Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_08g0010230 | OGI:08033550 | 14/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr08:12378774-12380565 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | caatagttaattatttgtactctattatcaatattgtcattgtgtgcctcggttgattcctggacgagggtttaacacacatgtaagcgtttggaattttggatagaaattccgggcgtgacacttgctgccgcagatcattggtgcaacctttcatccaatctttccattgattggtgactatggtggtggcaagtgcttcttgacatttagtgagcctcaaaagcaaaaggtagtgagaagcaaaacgagtttttttaatcttctgtaggtccaactttgaattacttctaaacattgcgaggcaatgccgatgattctgaaaaaacttgacaatagctttccctttgctgtatgtatcactcaTCcagtcaaatttttttgagaaatctttgaatataaggttcaaggtgtgagtgacacatggcccccagaaaatgtgctcatgcacggatgcacctgtacaatgatgggggaaaactagaattagagataaaatgaaatgtttcatatctgcatagaaaaaaaaattgtactgtatagtctatactatatagtgtataactctatactctcaactgtcaagtttgaactttgaactttgaagttggaattttggaaaaacttactttctcaatttctttgcctgcttctttgcagttagatgcattgtctgttactacttgaaggacatttcctggtccaatttcatcaatagccttcaataagaactctacaatagcttcccctgttttttcaactccagagaaatcttctgcatatagaaagcatgaacctcggctattagatgcaatcacattgataagtggtttgttctttagatcagtccatccatcagacacaacagaaacaccttgtgtgcacctgcttgatgcaaaaataagagaagtgatagtcaataactcaatattcagttaaaaggttaataaatttgcacctgtacaaggatgaaaaaggttagcaactgataattaccatgtacttttgactattgccaaatcatgttctacgcttcttttgcatgcatctagtagagttgtccttgccttctcagaggatggacctttgtatccactgggagctttgttaatggctgtgaccatttcagcaaattgtgggcttctcaatatattaaacggaatgccgttagcacataaaaatttaactattttcatatctgcatcatgtcttttcccttctccaaaacaatcagccaacggattgccctgcctagtaccaactgatttcgaaccatctccattttgttcagcttttttaacctactcaaatgacaaggatgccaaaataagacacatttctacttgctaagaaagttgaagagtaaagggttaaaggaatacttttgtaccttatccctcagagctttgcacttgataggatcttttagtagcgcaacacagcgtgctacctctgcttttttgccaggtggaggcccaagcaaatgaatacgaattctcgttaagctacccttcaatttcttctggcaatgcttacactgccactgttttgttccactgtcgttctttccttttggtgccttaacgacagttacttcatcgtaaagagggtttacagtaccactctttttagatgatcctgcatcttcttcctcggagccatcagccccaagttcatcgttcgtgttactgtcatcttcgtggacgacaacgtctgcatcagctcctcctacatcttcatgtgctgcgatctcagatcgcctgcgtttcttggaaccggatccaaatgccat
More
|
||||||||||
| CDS seq | atggcatttggatccggttccaagaaacgcaggcgatctgagatcgcagcacatgaagatgtaggaggagctgatgcagacgttgtcgtccacgaagatgacagtaacacgaacgatgaacttggggctgatggctccgaggaagaagatgcaggatcatctaaaaagagtggtactgtaaaccctctttacgatgaagtaactgtcgttaaggcaccaaaaggaaagaacgacagtggaacaaaacagtggcagtgtaagcattgccagaagaaattgaagggtagcttaacgagaattcgtattcatttgcttgggcctccacctggcaaaaaagcagaggtagcacgctgtgttgcgctactaaaagatcctatcaagtgcaaagctctgagggataaggttaaaaaagctgaacaaaatggagatggttcgaaatcagttggtactaggcagggcaatccgttggctgattgttttggagaagggaaaagacatgatgcagatatgaaaatagttaaatttttatgtgctaacggcattccgtttaatatattgagaagcccacaatttgctgaaatggtcacagccattaacaaagctcccagtggatacaaaggtccatcctctgagaaggcaaggacaactctactagatgcatgcaaaagaagcgtagaacatgatttggcaatagtcaaaagtacatggtgcacacaaggtgtttctgttgtgtctgatggatggactgatctaaagaacaaaccacttatcaatgtgattgcatctaatagccgaggtgcatccgtgcatgagcacattttctgggggccatgtgtcactcacaccttgaaccttatattcaaagatttctcaaaaaaatttgactgGAtgagtgatacatacagcaaagggaaagctattgtcaagttttttcagaatcatcggcattgcctcgcaatgtttagaagtaattcaaagttggacctacagaagattaaaaaaactcgttttgcttctcactaccttttgcttttgaggctcactaaatgtcaagaagcacttgccaccaccatagtcaccaatcaatggaaagattggatgaaaggttgcaccaatgatctgcggcagcaagtgtcacgcccggaatttctatccaaaattccaaacgcttacatgtgtgttaaaccctcgtccaggaatcaaccgaggcacacaatgacaatattgataatagagtacaaataa
More
|
||||||||||
| Protein seq | MAFGSGSKKRRRSEIAAHEDVGGADADVVVHEDDSNTNDELGADGSEEEDAGSSKKSGTVNPLYDEVTVVKAPKGKNDSGTKQWQCKHCQKKLKGSLTRIRIHLLGPPPGKKAEVARCVALLKDPIKCKALRDKVKKAEQNGDGSKSVGTRQGNPLADCFGEGKRHDADMKIVKFLCANGIPFNILRSPQFAEMVTAINKAPSGYKGPSSEKARTTLLDACKRSVEHDLAIVKSTWCTQGVSVVSDGWTDLKNKPLINVIASNSRGASVHEHIFWGPCVTHTLNLIFKDFSKKFDWMSDTYSKGKAIVKFFQNHRHCLAMFRSNSKLDLQKIKKTRFASHYLLLLRLTKCQEALATTIVTNQWKDWMKGCTNDLRQQVSRPEFLSKIPNAYMCVKPSSRNQPRHTMTILIIEYK |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_08g0010230 | OsNaBo_08g0010230.01 | Chr08 | 12378774 | 12380565 | - | NAM | ||
| CDS seq | atggcatttggatccggttccaagaaacgcaggcgatctgagatcgcagcacatgaagatgtaggaggagctgatgcagacgttgtcgtccacgaagatgacagtaacacgaacgatgaacttggggctgatggctccgaggaagaagatgcaggatcatctaaaaagagtggtactgtaaaccctctttacgatgaagtaactgtcgttaaggcaccaaaaggaaagaacgacagtggaacaaaacagtggcagtgtaagcattgccagaagaaattgaagggtagcttaacgagaattcgtattcatttgcttgggcctccacctggcaaaaaagcagaggtagcacgctgtgttgcgctactaaaagatcctatcaagtgcaaagctctgagggataaggttaaaaaagctgaacaaaatggagatggttcgaaatcagttggtactaggcagggcaatccgttggctgattgttttggagaagggaaaagacatgatgcagatatgaaaatagttaaatttttatgtgctaacggcattccgtttaatatattgagaagcccacaatttgctgaaatggtcacagccattaacaaagctcccagtggatacaaaggtccatcctctgagaaggcaaggacaactctactagatgcatgcaaaagaagcgtagaacatgatttggcaatagtcaaaagtacatggtgcacacaaggtgtttctgttgtgtctgatggatggactgatctaaagaacaaaccacttatcaatgtgattgcatctaatagccgaggtgcatccgtgcatgagcacattttctgggggccatgtgtcactcacaccttgaaccttatattcaaagatttctcaaaaaaatttgactgGAtgagtgatacatacagcaaagggaaagctattgtcaagttttttcagaatcatcggcattgcctcgcaatgtttagaagtaattcaaagttggacctacagaagattaaaaaaactcgttttgcttctcactaccttttgcttttgaggctcactaaatgtcaagaagcacttgccaccaccatagtcaccaatcaatggaaagattggatgaaaggttgcaccaatgatctgcggcagcaagtgtcacgcccggaatttctatccaaaattccaaacgcttacatgtgtgttaaaccctcgtccaggaatcaaccgaggcacacaatgacaatattgataatagagtacaaataa
More
|
|||||||
| Protein seq | MAFGSGSKKRRRSEIAAHEDVGGADADVVVHEDDSNTNDELGADGSEEEDAGSSKKSGTVNPLYDEVTVVKAPKGKNDSGTKQWQCKHCQKKLKGSLTRIRIHLLGPPPGKKAEVARCVALLKDPIKCKALRDKVKKAEQNGDGSKSVGTRQGNPLADCFGEGKRHDADMKIVKFLCANGIPFNILRSPQFAEMVTAINKAPSGYKGPSSEKARTTLLDACKRSVEHDLAIVKSTWCTQGVSVVSDGWTDLKNKPLINVIASNSRGASVHEHIFWGPCVTHTLNLIFKDFSKKFDWMSDTYSKGKAIVKFFQNHRHCLAMFRSNSKLDLQKIKKTRFASHYLLLLRLTKCQEALATTIVTNQWKDWMKGCTNDLRQQVSRPEFLSKIPNAYMCVKPSSRNQPRHTMTILIIEYK
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g19870 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0010460 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0010640 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0010500 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0010380 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0182500 | RBH | 0 | 0.0159635 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0010410 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0185500 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0010130 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0010000 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0010770 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0010100 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G010240 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
