCKLAHLLKNTHMKKVGEEDLQVLKCLPALLRLDLYPGYPKHTLKVSCSGFSCLKEFTYGPSYVDLALILRHQSTIKNGLGMGVMFEAGAMPKLQQLEFGFNAHDMVSAYGAGLDFGIQLLASLRHVLIFIDCRDASDCEEAALAATTNSVSLRGSYHVEILTILRNVENDEQS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.138637 | 3.459496 | 1.703473 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0412100 | RBH | 0.840449 | 0.769904 | 1.208634 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g31800 | RBH | 0.568339 | 0.517184 | 0.311873 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0412100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0015780 | RBH | 0.094349 | 3.650717 | 1.224415 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0015650 | RBH | 0.072316 | 1.461491 | 0.790157 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0015580 | RBH | 0.237466 | 1.218224 | 1.798615 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0015920 | RBH | 0.079370 | 0.064984 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0015700 | RBH | 1.097722 | 4.781658 | 3.866145 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0314300 | RBH | 1.7789175 | 8.2672435 | 3.834084 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0015660 | RBH | 0.081834 | 0.179535 | 0.396354 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0335600 | RBH | 34.98224 | 112.022419 | 161.07489 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0015170 | RBH | 0.090753 | 0.099299 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0015310 | RBH | 0.191910 | 1.650387 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0015230 | RBH | 1.963151 | 1.759814 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0015950 | RBH | 0.311799 | 0.268993 | 0.118010 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0015340 | RBH | 0.026019 | 0.703743 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G015470 | RBH | 0.304066 | 0.247476 | 0.689398 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0015570 | RBH | 0.0 | 0.0 | 0.547361 |
