Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_08g0012280 | OGI:08044550 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr08:16130685-16134883 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atcctctccccccatccccaCcccacccgcttcactctccccatcgaccaaaccgccaccgccaCcatgctctcctcctcctcctccgccgccgccgccgccgtcgtgctcaccaccaccagcggCcgcgcgcccctcctccacctccccaggacgccacgccctactaccgccgcaaggatcgccgccgcgcccgactcctccagagccagagccGgtggcgcgcctctcctcctcggctccgccgttccccGgcggcgtggctgggcgctGgtatgtcgggactcctccctccctggcccacctggagtggaccccgtggcgGAggaggaagagaacaGgaagaagaccgaggcggtggcggccgccgcggcggcccggattgccagtagcggcggcggcggcggaggaggaggagggagtctcagcgactggacgacatcggtgcttatcttcggaatctggGCcgggctcatgtactacatcttccaactcgcgcccaaCcagacgccggtacggacgaacacgttgcttgccttttgcgcttgcgtgaatccgAatcgtttcttggatagcactcagtgagatcctaccgccattgttgcgaatgctGgatagctttaccattattattatcttacacatgacgcatactgtgctgtgttctttcgatgttctccctacctgcaaatttccccaatgAatcattgaatcctcaccccgcttggatGggttatatgataatctgcaaagttgacagtgattaatgctgtgagatttccttgcatatgATatagtttcaagTttgtagttgatctcaaatcgtaccatggtgcctagttAaaaaataaatagaagtgAagagaTgccagtattattaggcgactatttaatcctagatggagctggaaaaggtatccattgattgttagttatttccatattagtaaaatttctcttgtatgctgatagtcatgtattGtgtaacttgttaaatcagcattttgtggaaaatagccaatgatAaatgattattactgtgtacagcgtgtaaagtgttttatgaaattcttcaatatatcaatcatttctcaagaaTttggtttagtcttctctattgcgtattcaatgcacaagtgaccaagaccatgtAaaagtggaaatggtgactaactgttgcaggtcatttgagtgaaaTttggacaagtcttgttttctagaatgctagttcttgtaatactaataagtagTAtatttgttaaaatcttagttgctgcaattattggcttcctAaaactgttgaaccttcagaaagggtctctagttgttatatagaacaaaATtacatgttgaatacctgaaccttcatcatcatcgatctcattttaaatctaaagcaacaagtAtattggcgttgTtttcttcttaatgcAaaccactcattctccactccattctggtgcagtacagagacacatacttcttgcaaaagctttgtAatctgaaaggcgacgatggcttccgaatgaatgaTGttcttgtgcctctatggtacataATgggcctctggccactagtgtacagcatgctgcttcttcctactggcagaaggtaaatgaatctgcAtatttctactcaaggcaacctccttttaTtgtccactggaattgcagccaagaaccatagaatgtttcatatgtaatttgaaagtatattttttcTAtgctttaactgatgtatctaattcagtattttaagataaTtttttgttatatttctgaaccgatgctaccattggatAaaaagataatatattaattctgctcattatattaacataattattatccagttaaacctctataTttgaaggcaccactacccttttttacctggtggacaacacatcacatttcaatcactacgtgaatcATatgcatttcattaaagatgattgtgatcaatacttagtcaagcatttggcccttttattatgattacgatgaatttgcataaatttgggaatatcagtacctgctttcctgatctactaatggtttaagctttttgtggtaaccactttcttatgttctgcttttcttacttgacacatctaaacaagcacaagaatctattttttagtgacAtctttagtaaaacttaattttcttgagatcactcatgctgagaaacaattgtattgcagttcaaaaagcAagattcctgtctggccattcctaattctttcatgcattGggggagcatatgccctgattccctactttgttctatggaagcctcctccacctccgattgatgagGAagaaaTtggacaatggccactgaagtttcttgagtcAaaattgactgcaggagtacgttgtagttttaccattgcttaaattctcaaaagcataattatttAagtagcttgaggcacaaatgatgtatcgtgatattctagctggtcaacttcttaacttctgacAaaatttctttccAatcatgttgcaggtaacgtttgctgtGggccttgggctgaTtgtctatgcagccaaagctggtggtgaagattggcaggaattcattcgatactttcgggaaagcaagttggtaagtactccgggctacacaatatgattcagccccaagctagcgatgaacaaagaagctcatcatggcataTtttgtagtaacTttttggcacacatgcaaccTttttgtagttacacaagatatactccctctgtcccaagacataaagTAttttgaccggatgggacacAtcctagtactatgAatctggacaagtaggatgcgtctcatccggCcaaagtaccttAtaTtttgggatggagTAtgttatttcagttttatcaGtaaccatgctaactttcttggaaatacaACccctcaaagTttttgcaattacatgacccagtaccagaagccattgccttgtgccaccatctagtttatactaattatataccttgaattcattggaaccaatttcaacacaagaaatacttatGttatcccaatttaggcttgaagcctgtgaggcaGgtacatttaaGaaaaaaaaatgaaggcactgggTttgaagtagagaaagcacggatgaacttaagataaaaaatgttaagcacaTtttggtttagTCtgttttAtatgattccAagcttttaggtgacttattccatggatcatcttgtactttgtcttggtgtcaaactaagaaggttttagcatcaaactaatttccatttgtttcatctcAAatatcagatacatatcacctgccttgatttctgtttgctctcggccttctcaccattttgggtctacaacgacttgacagcaaggcgatggtacggacacttgccctgaaactcactttgtgtagagaactgtcatgaatgacatcgtaccttacctaatacgaaaataccaaacacatgcattggatgacctGggtgaattattatttggctgacaggaaaaatggctcttggcttctgcccttggcacttatcccTtttgtgggaccttcattgtatcTtttgctgaggccatcactctcttctctgctagcagcaacaggtccatcagatgatAaaacacagtaataacaattatgaagctgagtattgatgaGgttttggttacGAggagatgacatggtagaaaggttaagaaccacttatGgaaattggaTtggaCagatttagatgccaatctggagcattccacaaagttgacttgttagtaatgcatttgaatggcaaaagtatgaataatgtccttactcagcatggtcagcatctgaattcgtcagaaaattttcaacttggaaggcattggagtaatcagcaatgcttaaatCcctggtgaacattctgcattCtccccagcgtacatatacaactggtaggaccttttgctactgttgtccatgtatagaaaATtttgaccttgtgacagtggtccatatgtaagaagccatgGTgctagtacatgatcatgaatgataggctacAaatttattgttacagccaaagaataacaggattcTtttggcaccaactacacttagaattacattgcaacaggtGtttactgctctatatcttcaaaagcaatgcgcctatcagccttgtaaGgattgcactgAaccacctgcattttgttacaga
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| CDS seq | atgctctcctcctcctcctccgccgccgccgccgccgtcgtgctcaccaccaccagcggCcgcgcgcccctcctccacctccccaggacgccacgccctactaccgccgcaaggatcgccgccgcgcccgactcctccagagccagagccGgtggcgcgcctctcctcctcggctccgccgttccccGgcggcgtggctgggcgctGgtatgtcgggactcctccctccctggcccacctggagtggaccccgtggcgGAggaggaagagaacaGgaagaagaccgaggcggtggcggccgccgcggcggcccggattgccagtagcggcggcggcggcggaggaggaggagggagtctcagcgactggacgacatcggtgcttatcttcggaatctggGCcgggctcatgtactacatcttccaactcgcgcccaaCcagacgccgtacagagacacatacttcttgcaaaagctttgtAatctgaaaggcgacgatggcttccgaatgaatgaTGttcttgtgcctctatggtacataATgggcctctggccactagtgtacagcatgctgcttcttcctactggcagaagttcaaaaagcAagattcctgtctggccattcctaattctttcatgcattGggggagcatatgccctgattccctactttgttctatggaagcctcctccacctccgattgatgagGAagaaaTtggacaatggccactgaagtttcttgagtcAaaattgactgcaggagtaacgtttgctgtGggccttgggctgaTtgtctatgcagccaaagctggtggtgaagattggcaggaattcattcgatactttcgggaaagcaagttgatacatatcacctgccttgatttctgtttgctctcggccttctcaccattttgggtctacaacgacttgacagcaaggcgatggaaaaatggctcttggcttctgcccttggcacttatcccTtttgtgggaccttcattgtatcTtttgctgaggccatcactctcttctctgctagcagcaacaggtccatcagatgatAaaacacagtaa
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| Protein seq | MLSSSSSAAAAAVVLTTTSGRAPLLHLPRTPRPTTAARIAAAPDSSRARAGGAPLLLGSAVPRRRGWALVCRDSSLPGPPGVDPVAEEEENRKKTEAVAAAAAARIASSGGGGGGGGGSLSDWTTSVLIFGIWAGLMYYIFQLAPNQTPYRDTYFLQKLCNLKGDDGFRMNDVLVPLWYIMGLWPLVYSMLLLPTGRSSKSKIPVWPFLILSCIGGAYALIPYFVLWKPPPPPIDEEEIGQWPLKFLESKLTAGVTFAVGLGLIVYAAKAGGEDWQEFIRYFRESKLIHITCLDFCLLSAFSPFWVYNDLTARRWKNGSWLLPLALIPFVGPSLYLLLRPSLSSLLAATGPSDDKTQ |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_08g0012280 | OsNaBo_08g0012280.01 | Chr08 | 16130685 | 16134883 | + | NAM | ||
| CDS seq | atgctctcctcctcctcctccgccgccgccgccgccgtcgtgctcaccaccaccagcggCcgcgcgcccctcctccacctccccaggacgccacgccctactaccgccgcaaggatcgccgccgcgcccgactcctccagagccagagccGgtggcgcgcctctcctcctcggctccgccgttccccGgcggcgtggctgggcgctGgtatgtcgggactcctccctccctggcccacctggagtggaccccgtggcgGAggaggaagagaacaGgaagaagaccgaggcggtggcggccgccgcggcggcccggattgccagtagcggcggcggcggcggaggaggaggagggagtctcagcgactggacgacatcggtgcttatcttcggaatctggGCcgggctcatgtactacatcttccaactcgcgcccaaCcagacgccgtacagagacacatacttcttgcaaaagctttgtAatctgaaaggcgacgatggcttccgaatgaatgaTGttcttgtgcctctatggtacataATgggcctctggccactagtgtacagcatgctgcttcttcctactggcagaagttcaaaaagcAagattcctgtctggccattcctaattctttcatgcattGggggagcatatgccctgattccctactttgttctatggaagcctcctccacctccgattgatgagGAagaaaTtggacaatggccactgaagtttcttgagtcAaaattgactgcaggagtaacgtttgctgtGggccttgggctgaTtgtctatgcagccaaagctggtggtgaagattggcaggaattcattcgatactttcgggaaagcaagttgatacatatcacctgccttgatttctgtttgctctcggccttctcaccattttgggtctacaacgacttgacagcaaggcgatggaaaaatggctcttggcttctgcccttggcacttatcccTtttgtgggaccttcattgtatcTtttgctgaggccatcactctcttctctgctagcagcaacaggtccatcagatgatAaaacacagtaa
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| Protein seq | MLSSSSSAAAAAVVLTTTSGRAPLLHLPRTPRPTTAARIAAAPDSSRARAGGAPLLLGSAVPRRRGWALVCRDSSLPGPPGVDPVAEEEENRKKTEAVAAAAAARIASSGGGGGGGGGSLSDWTTSVLIFGIWAGLMYYIFQLAPNQTPYRDTYFLQKLCNLKGDDGFRMNDVLVPLWYIMGLWPLVYSMLLLPTGRSSKSKIPVWPFLILSCIGGAYALIPYFVLWKPPPPPIDEEEIGQWPLKFLESKLTAGVTFAVGLGLIVYAAKAGGEDWQEFIRYFRESKLIHITCLDFCLLSAFSPFWVYNDLTARRWKNGSWLLPLALIPFVGPSLYLLLRPSLSSLLAATGPSDDKTQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.103853 | 0.000000 | 3.871937 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0345400 | RBH | 9.058471 | 9.480426 | 3.821084 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g25700 | RBH | 5.966734 | 6.106585 | 1.010857 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0345400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0012550 | RBH | 0.982014 | 2.968477 | 2.001437 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0012660 | RBH | 0.648415 | 0.0 | 3.021333 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0012730 | RBH | 2.735317 | 0.0 | 6.284967 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0012650 | RBH | 0.239091 | 0.118638 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0012470 | RBH | 26.304012 | 4.563232 | 8.270231 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0240300 | RBH | 6.476002 | 2.267845 | 2.1930955 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0012580 | RBH | 0.576333 | 0.0 | 1.234532 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0255000 | RBH | 14.6349885 | 5.257801 | 7.8729005 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0012060 | RBH | 0.296245 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0012250 | RBH | 1.603199 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0012120 | RBH | 12.613878 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0012910 | RBH | 2.087230 | 0.0 | 1.509881 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0012130 | RBH | 0.670065 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G012330 | RBH | 0.979464 | 0.654097 | 1.871085 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
