Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_08g0015260 | OGI:08056760 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr08:20835500-20836423 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaaccgttggggaagactaaccccaccaccgccacggccatcgccgtcgggtcaccgaacaacacgccggcgatgacgcggaggacgaacacgacgatcttgaggagcttcttgagcttgctcctaggcctcccgttcttcttccgcagagccaccgccgcctgaaccggagccctgatcaccggcatgttccggccgccgccgccgccgtcggtgcggtggctgctgctgctgccggcgctagagctctcgtaggccatcctcttcacgcacgccacgtgcaggtgcacggcctcgccgtcgaggtcgtcggagctgtacgtccagtagTtgcggcggaggtgggggcggctcccctcctccgtgcagaggaggcaccgccggggagccgtgccgccggaggagagctcgaacgcggCcccgccgagagcgacgcggCccggcaggtgcgcgcagcaggggtggaggtcgaggtcgcggtcgaagcagtggtagacgaagccgcgcacgtcgtcgccgcacgcgtcgcagaccctgacgtcgccgtcgtcgggcgccgccgtaggcgggggctcgtggaggagcacgaacgacgcggctccacccttgaacagcgcgcgccccgccggcaggacgtccggcgccagcgcgcacggcgcgtggaggtcgaagtcgcaCccggcctcctcgcactcgtaccgcgcgcagccggcgccgccgagctccttgcagccgtcgcacacgaacctccccgCccccgcgtcgtcggcggtgatcagtttcagcttgtgcgccgggtggaacgggtggccgcggatctccgccggcgccggcgcatccttgtcgCTcttcaccttcatcggtgaggaagaaaggatggatcgtcaattcgaatccgtctgtctcactgcgctgctttcttt
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| CDS seq | atgaaggtgaagAGcgacaaggatgcgccggcgccggcggagatccgcggccacccgttccacccggcgcacaagctgaaactgatcaccgccgacgacgcggggGcggggaggttcgtgtgcgacggctgcaaggagctcggcggcgccggctgcgcgcggtacgagtgcgaggaggccggGtgcgacttcgacctccacgcgccgtgcgcgctggcgccggacgtcctgccggcggggcgcgcgctgttcaagggtggagccgcgtcgttcgtgctcctccacgagcccccgcctacggcggcgcccgacgacggcgacgtcagggtctgcgacgcgtgcggcgacgacgtgcgcggcttcgtctaccactgcttcgaccgcgacctcgacctccacccctgctgcgcgcacctgccggGccgcgtcgctctcggcgggGccgcgttcgagctctcctccggcggcacggctccccggcggtgcctcctctgcacggaggaggggagccgcccccacctccgccgcaActactggacgtacagctccgacgacctcgacggcgaggccgtgcacctgcacgtggcgtgcgtgaagaggatggcctacgagagctctagcgccggcagcagcagcagccaccgcaccgacggcggcggcggcggccggaacatgccggtgatcagggctccggttcaggcggcggtggctctgcggaagaagaacgggaggcctaggagcaagctcaagaagctcctcaagatcgtcgtgttcgtcctccgcgtcatcgccggcgtgttgttcggtgacccgacggcgatggccgtggcggtggtggggttagtcttccccaacggttag
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| Protein seq | MKVKSDKDAPAPAEIRGHPFHPAHKLKLITADDAGAGRFVCDGCKELGGAGCARYECEEAGCDFDLHAPCALAPDVLPAGRALFKGGAASFVLLHEPPPTAAPDDGDVRVCDACGDDVRGFVYHCFDRDLDLHPCCAHLPGRVALGGAAFELSSGGTAPRRCLLCTEEGSRPHLRRNYWTYSSDDLDGEAVHLHVACVKRMAYESSSAGSSSSHRTDGGGGGRNMPVIRAPVQAAVALRKKNGRPRSKLKKLLKIVVFVLRVIAGVLFGDPTAMAVAVVGLVFPNG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_08g0015260 | OsNaBo_08g0015260.01 | Chr08 | 20835500 | 20836423 | - | NAM | ||
| CDS seq | atgaaggtgaagAGcgacaaggatgcgccggcgccggcggagatccgcggccacccgttccacccggcgcacaagctgaaactgatcaccgccgacgacgcggggGcggggaggttcgtgtgcgacggctgcaaggagctcggcggcgccggctgcgcgcggtacgagtgcgaggaggccggGtgcgacttcgacctccacgcgccgtgcgcgctggcgccggacgtcctgccggcggggcgcgcgctgttcaagggtggagccgcgtcgttcgtgctcctccacgagcccccgcctacggcggcgcccgacgacggcgacgtcagggtctgcgacgcgtgcggcgacgacgtgcgcggcttcgtctaccactgcttcgaccgcgacctcgacctccacccctgctgcgcgcacctgccggGccgcgtcgctctcggcgggGccgcgttcgagctctcctccggcggcacggctccccggcggtgcctcctctgcacggaggaggggagccgcccccacctccgccgcaActactggacgtacagctccgacgacctcgacggcgaggccgtgcacctgcacgtggcgtgcgtgaagaggatggcctacgagagctctagcgccggcagcagcagcagccaccgcaccgacggcggcggcggcggccggaacatgccggtgatcagggctccggttcaggcggcggtggctctgcggaagaagaacgggaggcctaggagcaagctcaagaagctcctcaagatcgtcgtgttcgtcctccgcgtcatcgccggcgtgttgttcggtgacccgacggcgatggccgtggcggtggtggggttagtcttccccaacggttag
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| Protein seq | MKVKSDKDAPAPAEIRGHPFHPAHKLKLITADDAGAGRFVCDGCKELGGAGCARYECEEAGCDFDLHAPCALAPDVLPAGRALFKGGAASFVLLHEPPPTAAPDDGDVRVCDACGDDVRGFVYHCFDRDLDLHPCCAHLPGRVALGGAAFELSSGGTAPRRCLLCTEEGSRPHLRRNYWTYSSDDLDGEAVHLHVACVKRMAYESSSAGSSSSHRTDGGGGGRNMPVIRAPVQAAVALRKKNGRPRSKLKKLLKIVVFVLRVIAGVLFGDPTAMAVAVVGLVFPNG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 3.612382 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0404900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g31280 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0404900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0015470 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0015330 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0015260 | RBH | 0.0 | 2.412839 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0015560 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0015360 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0306600 | RBH | 0.045527 | 1.2767655 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0015390 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0328300 | RBH | 0.151841 | 5.5338125 | 0.0471165 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0014860 | RBH | 0.0 | 0.100152 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0014990 | RBH | 0.0 | 3.269524 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0014900 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0015610 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0015020 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G015110 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
