Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_08g0006050 | OGI:08015410 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr08:5337750-5340980 | ||||||||
| Gene Symbol | RLCK247, OsRLCK247 | ||||||||||
| DNA seq | ccccactatagctggatgactcgcggagctcaccaacgtcgccacgccctctcgccgacctcctcctcctcctcctcttgcctcctccgctgaggcagccagtgcgtgcgccgcgcgggcagcgtcggcattagaggggtggtggcgggcggcgcgccgacggagacgccaggtgattcttcttgatttgagagggtgtggttgagtttctatttcttggcatccgcgaatttttagttagtgggatgagaaaaggggcgacctagttggttcgagatcgaatctttttatatagcatctcggtggaagaatgcgggtctctctgtttgttgctgcggggatgatctctgacgaccaccattgatgctgatgcagtcctctgtttgttcgagaatctgtgtttgaggctgcctggctttgtgattcggattgaattcgcctcccgtcggggtttcgtttcttgggttctcgccgcagaatttgtcggcctcagggggaaaaatagggtttgaagtgatcttgattcttgaatcattattgtgttctgttttgccatttttgctgaatttttggtcggtgattgttctgcaaacgctcaagttgcgtaggagctggaatgctggatgtataaaatgatttttcaccttagaaacatgattagtggattagtagcatgcagtatgaaccatttaactcggtgtttaccccctgattgagtaattgcctgaaacgaatgggagtaattcttgcaatgttaaggaaaaaaaaactgtaactttcagaaaaaaaaactcactctgtattttcagtacatgggtctgataagattcagattagtacagagttattaatggataagtaacaggaagtatgaaccatttaactcggtgttctccccctgattgagtgattgcctgaaatgaatggagtacttcttgcaatgttaagagaaaaagaaagaaactgcaactttcagaaaagctcactctgtattttcggtatatgggtctgataagattcagattagtacaacgtgtgctttgatgagaaatatacacatttgttcggtatggatctgaaggagtgcccaccttgtgcctgtcaactggatccaatcccctttgactttgaaatagatataaattttgccagctgtggtaattgctggaattgatttgtaaattgctccctttgtttggctgccacgcagggtgtggaggaggatctgacccttcacttggtggtgtgatgtcggttgggtgcgccgatgaattgcattgactggtttcaccattatgtttttttccctgtactccactggacatactttaatgcagtaaactagtgatgcagcaagttgattagatagtgtagaactcactaactaaacaattttttattactaatgctgatgccagtttcttattgtgtggtcaaccaatttgttttcatggtcaagtggtactggtaaacggacatatatttgtttacacaacaatggttgtgtgacatgagactacttattacagtaactctgagtctctgactggttgttcctcatcacAaaaaaaaaaaaaaaaccgttttgatgttcctctttcttctgcagatattcagcagaaggcacttcctctgtttgatttgcaaaaatggcttgctgctttatgtttgggaatgatacaaaacaaactagtgaaggtgaacaaggtgggcatgtcttcatttagttctatagtctcttctgtatacagaatgctcctcattctgatacatttgttgacttgcaacttgtttctggcggtttcaggagaaaaagcggtcaggattttttcttacaatgagctgagaagagctacacatgattttagtggggcgaacaagattggtgagggcggcttcggttctgtgttcagggtaatgtaccaaagcctttggtcgcttcaactaagtctaatatccattctatattacatcgacctcacttgcttaaaattcattttggttgatcagggaaggctcagagatgggacaatagttgcagtaaaggtgctctctgctacttcaaggcaaggcgtccgtgagttcattaatgaactgacagcaatttccgatgtgatgcatgaaaacctaattacgttagtcggctgctgtgctgaagggtctcataggatccttgtatacaattatcttgagaacaacagccttcaacatacactactaggtaacatactggtctacctagtctgtccttgcttaatcaagacactctttaacagtaacctcactcacatggcaatgcagggtcaggccgtagcaacatccaattcaattggagagctcgtgccaaaatcactgtaggtgttgcccgtgggcttgcatttcttcacgaagaagttcgtcctcacataatacaccgggacataaaggcaagcaatattcttctcgacaaggatatcacccccaaaatatctgattttgggttggccaggctcctcccaccaaatgcgactcatgtgagcacccgagttgcaggaacaatgtaagtttaactgtgtttagggggtcttttggaaattcctgcatagatattccccatgttgtcttactctgtccttttattttatcagagggtacctagctcctgaatatgcactcagaggacaagtgactaagaagtcagatatctacagtttcggtgttttgatcttggaaattgtcagcggcagatgcaactataattctaggttgccttatgaagaacaatttctgcttgagagggtaagctctaccataataccatactaaagaatactgacaattattatgtttatgcattgacgtccggactccagactaacctgtaaaggtttgccggtgctcttgcagacatggacatgttatgagcaagggcatttagaggagatcatagatgcagatatagaagatgatgtggatgtcgaggaggcatgccggttcttgaaggttggactactatgcactcaagatgcgatgaaactccgtcccaacatgatcaacatcgtccagatgctgaccggagagaaggatgtcaacacagaaaggatcaccaagccctctgttgttggtgacctgggagacctgagaggtagcagccagcagagaccaattgatccacagtctctcctgatgagatcctttgccaccactgacccatccacatcatcagacacgactacacgatcatcgctatga
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| CDS seq | atggcttgctgctttatgtttgggaatgatacaaaacaaactagtgaaggtgaacaaggagaaaaagcggtcaggattttttcttacaatgagctgagaagagctacacatgattttagtggggcgaacaagattggtgagggcggcttcggttctgtgttcaggggaaggctcagagatgggacaatagttgcagtaaaggtgctctctgctacttcaaggcaaggcgtccgtgagttcattaatgaactgacagcaatttccgatgtgatgcatgaaaacctaattacgttagtcggctgctgtgctgaagggtctcataggatccttgtatacaattatcttgagaacaacagccttcaacatacactactagggtcaggccgtagcaacatccaattcaattggagagctcgtgccaaaatcactgtaggtgttgcccgtgggcttgcatttcttcacgaagaagttcgtcctcacataatacaccgggacataaaggcaagcaatattcttctcgacaaggatatcacccccaaaatatctgattttgggttggccaggctcctcccaccaaatgcgactcatgtgagcacccgagttgcaggaacaatagggtacctagctcctgaatatgcactcagaggacaagtgactaagaagtcagatatctacagtttcggtgttttgatcttggaaattgtcagcggcagatgcaactataattctaggttgccttatgaagaacaatttctgcttgagaggacatggacatgttatgagcaagggcatttagaggagatcatagatgcagatatagaagatgatgtggatgtcgaggaggcatgccggttcttgaaggttggactactatgcactcaagatgcgatgaaactccgtcccaacatgatcaacatcgtccagatgctgaccggagagaaggatgtcaacacagaaaggatcaccaagccctctgttgttggtgacctgggagacctgagaggtagcagccagcagagaccaattgatccacagtctctcctgatgagatcctttgccaccactgacccatccacatcatcagacacgactacacgatcatcgctatga
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| Protein seq | MACCFMFGNDTKQTSEGEQGEKAVRIFSYNELRRATHDFSGANKIGEGGFGSVFRGRLRDGTIVAVKVLSATSRQGVREFINELTAISDVMHENLITLVGCCAEGSHRILVYNYLENNSLQHTLLGSGRSNIQFNWRARAKITVGVARGLAFLHEEVRPHIIHRDIKASNILLDKDITPKISDFGLARLLPPNATHVSTRVAGTIGYLAPEYALRGQVTKKSDIYSFGVLILEIVSGRCNYNSRLPYEEQFLLERTWTCYEQGHLEEIIDADIEDDVDVEEACRFLKVGLLCTQDAMKLRPNMINIVQMLTGEKDVNTERITKPSVVGDLGDLRGSSQQRPIDPQSLLMRSFATTDPSTSSDTTTRSSL |
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| Function | Cold-responsive protein kinase 1 [UniProtKB/Swiss-Prot:Q93YN1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_08g0006050 | OsNaBo_08g0006050.02 | Chr08 | 5337763 | 5340980 | + | NAM | ||
| CDS seq | atggcttgctgctttatgtttgggaatgatacaaaacaaactagtgaaggtgaacaaggagaaaaagcggtcaggattttttcttacaatgagctgagaagagctacacatgattttagtggggcgaacaagattggtgagggcggcttcggttctgtgttcaggggaaggctcagagatgggacaatagttgcagtaaaggtgctctctgctacttcaaggcaaggcgtccgtgagttcattaatgaactgacagcaatttccgatgtgatgcatgaaaacctaattacgttagtcggctgctgtgctgaagggtctcataggatccttgtatacaattatcttgagaacaacagccttcaacatacactactagggtcaggccgtagcaacatccaattcaattggagagctcgtgccaaaatcactgtaggtgttgcccgtgggcttgcatttcttcacgaagaagttcgtcctcacataatacaccgggacataaaggcaagcaatattcttctcgacaaggatatcacccccaaaatatctgattttgggttggccaggctcctcccaccaaatgcgactcatgtgagcacccgagttgcaggaacaatagggtacctagctcctgaatatgcactcagaggacaagtgactaagaagtcagatatctacagtttcggtgttttgatcttggaaattgtcagcggcagatgcaactataattctaggttgccttatgaagaacaatttctgcttgagaggacatggacatgttatgagcaagggcatttagaggagatcatagatgcagatatagaagatgatgtggatgtcgaggaggcatgccggttcttgaaggttggactactatgcactcaagatgcgatgaaactccgtcccaacatgatcaacatcgtccagatgctgaccggagagaaggatgtcaacacagaaaggatcaccaagccctctgttgttggtgacctgggagacctgagaggtagcagccagcagagaccaattgatccacagtctctcctgatgagatcctttgccaccactgacccatccacatcatcagacacgactacacgatcatcgctatga
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| Protein seq | MACCFMFGNDTKQTSEGEQGEKAVRIFSYNELRRATHDFSGANKIGEGGFGSVFRGRLRDGTIVAVKVLSATSRQGVREFINELTAISDVMHENLITLVGCCAEGSHRILVYNYLENNSLQHTLLGSGRSNIQFNWRARAKITVGVARGLAFLHEEVRPHIIHRDIKASNILLDKDITPKISDFGLARLLPPNATHVSTRVAGTIGYLAPEYALRGQVTKKSDIYSFGVLILEIVSGRCNYNSRLPYEEQFLLERTWTCYEQGHLEEIIDADIEDDVDVEEACRFLKVGLLCTQDAMKLRPNMINIVQMLTGEKDVNTERITKPSVVGDLGDLRGSSQQRPIDPQSLLMRSFATTDPSTSSDTTTRSSL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_08g0006050 | OsNaBo_08g0006050.01 | Chr08 | 5337750 | 5340980 | + | NAM | ||
| CDS seq | atggcttgctgctttatgtttgggaatgatacaaaacaaactagtgaaggtgaacaaggagaaaaagcggtcaggattttttcttacaatgagctgagaagagctacacatgattttagtggggcgaacaagattggtgagggcggcttcggttctgtgttcaggggaaggctcagagatgggacaatagttgcagtaaaggtgctctctgctacttcaaggcaaggcgtccgtgagttcattaatgaactgacagcaatttccgatgtgatgcatgaaaacctaattacgttagtcggctgctgtgctgaagggtctcataggatccttgtatacaattatcttgagaacaacagccttcaacatacactactagggtcaggccgtagcaacatccaattcaattggagagctcgtgccaaaatcactgtaggtgttgcccgtgggcttgcatttcttcacgaagaagttcgtcctcacataatacaccgggacataaaggcaagcaatattcttctcgacaaggatatcacccccaaaatatctgattttgggttggccaggctcctcccaccaaatgcgactcatgtgagcacccgagttgcaggaacaatagggtacctagctcctgaatatgcactcagaggacaagtgactaagaagtcagatatctacagtttcggtgttttgatcttggaaattgtcagcggcagatgcaactataattctaggttgccttatgaagaacaatttctgcttgagaggacatggacatgttatgagcaagggcatttagaggagatcatagatgcagatatagaagatgatgtggatgtcgaggaggcatgccggttcttgaaggttggactactatgcactcaagatgcgatgaaactccgtcccaacatgatcaacatcgtccagatgctgaccggagagaaggatgtcaacacagaaaggatcaccaagccctctgttgttggtgacctgggagacctgagaggtagcagccagcagagaccaattgatccacagtctctcctgatgagatcctttgccaccactgacccatccacatcatcagacacgactacacgatcatcgctatga
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| Protein seq | MACCFMFGNDTKQTSEGEQGEKAVRIFSYNELRRATHDFSGANKIGEGGFGSVFRGRLRDGTIVAVKVLSATSRQGVREFINELTAISDVMHENLITLVGCCAEGSHRILVYNYLENNSLQHTLLGSGRSNIQFNWRARAKITVGVARGLAFLHEEVRPHIIHRDIKASNILLDKDITPKISDFGLARLLPPNATHVSTRVAGTIGYLAPEYALRGQVTKKSDIYSFGVLILEIVSGRCNYNSRLPYEEQFLLERTWTCYEQGHLEEIIDADIEDDVDVEEACRFLKVGLLCTQDAMKLRPNMINIVQMLTGEKDVNTERITKPSVVGDLGDLRGSSQQRPIDPQSLLMRSFATTDPSTSSDTTTRSSL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr08 | 5337921 | 5339359 | + | OsNaBo_08g0006050.01 | OsNaBo_08g0006050.02,OsNaBo_08g0006050.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 14.816283 | 0.456080 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0200500 | RBH | 0.376744 | 0.0 | 0.587029 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g10070 | RBH | 0.257074 | 0.0 | 0.164893 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0200500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0006520 | RBH | 0.0 | 2.914326 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0006450 | RBH | 0.241319 | 5.317794 | 0.301908 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0006590 | RBH | 0.000000 | 1.292438 | 0.382554 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0006460 | RBH | 0.069391 | 0.433947 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0006340 | RBH | 0.0 | 6.032799 | 2.550517 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0089000 | RBH | 1.306173 | 2.727356 | 3.0783535 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0006200 | RBH | 0.098399 | 0.487708 | 0.072242 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0092100 | RBH | 1.0687025 | 1.404244 | 6.1920655 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0006150 | RBH | 0.093824 | 0.225793 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0006210 | RBH | 0.0 | 3.512837 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0006130 | RBH | 0.0 | 49.772495 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0006320 | RBH | 0.0 | 1.022460 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0006170 | RBH | 0.0 | 8.360282 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G006180 | RBH | 0.0 | 3.854223 | 0.359324 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
