Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_08g0005260 | OGI:01040660 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr08:4506090-4509870 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcacgcgctaccacccaagcacaaaccgctgagggtgaaacctagcaccaaacgacccccgctaagcgtggccgaacgccgctaggcctatggcaacaccatagagacgaggctccgaaaacgataccaccatgttggtaacgacatccaagatgtcaccgccgcccatctaaaagatgtgattttcaccctctcacaccctaaaaattcaaaaaaatataaattgttgtttaaatggaatttttagaaataattttaaaaatcttgaaaagaagatctagttttaattaataaattccaatataaaaagtggccagataaaatttcattaaatactttgcttaattctataattcctagatttttctgggatttatttgagctaagaaagtatttttaataaatggaattgcatttaagaaataatttaaattgaaaaaggttttaaaaagtcttcttttggctttgggccgaaagtcagcccaaaaccttctctctctctccccggcccagtcggcccagtctgccgccgcgcgcgcgccctcgctcgctgacaggtgggtcccacctgtcaggttcgtcttccccgggccgccgccgccgcccgaaaccctagcgcgctgccgccgccgtttcctttccaatccggccgcccctttccttctccggctgaattgatagaggggaaacactctccgggatctcctctaccttttctcctttggaatcttcggctaattcgttttggaattcgtggaatcgagttcgaatcggatcggctttcctctctccaagccgagctttccttcgccgttgccgtcgccgtgggccttcgccgccgcctccgagtccccttaaaaggatccccggtgtctcctctacccgccgccaccctcgccttcgcctctcgtcgccggaagagctctagcaccgtgtgccctagcgtcgtcgtcgccgtcgtcgctccagccgtgcgccgccgtcgttccagccgtcgccgtcgctcgggaaggccgccgttgtgattgccgtcgcgtcgccgtcctcgtccgcctcttcgccgtcgccggagatcatcggagcagcatcgccgtcgtcgacccgaaggttttcgccgcttcctcctcgtcgccggcgccgtccgttgcctctccgccgtcgctttggtcgccggtgagttcgccgtgccgtccgcttcccgttggtgccctccgtttgcgttctcgcgccgccgttcgccggcgagcgtgcgccgcccgagccgtccgctccgccgagccgccgccgccgtcggggtgacgtcatcgctggcgtcatcggggtcgtccgtcgtgagccgccgtggacccgatcgatctcggccgtccgtttggattggatcgaatctcggccgtccgttcgcgtgaaccgccgccgtgcgcccggtccaccgcaaaccctagcccgctgacgcaataaatcccctttttccttttcaaaaataattcattattacgtcataattcaatttaaaccgatttaagtgttttaatccgatttaatctttaaaaattcataactaattcatcttagctccgatttagttggttcaagtctctaattttttctaaaattgagatctacacattAaaaatatccacatgtactgttcatgcttgtttatgtgctgttttggtgattttgttcttttctgcttagattccgtcgtttccggagagtccgttttcgccggagaagagtttgaagaattccaaggccagcaaggcaagtcacacagatcccaaacaaccctttgagcatgttgatcctatttaaagctattgtttctattcaaatattgcatttattttcgaatgtcattgggtggaattaacctattgtttgttatagcctttttgttcttgattactttattctttgataccttgggttattataacttgactagttgagctttatttattggttcaactagatattagatataattgcttagccctgcttagaaacattagctcactattgggataacttatgattcactattatttcatgatggcttaatggtagttcacgatggttaattgtgattagttaattaattaatgtgccaactaaaacctggtaatggtgggttgtgagcacatggttttgaaggtcgtgctcatgacaattaaggaccggttcacgagtttcggttgtgaaacattaaccgtgccaaccacaagccagcatgggcaacggctttatcttttgtatcgcatggttcattgcggagcaccagactgagaagtggcggagataagcccatgggggtcgctggggagtccatgccttgtttataagggggtgattatgatccaggaaggtgcactgcagtggattgtgttgtatgaggggtattgtcacaactcctttccgaggtaccgtggtggtattgaggcacatggtgacatgatgtggggttgtatcttgtgggtacagtggtacatctctgatcagagtaaaactattcgaatagccgtgcccgcggttatgggcgggtctaacaatgtctttcgtgattagtctcacccttctcaccgtaatagaagatgctataactggtaataatttgattagctcctggtttggaatggtttattcctagtttggagatagaactgtgcagccgggatggttgttcagaatggttgggcctatgcaacagggtatgttgtatagcgttggattaatattgtttaattacttaactgttttattaaattctcaaatgtttgctaaatgctgcttttgcaaatggaaccctactatgccatcctttgttatcctgtgcacttgcatatttgctgcgtggcttgctgagtatgtcatatactcaccttgcaatcattcatcagaggaagagttctacagtgaagctgaaggtgtggaggtttaggtgtagccttggtcaagctgcctgtggagtggagccgtctgcgccgtttatctttttccgctgcttagatctttattgattgagaggaactatctacctctgtaatgacattttatacgcttaataattagagtaataattatactctattatcaatttgttattgtgtgtctcggctgattcctggacgagggttcacacacatgtaagcgtttggaattttggatagaaattccgggcgtgacacacccagagaacctcgccaagaaagagagagggtaaccctcgacaacgccccaaggagatcacgacgcccgaagacgtaagcgctgccagcccggtgaaccactggactatgctttcgcctgggatcctacaaccttgattgcagatcaccgtccaccaactcagaaccaccacacagacaaatggcagcacgtggcatccaccacaccgcactgacgcccatccgtcggccgacttcatcgaaccaccacccctgagagctggcccaggactcctccgttcctccacccgccagccgcctcgccagttttggccgaaggagaacccgggactaggtggcattgcttcggcagcttgagcttcccccactgacgagctgccgcctcaatccagcctagaaactccctacaaagaaggggaggagctccatgaaggccgagggtgccgaccgacaacgaggaagacgacccaccaccaccagctccctttgcactgccatctagccgccggtggcgctgctgctccggaccagcgccacccgtcggtgcccccgaagtccgaccgccgcgccacacctggccaccgtggcggcat
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| CDS seq | atgccgccacggtggccaggtgtggcgcggcggtcggacttcgggggcaccgacgggtggcgctggtccggagcagcagcgccaccggcggctagatggcagtgcaaagggagctggtggtggtgggtcgtcttcctcgttgtcggtcggcaccctcggccttcatggagctcctccccttctttctcgtcagtgggggaagctcaagctgccgaagcaatgccacctagtcccgggttctccttcggccaaaactggcgaggcggctggcgggtggaggaacggaggagtcctgggccagctctcaggggtggtggttcgatgaagtcggccgacggatgggcgtcagtgcggtgtggtggatgccacgtgctgccatttgtctgtgtggtggttctgagttggtggacggtgatctgcaatcaaggttgtaggatcccaggcgaaagcatagtccagtggttcaccgggctggcagcgcttacgtcttcgggcgtccggcgttcggccacgcttagcgggggtcgtttggtgctaggtttcaccctcagcggtttgtgcttgggtggtagcgcgtga
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| Protein seq | MPPRWPGVARRSDFGGTDGWRWSGAAAPPAARWQCKGSWWWWVVFLVVGRHPRPSWSSSPSFSSVGEAQAAEAMPPSPGFSFGQNWRGGWRVEERRSPGPALRGGGSMKSADGWASVRCGGCHVLPFVCVVVLSWWTVICNQGCRIPGESIVQWFTGLAALTSSGVRRSATLSGGRLVLGFTLSGLCLGGSA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_08g0005260 | OsNaBo_08g0005260.01 | Chr08 | 4506090 | 4509870 | - | NAM | ||
| CDS seq | atgccgccacggtggccaggtgtggcgcggcggtcggacttcgggggcaccgacgggtggcgctggtccggagcagcagcgccaccggcggctagatggcagtgcaaagggagctggtggtggtgggtcgtcttcctcgttgtcggtcggcaccctcggccttcatggagctcctccccttctttctcgtcagtgggggaagctcaagctgccgaagcaatgccacctagtcccgggttctccttcggccaaaactggcgaggcggctggcgggtggaggaacggaggagtcctgggccagctctcaggggtggtggttcgatgaagtcggccgacggatgggcgtcagtgcggtgtggtggatgccacgtgctgccatttgtctgtgtggtggttctgagttggtggacggtgatctgcaatcaaggttgtaggatcccaggcgaaagcatagtccagtggttcaccgggctggcagcgcttacgtcttcgggcgtccggcgttcggccacgcttagcgggggtcgtttggtgctaggtttcaccctcagcggtttgtgcttgggtggtagcgcgtga
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| Protein seq | MPPRWPGVARRSDFGGTDGWRWSGAAAPPAARWQCKGSWWWWVVFLVVGRHPRPSWSSSPSFSSVGEAQAAEAMPPSPGFSFGQNWRGGWRVEERRSPGPALRGGGSMKSADGWASVRCGGCHVLPFVCVVVLSWWTVICNQGCRIPGESIVQWFTGLAALTSSGVRRSATLSGGRLVLGFTLSGLCLGGSA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0016280 | SBH | 0.676248 | 1.209810 | 0.303384 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015670 | SBH | 0.0 | 0.0 | 1.146782 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0005610 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0016010 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0075400 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0023890 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0023150 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0005370 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0032430 | RBH | 8.077785 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0015800 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0032330 | RBH | 0.0 | 4.938541 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
