Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_08g0006370 | OGI:08016190 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr08:6143007-6146934 | ||||||||
| Gene Symbol | PI304, OsPi304 | ||||||||||
| DNA seq | gtctgttctcactctttcagctcctctcccagtctccccgtctacctcgcatccaatccagagagctgcggcagccgcctcgtctgttgggaggcggcatctcgagcagtgtcgagctccggcgctgggacggcgtgggcagcagctcgcgctccagcttggcgacggcggtgacggcggcagcaggctcgcggactccggcgcacggcggcatgagctttttgttcagctgatgtttgctttcctgtgaaaatgtggggaaggtgaaggaaaaaaatccagaacaagattcggaagtacgctactgttcatccaatcttttgctacaaacggtgagaaacaatgtcagttgatctcttttttttttccttgtgaatgaattgaatcccttatggaattccttacatccaaacagggccaatctgcgtgaaggcatggccagcgggatggtggtgagcgcatccatgggggtgatgaaacccctgcttacaaagctcaccgttctgatgggcgatgagtacaagaagctcaagggggtcaggaagcaggtgtccttccttaaggatgagctcaccaccatgagtgcttttcttgagaagctagctttcatggatgatgatggtggtgagctcgatccgctggtgaaggactggaggaaccatgtcagagagatgacctatgacatcgaggactgcatcgatgacttcatgcatcagcttggtggtggtgctgatgcatctggtttcctccagaagacggctcgccgtctcaagacgctgcgcgtgcgccatcagattgccaaccagatcgacgagatcaaggctcgtgtgatcgaggcaaatcagcgccgcaggaggtatgagcttgatggatgcagcaattccagagcttctgagtctgtggctatagatcctcgcttaacagcgctctaccaaaaggctgataatcttgtgggtattgatggcccaacagaagagctaatccaattgttgacagatgcagggcagcagaagctcatggtggtgtccattgtgggatttgggggtcttggtaaaacaacacttgccaaacaggtttatgataagatcggacagcaatttgactgcaaggcgtttgtttccgtttcccaaaggcctgatattgcaagacttctcagcaccatacagtcaaaacttaacatacaggagtcttcccaaactcgcgaggtgcaagacatcatcgacgtccttagagactatttgggaaataagaggtaattaactagagtgttcttttccaatctttcagaactatgtacttggtataaatacctctgaacagagacagaatacttcatgattaacactaaaaggtgttatacctatcaagatgtgcgctagatgtgtggaatgttattaactgtgtgccttcatctatgcttaaaaatgttatactaaaacacattttgcattgttctctgtaatacctggcacattattccattagtagattttttaaaagaaaaaaaatgggaccatttcaagtctcttgatgagcctgccaattacaaaacataatttagttgctattacatggtgttaccaaatttgattgtcatcaatctgctaatttagccatggtattcatggattcgcataaatggatttattttatgttgttaaacaatgttgtactgagttgtttcatttgtagtttcagactttcaatcatccaatgatgcacgtaatgacgtaaatatataacatgtgcaaacaatatgttatatttgtatgtaaatataacatttgcaaaaaataatttgacaggtatcttatcgtagtcgatgacctgtggaaacaagaagcgtgggatattattagttgtgcttttcctgaaaatggtaatggtagcaaagtgatagtaaccacacgtgtggaagatgtggcttgctgggcatgtaggaaccatcaatacattcacagaatgaagtccctcgatagtgagaactcaaaaagattgttctttcaaagagtatttggatccgaggatggttgcccctcacagtatgaagaactttcagccgaaatcttaaagaagtgtggaggtttgccgcttgcaattattactatagccagcctattagcttgtcaacaagcaagaataatgcaagaatgggaaaggatacgaaattctttgggcgccccatttggcacaaatccaagcttggaaggcatgaggcaaattctaaaccttagctataagaatcttcctcttcatcttagaacatgcctcctttatctcggcaattatccagaggactacgagatcagaagggatgatgtggttagacagtggatagctgaaggcttcgtgaggagctctcctgggcaagacttggaggatgttggcaggagctatttcaatgagcttatcaataggggtttgatacaacctgagcaaaaccgttattgggaggtgacgggttgcagggtgcatgatatgatgcttgatctgatcctgagcaagtgcaaggaggataattttatcagtgttgtgtacagtggtgaagactacgtgtccatcgctgggcagcatgggtacagcagcaataaggttcgccggttgtccctgcagtccaacgctgcagaatcagattgcacggtgttaatagaaggcaaagcaactcctgctcacttggctcaagttcgatcaatttcactgtttgaaaagagtacaagtggtctcccattattgttgcgatttaaatatctccgagtgctgcatatcatgttgggtgacggctgcgagcgaaccgacctcactgccgttagccaactacttcaactaaggtgtttgatatttcttggctatggttgtaaggtagagctccctagtagaatatgtggtcttgtgcatttagagacactggaaatagcttgtaatgttataacaagcatcccgttagatattgttagtttgccctgcctatccgacctgaggcttccatggggtgtgcagctcaactgtttacccaacagcaagtctctacgcactctacacatatggcctcccctggatatggactttaaggcccttggcgagttgaccaatctaagggatctgcgcctatactttgacggaaaggagtcgtcaacagcaagtaaccttgattctctggggtcttctgttggaaaactccaaaacctcaggtatttgtatttgggaatctatttccagtttggtatctctggtgacagcctgatgggctcactgtctagatttcctcgcagtattgagatattggttatgccaagttgttgcttctcccgagttcccagatggatcaacgttgctctcgttaacctccgccgcctacatctgtctgtgtcagaggctagcaccgatgaggttagtattcttggagagctgccctccctcgtcttcctcaatttggatctgaggctgaagagcaagggcaccatcatgttcggaggtggtgaggggtcattcccagctctggaggatctcttgttgaggtgtgctggcgatgttgcctcacattcacggctgtgcttcctggcgggtgtaatgcccaagctccagaggctcgtgctgcggttctggtcttgtgagttgggcatcgatacagcacctgttggcatggagcacctctcgagcctccagctcatcgatgtcgacatcgacgtcctgcaggagaagaaaaacgtttttcctcgggacgctgttgagcatgtgttcaggcaagccgcacaagcgcaccccaaccagcctgccttcatattccatttctggtgattgatccttttatctgaattctgatcctatgtgtgtatgtaacaagtcgtggaaacagcaacagctcagtggtttctcctgtttgtggtactacaacattattataactgtaataaagagcatttcacaatta
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| CDS seq | atggccagcgggatggtggtgagcgcatccatgggggtgatgaaacccctgcttacaaagctcaccgttctgatgggcgatgagtacaagaagctcaagggggtcaggaagcaggtgtccttccttaaggatgagctcaccaccatgagtgcttttcttgagaagctagctttcatggatgatgatggtggtgagctcgatccgctggtgaaggactggaggaaccatgtcagagagatgacctatgacatcgaggactgcatcgatgacttcatgcatcagcttggtggtggtgctgatgcatctggtttcctccagaagacggctcgccgtctcaagacgctgcgcgtgcgccatcagattgccaaccagatcgacgagatcaaggctcgtgtgatcgaggcaaatcagcgccgcaggaggtatgagcttgatggatgcagcaattccagagcttctgagtctgtggctatagatcctcgcttaacagcgctctaccaaaaggctgataatcttgtgggtattgatggcccaacagaagagctaatccaattgttgacagatgcagggcagcagaagctcatggtggtgtccattgtgggatttgggggtcttggtaaaacaacacttgccaaacaggtttatgataagatcggacagcaatttgactgcaaggcgtttgtttccgtttcccaaaggcctgatattgcaagacttctcagcaccatacagtcaaaacttaacatacaggagtcttcccaaactcgcgaggtgcaagacatcatcgacgtccttagagactatttgggaaataagaggtatcttatcgtagtcgatgacctgtggaaacaagaagcgtgggatattattagttgtgcttttcctgaaaatggtaatggtagcaaagtgatagtaaccacacgtgtggaagatgtggcttgctgggcatgtaggaaccatcaatacattcacagaatgaagtccctcgatagtgagaactcaaaaagattgttctttcaaagagtatttggatccgaggatggttgcccctcacagtatgaagaactttcagccgaaatcttaaagaagtgtggaggtttgccgcttgcaattattactatagccagcctattagcttgtcaacaagcaagaataatgcaagaatgggaaaggatacgaaattctttgggcgccccatttggcacaaatccaagcttggaaggcatgaggcaaattctaaaccttagctataagaatcttcctcttcatcttagaacatgcctcctttatctcggcaattatccagaggactacgagatcagaagggatgatgtggttagacagtggatagctgaaggcttcgtgaggagctctcctgggcaagacttggaggatgttggcaggagctatttcaatgagcttatcaataggggtttgatacaacctgagcaaaaccgttattgggaggtgacgggttgcagggtgcatgatatgatgcttgatctgatcctgagcaagtgcaaggaggataattttatcagtgttgtgtacagtggtgaagactacgtgtccatcgctgggcagcatgggtacagcagcaataaggttcgccggttgtccctgcagtccaacgctgcagaatcagattgcacggtgttaatagaaggcaaagcaactcctgctcacttggctcaagttcgatcaatttcactgtttgaaaagagtacaagtggtctcccattattgttgcgatttaaatatctccgagtgctgcatatcatgttgggtgacggctgcgagcgaaccgacctcactgccgttagccaactacttcaactaaggtgtttgatatttcttggctatggttgtaaggtagagctccctagtagaatatgtggtcttgtgcatttagagacactggaaatagcttgtaatgttataacaagcatcccgttagatattgttagtttgccctgcctatccgacctgaggcttccatggggtgtgcagctcaactgtttacccaacagcaagtctctacgcactctacacatatggcctcccctggatatggactttaaggcccttggcgagttgaccaatctaagggatctgcgcctatactttgacggaaaggagtcgtcaacagcaagtaaccttgattctctggggtcttctgttggaaaactccaaaacctcaggtatttgtatttgggaatctatttccagtttggtatctctggtgacagcctgatgggctcactgtctagatttcctcgcagtattgagatattggttatgccaagttgttgcttctcccgagttcccagatggatcaacgttgctctcgttaacctccgccgcctacatctgtctgtgtcagaggctagcaccgatgaggttagtattcttggagagctgccctccctcgtcttcctcaatttggatctgaggctgaagagcaagggcaccatcatgttcggaggtggtgaggggtcattcccagctctggaggatctcttgttgaggtgtgctggcgatgttgcctcacattcacggctgtgcttcctggcgggtgtaatgcccaagctccagaggctcgtgctgcggttctggtcttgtgagttgggcatcgatacagcacctgttggcatggagcacctctcgagcctccagctcatcgatgtcgacatcgacgtcctgcaggagaagaaaaacgtttttcctcgggacgctgttgagcatgtgttcaggcaagccgcacaagcgcaccccaaccagcctgccttcatattccatttctggtga
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| Protein seq | MASGMVVSASMGVMKPLLTKLTVLMGDEYKKLKGVRKQVSFLKDELTTMSAFLEKLAFMDDDGGELDPLVKDWRNHVREMTYDIEDCIDDFMHQLGGGADASGFLQKTARRLKTLRVRHQIANQIDEIKARVIEANQRRRRYELDGCSNSRASESVAIDPRLTALYQKADNLVGIDGPTEELIQLLTDAGQQKLMVVSIVGFGGLGKTTLAKQVYDKIGQQFDCKAFVSVSQRPDIARLLSTIQSKLNIQESSQTREVQDIIDVLRDYLGNKRYLIVVDDLWKQEAWDIISCAFPENGNGSKVIVTTRVEDVACWACRNHQYIHRMKSLDSENSKRLFFQRVFGSEDGCPSQYEELSAEILKKCGGLPLAIITIASLLACQQARIMQEWERIRNSLGAPFGTNPSLEGMRQILNLSYKNLPLHLRTCLLYLGNYPEDYEIRRDDVVRQWIAEGFVRSSPGQDLEDVGRSYFNELINRGLIQPEQNRYWEVTGCRVHDMMLDLILSKCKEDNFISVVYSGEDYVSIAGQHGYSSNKVRRLSLQSNAAESDCTVLIEGKATPAHLAQVRSISLFEKSTSGLPLLLRFKYLRVLHIMLGDGCERTDLTAVSQLLQLRCLIFLGYGCKVELPSRICGLVHLETLEIACNVITSIPLDIVSLPCLSDLRLPWGVQLNCLPNSKSLRTLHIWPPLDMDFKALGELTNLRDLRLYFDGKESSTASNLDSLGSSVGKLQNLRYLYLGIYFQFGISGDSLMGSLSRFPRSIEILVMPSCCFSRVPRWINVALVNLRRLHLSVSEASTDEVSILGELPSLVFLNLDLRLKSKGTIMFGGGEGSFPALEDLLLRCAGDVASHSRLCFLAGVMPKLQRLVLRFWSCELGIDTAPVGMEHLSSLQLIDVDIDVLQEKKNVFPRDAVEHVFRQAAQAHPNQPAFIFHFW |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_08g0006370 | OsNaBo_08g0006370.01 | Chr08 | 6143007 | 6146934 | + | NAM | ||
| CDS seq | atggccagcgggatggtggtgagcgcatccatgggggtgatgaaacccctgcttacaaagctcaccgttctgatgggcgatgagtacaagaagctcaagggggtcaggaagcaggtgtccttccttaaggatgagctcaccaccatgagtgcttttcttgagaagctagctttcatggatgatgatggtggtgagctcgatccgctggtgaaggactggaggaaccatgtcagagagatgacctatgacatcgaggactgcatcgatgacttcatgcatcagcttggtggtggtgctgatgcatctggtttcctccagaagacggctcgccgtctcaagacgctgcgcgtgcgccatcagattgccaaccagatcgacgagatcaaggctcgtgtgatcgaggcaaatcagcgccgcaggaggtatgagcttgatggatgcagcaattccagagcttctgagtctgtggctatagatcctcgcttaacagcgctctaccaaaaggctgataatcttgtgggtattgatggcccaacagaagagctaatccaattgttgacagatgcagggcagcagaagctcatggtggtgtccattgtgggatttgggggtcttggtaaaacaacacttgccaaacaggtttatgataagatcggacagcaatttgactgcaaggcgtttgtttccgtttcccaaaggcctgatattgcaagacttctcagcaccatacagtcaaaacttaacatacaggagtcttcccaaactcgcgaggtgcaagacatcatcgacgtccttagagactatttgggaaataagaggtatcttatcgtagtcgatgacctgtggaaacaagaagcgtgggatattattagttgtgcttttcctgaaaatggtaatggtagcaaagtgatagtaaccacacgtgtggaagatgtggcttgctgggcatgtaggaaccatcaatacattcacagaatgaagtccctcgatagtgagaactcaaaaagattgttctttcaaagagtatttggatccgaggatggttgcccctcacagtatgaagaactttcagccgaaatcttaaagaagtgtggaggtttgccgcttgcaattattactatagccagcctattagcttgtcaacaagcaagaataatgcaagaatgggaaaggatacgaaattctttgggcgccccatttggcacaaatccaagcttggaaggcatgaggcaaattctaaaccttagctataagaatcttcctcttcatcttagaacatgcctcctttatctcggcaattatccagaggactacgagatcagaagggatgatgtggttagacagtggatagctgaaggcttcgtgaggagctctcctgggcaagacttggaggatgttggcaggagctatttcaatgagcttatcaataggggtttgatacaacctgagcaaaaccgttattgggaggtgacgggttgcagggtgcatgatatgatgcttgatctgatcctgagcaagtgcaaggaggataattttatcagtgttgtgtacagtggtgaagactacgtgtccatcgctgggcagcatgggtacagcagcaataaggttcgccggttgtccctgcagtccaacgctgcagaatcagattgcacggtgttaatagaaggcaaagcaactcctgctcacttggctcaagttcgatcaatttcactgtttgaaaagagtacaagtggtctcccattattgttgcgatttaaatatctccgagtgctgcatatcatgttgggtgacggctgcgagcgaaccgacctcactgccgttagccaactacttcaactaaggtgtttgatatttcttggctatggttgtaaggtagagctccctagtagaatatgtggtcttgtgcatttagagacactggaaatagcttgtaatgttataacaagcatcccgttagatattgttagtttgccctgcctatccgacctgaggcttccatggggtgtgcagctcaactgtttacccaacagcaagtctctacgcactctacacatatggcctcccctggatatggactttaaggcccttggcgagttgaccaatctaagggatctgcgcctatactttgacggaaaggagtcgtcaacagcaagtaaccttgattctctggggtcttctgttggaaaactccaaaacctcaggtatttgtatttgggaatctatttccagtttggtatctctggtgacagcctgatgggctcactgtctagatttcctcgcagtattgagatattggttatgccaagttgttgcttctcccgagttcccagatggatcaacgttgctctcgttaacctccgccgcctacatctgtctgtgtcagaggctagcaccgatgaggttagtattcttggagagctgccctccctcgtcttcctcaatttggatctgaggctgaagagcaagggcaccatcatgttcggaggtggtgaggggtcattcccagctctggaggatctcttgttgaggtgtgctggcgatgttgcctcacattcacggctgtgcttcctggcgggtgtaatgcccaagctccagaggctcgtgctgcggttctggtcttgtgagttgggcatcgatacagcacctgttggcatggagcacctctcgagcctccagctcatcgatgtcgacatcgacgtcctgcaggagaagaaaaacgtttttcctcgggacgctgttgagcatgtgttcaggcaagccgcacaagcgcaccccaaccagcctgccttcatattccatttctggtga
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| Protein seq | MASGMVVSASMGVMKPLLTKLTVLMGDEYKKLKGVRKQVSFLKDELTTMSAFLEKLAFMDDDGGELDPLVKDWRNHVREMTYDIEDCIDDFMHQLGGGADASGFLQKTARRLKTLRVRHQIANQIDEIKARVIEANQRRRRYELDGCSNSRASESVAIDPRLTALYQKADNLVGIDGPTEELIQLLTDAGQQKLMVVSIVGFGGLGKTTLAKQVYDKIGQQFDCKAFVSVSQRPDIARLLSTIQSKLNIQESSQTREVQDIIDVLRDYLGNKRYLIVVDDLWKQEAWDIISCAFPENGNGSKVIVTTRVEDVACWACRNHQYIHRMKSLDSENSKRLFFQRVFGSEDGCPSQYEELSAEILKKCGGLPLAIITIASLLACQQARIMQEWERIRNSLGAPFGTNPSLEGMRQILNLSYKNLPLHLRTCLLYLGNYPEDYEIRRDDVVRQWIAEGFVRSSPGQDLEDVGRSYFNELINRGLIQPEQNRYWEVTGCRVHDMMLDLILSKCKEDNFISVVYSGEDYVSIAGQHGYSSNKVRRLSLQSNAAESDCTVLIEGKATPAHLAQVRSISLFEKSTSGLPLLLRFKYLRVLHIMLGDGCERTDLTAVSQLLQLRCLIFLGYGCKVELPSRICGLVHLETLEIACNVITSIPLDIVSLPCLSDLRLPWGVQLNCLPNSKSLRTLHIWPPLDMDFKALGELTNLRDLRLYFDGKESSTASNLDSLGSSVGKLQNLRYLYLGIYFQFGISGDSLMGSLSRFPRSIEILVMPSCCFSRVPRWINVALVNLRRLHLSVSEASTDEVSILGELPSLVFLNLDLRLKSKGTIMFGGGEGSFPALEDLLLRCAGDVASHSRLCFLAGVMPKLQRLVLRFWSCELGIDTAPVGMEHLSSLQLIDVDIDVLQEKKNVFPRDAVEHVFRQAAQAHPNQPAFIFHFW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.144365 | 2.970207 | 0.238432 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0205150 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g10440 | RBH | 0.0 | 0.051092 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0205150 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0006720 | SBH | 0.132502 | 2.742359 | 0.353726 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0006690 | RBH | 0.0 | 0.459537 | 0.102722 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0006780 | RBH | 0.766734 | 5.096764 | 3.277316 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0006660 | RBH | 0.0 | 0.206348 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0006700 | RBH | 0.314487 | 11.839569 | 1.719504 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0092600 | RBH | 1.217449 | 3.9047695 | 2.085431 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0006450 | SBH | 0.106603 | 0.099033 | 0.494452 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0095800 | RBH | 0.452482 | 0.2215885 | 3.137262 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0006370 | RBH | 0.0 | 0.030746 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0006410 | RBH | 0.000000 | 8.145929 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0006430 | RBH | 1.172397 | 4.189942 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0006740 | RBH | 0.0 | 0.090258 | 0.538311 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0006450 | RBH | 0.000000 | 3.885215 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G006510 | SBH | 0.000000 | 8.528366 | 0.188531 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
