Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_08g0013940 | OGI:08052200 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr08:19108801-19112010 | ||||||||
| Gene Symbol | RLCK254, OsRLCK254 | ||||||||||
| DNA seq | gaggcttcaaccttaatgctgggtacttgagtacattaattactactgattgttaatgtgattatgctaactgatttttgaagcgagtgattatgctaattgctaattaaagtgaggtactactgttcagtgtgttcatcagtgctggctttgtgtgatcaaacgaggagaggcttctcctccgccatggccttctccttgctctccggccggagctccagcagcagcttcacgacggacctcatcgacgggcggttgatcgggaggctggacgcgcagagcagcgcgacgttgagcgccctccgcgtctcgtcgcgcggcgcgccggcgagcctcgcgtcgagcacgcggtcgacgccgtcgcgctcgacgccgccgcacacccacctgacgaggtccttctccccgagctccGgccccgccggcgccttgccGgtgaggagctccagcatcaccacgccgaagctgtacacgtcgctcttctccgtgatacgcagcgtgtacgagtactctgggaaatcaagaatcgttagcgggcgccatggcgatggcgatcgaggtgcgcaatgattaactcaccgggggcaatgtagccgcaggagccggcgatggcggacacggcggtgggcggcgcggcggagacggccctggcgacgccgaagtcggcgaccttggcgcggaggtcggcgtcgaGgaggatgttgttggacttgacgtcgcggtgcacgatcggcggtgcgcagtcgtggtggaggtaggagagaccctcggcggcgtcgaccatgatgcggtgccgcgccggccAgtcgaggaggccgcccttgccgccgtggaggaggtcgccgaggctgccgttgggCatgtactcgtagacgagcagccgccggtcgccgctgctgaggctgcaccacagcttcacgatgttcttgtgccgtatcctccccagcgtcgccacctccgcctcgaacgtgtccttgccgccgccgccgccgccgccgccgccgccgccggcttccatggccgccgccttcttcgccgcgccgccgttagcccagagcttcttgacggcgacgacggcgccgtcgtcgccgccgcgggcgccgttcccgaggacggccttgtacaccttgcccgctgcgcccgtgccgaccacgttgtcctcgtcgtcgaggcagctcaggatgtcctcctcgtcgaactCcgccttgtggaacgacgtgaccacccacctcgacttctcgccggcggcgtcctccgtgctccacctcctttgactcctgtacctgtgggcgaaccacgcggcgccgagcagcaggatgacgccggcgacggcgacggtgacgctcccgacaaggccgcggcggccggcgcgggctctgcggccgctcgagcacgaaccgccggtgcacagccccggattgccaaggaagctgtccttgtacatctcgccggcgaacagaggAggcaggacgccggcgagccggttgttcgacaggttgagcaggctcagcttaaggttctcgagttgcaccggcacgccgccggtgagctcgttgttcgacaggtcgagcgagttgagcaccggcagatcgccgagctcggcggggatgtttccggtgaggcggttgtcggcgaggtcgagctgcgtcagcttctgccaccgtcgaacacctcgcggcagctcgccggagagcgagttgttcCTcaaatcaagccggccgagcgtggtgaccacggtcaacgacgccggcaatggcccggagaacacgttgttggaagccgacagctcgaacaggttcggcaagctgcctagctccggcggcagcgcgccggcgaagcggttgtcagatatcagcagctgcgacaggttcctcgccgtggcaatggcgggcgcgacggcgccggacagggcgttcccggcgagctccagcaggtacaggtgcggaaggccccaCatgtccggcggcacggcgccggagagccggttgTtcggcagccgcacccgcgtcagcgtccggcattgccccagctccgccggaatcgggccgacgagctcgttgttcagcatgagaagctgctccagcttcccggcgctgcacagcgtcgccggaatctcgccggagatacggttgtccgacaagtccaagaactcaagcgggctcttcttcccgaactccggcggcaactccccgaccagccggttggtgaacagcctgaggtcgttgagcgccgccgcgtcggccaccgtcgccggcacgcgtccggtaagctcgttctggtacaggtggaggctctccagcctcggtgcgaggaacaggtcggccggtatctcgccggagagctggttcatggcggcgtcgaagaaccgcagcttcttgagcgccgacatcccctccggcaagctcccggtgagctggttcgagtagagctcgagctggacgacgctctccaaccctccgatgctgctcgggatctcgccggtgaggttgttcgtcgagaggtcgaggttgacgaggttcttcaggctcccgatcgacggcgggatatctccgacgaggttgcacccGgccagccacagcacctgtagcctccggattccggtgaacgtctccggcaacggcgacggcgcgaactggttgtacgcgaggaggagctcctcgagggcgctcacgttcgccaagaacgccgggagctcgccggacagctcgttcccggccaggctgagcgtcaagagagacgggaaccccgcgccgtagctcctcgggacctcgccggagaacccattcccggcgagatcaaggtgcctcagcgacggcatcgcggcgaggcagccgggcaacggcccggtgaggtcattgtacgacaggtcgagccgcgccagcgaccggagctcgcacagcggcgccgggaactcgccggcgagggagaggttggagaggagcacggcggcgatggcggcggaggaggaggacgacgggttggagcagaggaggtgcggccatcggcacggggagagggacggggacaggccagggtcccacgcggcgagcgcggaggacgggtcggagagcgcggccttggcggcgaagaggttggcgaagtcggcggggaaggaggcggcgccggcgccggcggcgagggcgaggaggaggaggagcaggggagtcatgggggaagcgtggagtggagcgaagtgggagtgggagtagt
More
|
||||||||||
| CDS seq | atgactcccctgctcctcctcctcctcgccctcgccgccggcgccggcgccgcctccttccccgccgacttcgccaacctcttcgccgccaaggccgcgctctccgacccgtcctccgcgctcgccgcgtgggaccctggcctgtccccgtccctctccccgtgccgatggccgcacctcctctgctccaacccgtcgtcctcctcctccgccgccatcgccgccgtgctcctctccaacctctccctcgccggcgagttcccggcgccgctgtgcgagctccggtcgctggcgcggctcgacctgtcgtacaatgacctcaccgggccgttgcccggctgcctcgccgcgatgccgtcgctgaggcaccttgatctcgccgggaatgggttctccggcgaggtcccgaggagctacggcgcggggttcccgtctctcttgacgctcagcctggccgggaacgagctgtccggcgagctcccggcgttcttggcgaacgtgagcgccctcgaggagctcctcctcgcgtacaaccagttcgcgccgtcgccgttgccggagacgttcaccggaatccggaggctacaggtgctgtggctggcCgggtgcaacctcgtcggagatatcccgccgtcgatcgggagcctgaagaacctcgtcaacctcgacctctcgacgaacaacctcaccggcgagatcccgagcagcatcggagggttggagagcgtcgtccagctcgagctctactcgaaccagctcaccgggagcttgccggaggggatgtcggcgctcaagaagctgcggttcttcgacgccgccatgaaccagctctccggcgagataccggccgacctgttcctcgcaccgaggctggagagcctccacctgtaccagaacgagcttaccggacgcgtgccggcgacggtggccgacgcggcggcgctcaacgacctcaggctgttcaccaaccggctggtcggggagttgccgccggagttcgggaagaagagcccgcttgagttcttggacttgtcggacaaccgtatctccggcgagattccggcgacgctgtgcagcgccgggaagctggagcagcttctcatgctgaacaacgagctcgtcggcccgattccggcggagctggggcaatgccggacgctgacgcgggtgcggctgccgaAcaaccggctctccggcgccgtgccgccggacatGtggggccttccgcacctgtacctgctggagctcgccgggaacgccctgtccggcgccgtcgcgcccgccattgccacggcgaggaacctgtcgcagctgctgatatctgacaaccgcttcgccggcgcgctgccgccggagctaggcagcttgccgaacctgttcgagctgtcggcttccaacaacgtgttctccgggccattgccggcgtccgtcaccgtcgccgtcgccggcgtcatcctgctgctcggcgccgcgtggttcgcccacaggtacaggagtcaaaggaggtggagcacggaggacgccgccggcgagaagtcgaggtgggtggtcacgtcgttccacaaggcgGagttcgacgaggaggacatcctgagctgcctcgacgacgaggacaacgtggtcggcacgggcgcagcgggcaaggtgtacaaggccgtcctcgggaacggcgcccgcggcggcgacgacggcgccgtcgtcgccgtcaagaagctctgggctaacggcggcgcggcgaagaaggcggcggccatggaagccggcggcggcggcggcggcggcggcggcggcggcaaggacacgttcgaggcggaggtggcgacgctggggaggatacggcacaagaacatcgtgaagctgtggtgcagcctcagcagcggcgaccggcggctgctcgtctacgagtacatGcccaacggcagcctcggcgacctcctccacggcggcaagggcggcctcctcgacTggccggcgcggcaccgcatcatggtcgacgccgccgagggtctctcctacctccaccacgactgcgcaccgccgatcgtgcaccgcgacgtcaagtccaacaacatcctcCtcgacgccgacctccgcgccaaggtcgccgacttcggcgtcgccagggccgtctccgccgcgccgcccaccgccgtgtccgccatcgccggctcctgcggctacattgcccccgagtactcgtacacgctgcgtatcacggagaagagcgacgtgtacagcttcggcgtggtgatgctggagctcctcacCggcaaggcgccggcggggcCggagctcggggagaaggacctcgtcaggtgggtgtgcggcggcgtcgagcgcgacggcgtcgaccgcgtgctcgacgcgaggctcgccggcgcgccgcgcgacgagacgcggagggcgctcaacgtcgcgctgctctgcgcgtccagcctcccgatcaaccgcccgtcgatgaggtccgtcgtgaagctgctgctggagctccggccggagagcaaggagaaggccatggcggaggagaagcctctcctcgtttga
More
|
||||||||||
| Protein seq | MTPLLLLLLALAAGAGAASFPADFANLFAAKAALSDPSSALAAWDPGLSPSLSPCRWPHLLCSNPSSSSSAAIAAVLLSNLSLAGEFPAPLCELRSLARLDLSYNDLTGPLPGCLAAMPSLRHLDLAGNGFSGEVPRSYGAGFPSLLTLSLAGNELSGELPAFLANVSALEELLLAYNQFAPSPLPETFTGIRRLQVLWLAGCNLVGDIPPSIGSLKNLVNLDLSTNNLTGEIPSSIGGLESVVQLELYSNQLTGSLPEGMSALKKLRFFDAAMNQLSGEIPADLFLAPRLESLHLYQNELTGRVPATVADAAALNDLRLFTNRLVGELPPEFGKKSPLEFLDLSDNRISGEIPATLCSAGKLEQLLMLNNELVGPIPAELGQCRTLTRVRLPNNRLSGAVPPDMWGLPHLYLLELAGNALSGAVAPAIATARNLSQLLISDNRFAGALPPELGSLPNLFELSASNNVFSGPLPASVTVAVAGVILLLGAAWFAHRYRSQRRWSTEDAAGEKSRWVVTSFHKAEFDEEDILSCLDDEDNVVGTGAAGKVYKAVLGNGARGGDDGAVVAVKKLWANGGAAKKAAAMEAGGGGGGGGGGGKDTFEAEVATLGRIRHKNIVKLWCSLSSGDRRLLVYEYMPNGSLGDLLHGGKGGLLDWPARHRIMVDAAEGLSYLHHDCAPPIVHRDVKSNNILLDADLRAKVADFGVARAVSAAPPTAVSAIAGSCGYIAPEYSYTLRITEKSDVYSFGVVMLELLTGKAPAGPELGEKDLVRWVCGGVERDGVDRVLDARLAGAPRDETRRALNVALLCASSLPINRPSMRSVVKLLLELRPESKEKAMAEEKPLLV |
||||||||||
| Function | Receptor-like protein kinase HSL1 [UniProtKB/Swiss-Prot:Q9SGP2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_08g0013940 | OsNaBo_08g0013940.01 | Chr08 | 19108801 | 19112010 | - | NAM | ||
| CDS seq | atgactcccctgctcctcctcctcctcgccctcgccgccggcgccggcgccgcctccttccccgccgacttcgccaacctcttcgccgccaaggccgcgctctccgacccgtcctccgcgctcgccgcgtgggaccctggcctgtccccgtccctctccccgtgccgatggccgcacctcctctgctccaacccgtcgtcctcctcctccgccgccatcgccgccgtgctcctctccaacctctccctcgccggcgagttcccggcgccgctgtgcgagctccggtcgctggcgcggctcgacctgtcgtacaatgacctcaccgggccgttgcccggctgcctcgccgcgatgccgtcgctgaggcaccttgatctcgccgggaatgggttctccggcgaggtcccgaggagctacggcgcggggttcccgtctctcttgacgctcagcctggccgggaacgagctgtccggcgagctcccggcgttcttggcgaacgtgagcgccctcgaggagctcctcctcgcgtacaaccagttcgcgccgtcgccgttgccggagacgttcaccggaatccggaggctacaggtgctgtggctggcCgggtgcaacctcgtcggagatatcccgccgtcgatcgggagcctgaagaacctcgtcaacctcgacctctcgacgaacaacctcaccggcgagatcccgagcagcatcggagggttggagagcgtcgtccagctcgagctctactcgaaccagctcaccgggagcttgccggaggggatgtcggcgctcaagaagctgcggttcttcgacgccgccatgaaccagctctccggcgagataccggccgacctgttcctcgcaccgaggctggagagcctccacctgtaccagaacgagcttaccggacgcgtgccggcgacggtggccgacgcggcggcgctcaacgacctcaggctgttcaccaaccggctggtcggggagttgccgccggagttcgggaagaagagcccgcttgagttcttggacttgtcggacaaccgtatctccggcgagattccggcgacgctgtgcagcgccgggaagctggagcagcttctcatgctgaacaacgagctcgtcggcccgattccggcggagctggggcaatgccggacgctgacgcgggtgcggctgccgaAcaaccggctctccggcgccgtgccgccggacatGtggggccttccgcacctgtacctgctggagctcgccgggaacgccctgtccggcgccgtcgcgcccgccattgccacggcgaggaacctgtcgcagctgctgatatctgacaaccgcttcgccggcgcgctgccgccggagctaggcagcttgccgaacctgttcgagctgtcggcttccaacaacgtgttctccgggccattgccggcgtccgtcaccgtcgccgtcgccggcgtcatcctgctgctcggcgccgcgtggttcgcccacaggtacaggagtcaaaggaggtggagcacggaggacgccgccggcgagaagtcgaggtgggtggtcacgtcgttccacaaggcgGagttcgacgaggaggacatcctgagctgcctcgacgacgaggacaacgtggtcggcacgggcgcagcgggcaaggtgtacaaggccgtcctcgggaacggcgcccgcggcggcgacgacggcgccgtcgtcgccgtcaagaagctctgggctaacggcggcgcggcgaagaaggcggcggccatggaagccggcggcggcggcggcggcggcggcggcggcggcaaggacacgttcgaggcggaggtggcgacgctggggaggatacggcacaagaacatcgtgaagctgtggtgcagcctcagcagcggcgaccggcggctgctcgtctacgagtacatGcccaacggcagcctcggcgacctcctccacggcggcaagggcggcctcctcgacTggccggcgcggcaccgcatcatggtcgacgccgccgagggtctctcctacctccaccacgactgcgcaccgccgatcgtgcaccgcgacgtcaagtccaacaacatcctcCtcgacgccgacctccgcgccaaggtcgccgacttcggcgtcgccagggccgtctccgccgcgccgcccaccgccgtgtccgccatcgccggctcctgcggctacattgcccccgagtactcgtacacgctgcgtatcacggagaagagcgacgtgtacagcttcggcgtggtgatgctggagctcctcacCggcaaggcgccggcggggcCggagctcggggagaaggacctcgtcaggtgggtgtgcggcggcgtcgagcgcgacggcgtcgaccgcgtgctcgacgcgaggctcgccggcgcgccgcgcgacgagacgcggagggcgctcaacgtcgcgctgctctgcgcgtccagcctcccgatcaaccgcccgtcgatgaggtccgtcgtgaagctgctgctggagctccggccggagagcaaggagaaggccatggcggaggagaagcctctcctcgtttga
More
|
|||||||
| Protein seq | MTPLLLLLLALAAGAGAASFPADFANLFAAKAALSDPSSALAAWDPGLSPSLSPCRWPHLLCSNPSSSSSAAIAAVLLSNLSLAGEFPAPLCELRSLARLDLSYNDLTGPLPGCLAAMPSLRHLDLAGNGFSGEVPRSYGAGFPSLLTLSLAGNELSGELPAFLANVSALEELLLAYNQFAPSPLPETFTGIRRLQVLWLAGCNLVGDIPPSIGSLKNLVNLDLSTNNLTGEIPSSIGGLESVVQLELYSNQLTGSLPEGMSALKKLRFFDAAMNQLSGEIPADLFLAPRLESLHLYQNELTGRVPATVADAAALNDLRLFTNRLVGELPPEFGKKSPLEFLDLSDNRISGEIPATLCSAGKLEQLLMLNNELVGPIPAELGQCRTLTRVRLPNNRLSGAVPPDMWGLPHLYLLELAGNALSGAVAPAIATARNLSQLLISDNRFAGALPPELGSLPNLFELSASNNVFSGPLPASVTVAVAGVILLLGAAWFAHRYRSQRRWSTEDAAGEKSRWVVTSFHKAEFDEEDILSCLDDEDNVVGTGAAGKVYKAVLGNGARGGDDGAVVAVKKLWANGGAAKKAAAMEAGGGGGGGGGGGKDTFEAEVATLGRIRHKNIVKLWCSLSSGDRRLLVYEYMPNGSLGDLLHGGKGGLLDWPARHRIMVDAAEGLSYLHHDCAPPIVHRDVKSNNILLDADLRAKVADFGVARAVSAAPPTAVSAIAGSCGYIAPEYSYTLRITEKSDVYSFGVVMLELLTGKAPAGPELGEKDLVRWVCGGVERDGVDRVLDARLAGAPRDETRRALNVALLCASSLPINRPSMRSVVKLLLELRPESKEKAMAEEKPLLV
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 1.441136 | 6.604444 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0376300 | RBH | 0.0 | 0.0 | 0.823436 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g28870 | RBH | 0.0 | 0.0 | 0.211709 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0376300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0014230 | RBH | 0.0 | 1.831220 | 9.254065 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0014100 | RBH | 0.000000 | 0.760853 | 0.628168 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0014120 | RBH | 0.0 | 0.711604 | 6.847241 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0014320 | RBH | 0.027684 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0014130 | RBH | 0.000000 | 5.669790 | 11.982450 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0278900 | RBH | 1.6909785 | 12.3337035 | 2.0909695 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0014180 | RBH | 0.111366 | 0.103335 | 0.601989 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0301600 | RBH | 1.238095 | 5.4802355 | 15.1125575 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0013690 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0013750 | RBH | 0.068662 | 3.339387 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0013640 | RBH | 0.0 | 2.203150 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0014430 | RBH | 0.000000 | 0.000000 | 0.876243 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0013790 | RBH | 0.0 | 1.461117 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G013770 | RBH | 0.143592 | 0.542760 | 2.523040 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0014060 | RBH | 0.0 | 0.0 | 0.0 |
