Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_08g0006710 | OGI:08019250 | 10/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr08:6990372-6998682 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ccctcgcttgatttagccaactcccttctcTtttgaattatagcttgtagtgctatattgTttttcttaattctttctgctctccctctttcatattcattaaggtaggtagtAttctcatttcctctttctcttgccattcTttttcctgtagaaaaatacaatagtttagtatcttatttcacaatgtgaagtaatagcaggtctattaaacaagctagcaattatgtaaaacatgagaaaagtaaacgatagcaTttgagaagaaggtgaaatgacatacttTCtcttttcagttgcattaacaattattccatcaatatctgatctaacgggagacacatatgttggatcaggagtaatgttgctgccaccaaaatcaggacattgtacatgttcactttcgtgatcagaactttcagtttgtacTttagccatatcatagaagtctcttggttttgtctcaataacagcactccaaccaTtgtcacTtgggtcttcaacatagtatacttggactgcTtgagaggccaaaataaaaggctcatcggacagcttgctaccagtattaaataaatgcttgagattaacAtttgtggttcccaacttatcgaccttaatccacttgtcctgtacacgattgtcaacccactcacatttgaagagagcAatatttcccttgtgcttatagtccaattcaaggatttcagttatagcaccataataggtcttattttccaccattggattattatttccagcagatttggaagaggtttgagcaactagagtcactccactacattggacAgacctaccctcatcataggacttggtgtgaaaaatatgaCcattaatagtgtcactggaacgggattggttatctctaacgggcttaatgcatcatctcttttgggcagggcccccgtcactaaccaaaggtcagtgatgtgggaaaatatctcaatcgggcatccggccgtcacggatgacacatctcaatcgggccaacacaaaagcccatcacggatgactcTCAtctctaacgggcctagattatagcctgtcacatatgagtataacccacaaaaaaattaattttgcttttttttagcctcgggcctttgCCCCccgtcactaaccacatatgagtataacccacAaaaaaattaattttgcttttttttagcctcgggcctttgccccccgtcactaaccAaaggtcagtgatgtgggaaaatatctcaatcgggcatccggccatcacggatgacacatctcaatcgggccaacacaaaagcccatcacggatgactctcatctctaacgggcctagattatagcacgtcacggatgactctcatctctaacGggcctagattatAgcctatcacatatgagtataacccaaaaaaaattaattttgcTtttttttagcctcaggcCTttgccctccctagtgtgcctccgggacaaattttctggttggtcaCccatccgggaattgctctagaccAagcacgcttaacctcatagttctttgtagactagttttcgagaaagaaattgtaatttgttggtatgagtattctattaatcctattaagccctaggctaggatgtcacacctccctattcatatacatttattcacataacacAaccacattcacataacatccaTtttgatcacatatttcaccagcaaatccaatttaattgaatcaaatatataTttagcaagtattatcatgagtaggaggcaaatcagacttctaggaaaaaataaatttcgaattgaattttctgatactaaatgaactcatatgaaaaagctatcaaaaacaaagttgtagaactcaTtgagatctaccaTttttattttggtcatttctccatccgagtttgattgaactatataaaatttatattttaaaatataagaaattcaaatatttttttcgagtagtaaaTgatttcaaatggtaaaattgtcaacaacaaagttgtataactcatcaagatttataacttttactttggTCtttttcctatataacaTtttttgaacagtttgaatttgaatttaaaaatataACaacttcaaacaatattttcaaatactaaatgatttcaagtgaaaaagtcatcaacaacaaagttgtataactcATcaatatctataacTtttattttgttcatttttctatacaacaTttttttaaacagtttgaatttgaaTttgaaaatatgacaacttcaaacaacattttcaaatactaaatgaTttcaattgaaaacgtcatcaaCaacaaagttgtataactcatcaagatctatAacttttattttggtcatttcttcatccgataaagtaatagtaacattgttcacAaaattcacatatctctcatctagTtttataaactataacacagatacgtaaTttttgtgaacaatgttactaacactttgtcggatgaaaaaatgaccaaaataaaagttatagatcTtgatgaattatagaactttgttgTtgacTttttcagttgaaatcatttagtatttgaaaatgttgtttgaaattgtcatattttgaaattcaaattcaaactgtttaaataaatgttgtatagaaaaatgaacaaaataaaagttatagatattgatgagttataCaactttgttgttgaTgacTttttcagttgaaatcatttagtattcaaaaatattgtttcaagttatcatattttcaaaTttaaattcaaaccgttAaaaaaacgttatatagaaaaatgaccaaaataaaagttatagatgttgatgagttatacaactttgttgttgatgacttttttagttcaaatcatttagtatttgaaaatgttgttttgaagttgtcataTtttcaaattcaaattcaaactgttcAaaaaaaatgttatatagaaaaataaccaaaatAaaaataaaagTtgtAaatattggtatgttatacaactttattgttgataattttttcatttgaaaTtatttagtatttaaaaaTattgtttgaagttgtcatattttcaaattcaaactcaaactattcaaaaaagttatatagAaaaataacctaaataaaagttatctctaaCgggcatcaacaaaagcccgataccgatatgagtcatcggtgacgggctttaaagttatctcaatcgggccatatttgtagCccgtcaccgatgaccctcatcactgacgggctcggcgtctgggcccgattgagatatgcgaggttatctcaatcgggtctaaatctttgcccgtcacagatgagtgtcatCcgtgacaggctatatgcacttgggcctagagtgagtacatttacaacggtgcaaatttaggcccgattgagatgacttcgtcctgacggcccaagtagtccaggcataattgagCccgtcacagatgataggatctgtactagtgtgtactgttgtatttagttgctactaccaaaGgtccattagctaaagTttgaatctcttcagaaacctcctcaccaTttcttaataactctgccacatgaaagccaaaccattcatgaaacttctcatagtgaatacgactgatttcactgTtgtttctataaCCaagtgacgataagtaatcatgatgTtttatgcaaggttaaatataattttagtgtttaaagtgaaaagaaCcagcagactataatagtgagatagttagcatagcctacctcaagtatggctctatatgatcataattaaataagacatatctatgtgcttggagccatgtagtctaaggtcaccatgcactttccagacaaatCccgaccaatgTtgttgtagaagaatggcatggtaattgagcttggtttatctatactagttctggaTtttcgagagaacctagtttcacatccttCtaaataacgagagcaaaatgtaagactctcatcaaacaaatagccttcagcaattgatccctcaggatgactcttggtgcgtacatatccctttaacctcattagaaaccTacatagaattAatacaacagcagattatattCacattatataTatatatAtatatgtgtgtgtgtgtgtgtgtgtgTgtgtgtgtgtgtgtgtagttatacaatactcatagtttgtttttgaatattaCctttctattggatacatgttgctgtactgaactgggccagaaatccttacttgggtaggaagatgagccattaagtgaaccataatatcAaaaaaggctggtagaaatatagtctctagaaggcttaatgtttcagcaatttcagcatctaacttttccatatcacttatggaaataacaggtgagtatattttcttaaagaagTtactcacacgaaccaatactgcactaacatattctggcaatgtctttcgtactgctagtggAagcaagtgttgtaagaggatatggttgtcatgacttttcagaccaattatccttttctctttaacatgtacatgccggCgaatatcagaggcatagccatcaggaaatttgattcgtttcagaacttcacaaaacaatttcttctcttcagaactcattgagaaaggtgcaggaggcaaataataagaatccccaacttcgacaggatgcaaataTttccgtatatctagaagtttaagatccaatcgagcattcagattatctttagatttcccatcgataCccaatagtgtgttgatgatgttgtcacatacatttttttcaatgtgcattacatcaaaattatgtggaagcatcacatccttccaatatcgcaacctaaaccagatagatctcctattccatattaTtttttcctctgtttccttgccTttactatttggtttggtttttttcttcTttgggtcctttccaaaatctgcaggtagatcttctgtttgcttaaaaaTCtcttctCcggtcagaggcttcggtgctgtccctaactccacattgccatcgaatgatgctgcatcaaacctaaaCttgtggtttgcatctaagaacctccgatgaCccatgtaacaacacttgcctCcatttttcaaatgaatagaacaagtatatgagtggcaatgagggcatgctacTtttcctgaagttacacatgcagagacataaccTaacccaggaaaatcagtgatggttttttgtagggcagcatgcaactggAaatattcgtccttggaagaatcataagttcttacaccttcctcaaacatatcatgcatatcatctactagtggttcaaaatagacatccatattctttccaggtgaatttggaccagggattaataaggaaagaatgaagtttggttgcttcatacattgccaaggaggtagattcattggaattatcacaacaggccagatgctataactgcagttcattaatctaaatggattaaagccatcagtagctaaagttagcctgagattgcgactatctgcagcaaactctgggtatgtgttatcaaaatgcttccaatctggagagtcagctggatgcctcaatagtccatccttcgtgcgCccttcatcatgccaccgtacatcattagcaagttttggggacataaacattttttgaagcctctcttcaataggaaaatagcgaagcacttttctaggaactttatggacacgcttcccatcaagacttttcttggatgttttcctgtgagaagtattgcattttggacagacatctgcattggcatattgcttcctaaacagtacgcagtcattctcgcatgcatgaatagtatcatacccaagcgaaagacacttgactattttcctagcttcataaaagctcttaggtactgttgagcccttagggaaagcctctctaagaagatcaagaagcatatcaaaactcttatcactccagccaCcaagaagttttatgtggagtaattcgactagaaagcgtaactttgagaagctttcgcaccttagataaagtgatgtatttgcatcactacattgtcatcgtcatttctatccaaattCcccatatctaatccatgagcaacatcatgaagcatatcaaacatctcattagcttcctctgaactactatcttgtctcataatctcatcaaagtttgctcaggaaaagaggctggtgcttcaccatattgagcaaaggaagacgatgcctctccatgaaatatccatgtcttatacccatctaaaaacccatcacatattaaatggacatagatttcactagcttccttccaacaaccattcacacacttcttgcaagggcatagtattgtgttctcttttgctgaatgggtaaaagcatattgtataaattcgttgaccccttgtatgtattcagatgtgtgcctatagttttttttgaaagtttagagaaagatgaatgaatggaaaaaaaaacacattgcgccacattaattattaggtagaattgtacctaggaaggtccatccatctcttatccatagctgatattgacaatcaaatttcacaggtcgcctaaattattatgtgtttcagtgGTgTtttctgcgcgtcaagtacatgccattgtgctcatgggaaaaagtataaaaagacattgcacaaaacaaacataacacatagatatagcattttagccTttaagcacagtactgatggcaagttggttgatactaaccgtggtacgaagtttttcttgagatgtcctgctgggtagatgctcaacaacgtaggttgattgcagcaaaatcgatagtggaccactaaactgcaccataaagccaaatagttcacatttagaaacaaattataatgctgacttaaaattaaatgcttgcgttaataatttcaagAaactcccaagatatcaatctaggtaaagagtgctagaacagttaagtgattgcccatttccaaatcaaatgtgctaaaataatttgcaaatcaatatctgtacaaatgatgtggaataaaatcaaagcctaaagcaccaaatgatgtctgctttatctcatggttgaaaggattgggttcaggatgtcagatagagatgaaatattaCtattatttgacaccgacactaacttcacaaaatatactagtagaacacatactacttacctttgcacaggtcatgacgtaccagactcacaactacctcacatgatgcctatattttaatatattccatagtttcagactttcagtagcactaactttcaacagtaaggtggttttaaaatgtcttagcaatggatctgaacagagtgccactatgaagctcactgcagggctcgtctatattaaattggcaaaaggtgatggcagcatcagtgTtgaaccaacggttaatatcacacaaaaataaaaagaacaaagagcctttaagaatcacacaaaaatatcttcaaggagtaatgtagtgtatactgaaagcacaggTggccattgtattcacttttgaagtttacatagcacactgtattcaccgtcgtcagttgttatttttagatcaatcagatcattgtccattcataccaagatttacattgttacactgtcattgtcattctcccaattctaacacccgaaacacattctgattgcaatcggtgcAaaattcgttaaagtaaagaacaagcaagctggtcactcagttaccctcgatttctaagcaactaattgctacaaattcccctccaaatccatcacgcaagcaccaatatgcagacaaattgagtaaatcacagggtggacatacagcttataggcagggttgtaaaaagaaaaacacacacacatccatctatgagacAaaaaaaatcacactcataaacaaggggatttgattcttacctaaacctggaggttggggaggcggcggaggaggtggggaagagggtggactcaactgcagcgatgggaaggcattggggaagagggaggagccgacagcggaagccggccggccggaggaggagtcgatggagaagtagaggaggacggcggcgtgtggagtcggcgcggatctgcaggaggcatcgtggtcgggctcgTCggaggagggTaggcatcggggtcgggctcgtcggaggaggggAggcgtcggggtcgggctcgtcgaggtcgggctccggcggtggcggggtcagcaggaggaggacggcggcgcagaaggaggacggcggcgcggggtgtgggaatcgcggggtgtgggaggcagcgtgcggtggtgtgggtggatggggaatcgcgggtgcggcgc
More
|
||||||||||
| CDS seq | atgcctAccctcctccGAcgagcccgaccacgatgcctcctgcagatccgcgccgactccacacgccgccgtcctcctctacttctccatcgactcctcctccggccggccggcttccgctgtcggctcctccctcttccccaatgccttcccatcgctgcagttgagtccaccctcttccccacctcctccgccgcctccccaacctccaggtttagtttagtggtccactatcgattttgctgcaatcaacctacgttgttgagcatctacccagcaggacatctcaagaaaaacttcgtaccacggaaaaAgaatggcaagagaaagaggaaatga |
||||||||||
| Protein seq | MPTLLRRARPRCLLQIRADSTRRRPPLLLHRLLLRPAGFRCRLLPLPQCLPIAAVESTLFPTSSAASPTSRFSLVVHYRFCCNQPTLLSIYPAGHLKKNFVPRKKNGKRKRK |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_08g0006710 | OsNaBo_08g0006710.01 | Chr08 | 6990372 | 6998682 | - | NAM | ||
| CDS seq | atgcctAccctcctccGAcgagcccgaccacgatgcctcctgcagatccgcgccgactccacacgccgccgtcctcctctacttctccatcgactcctcctccggccggccggcttccgctgtcggctcctccctcttccccaatgccttcccatcgctgcagttgagtccaccctcttccccacctcctccgccgcctccccaacctccaggtttagtttagtggtccactatcgattttgctgcaatcaacctacgttgttgagcatctacccagcaggacatctcaagaaaaacttcgtaccacggaaaaAgaatggcaagagaaagaggaaatga
More
|
|||||||
| Protein seq | MPTLLRRARPRCLLQIRADSTRRRPPLLLHRLLLRPAGFRCRLLPLPQCLPIAAVESTLFPTSSAASPTSRFSLVVHYRFCCNQPTLLSIYPAGHLKKNFVPRKKNGKRKRK |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.510384 | 0.000000 | 3.047704 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0007070 | RBH | 0.109857 | 0.168076 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0006900 | RBH | 0.183666 | 0.000000 | 1.215345 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G006890 | RBH | 0.390864 | 5.161246 | 1.966213 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
