Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_08g0002140 | OGI:08004990 | 10/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr08:1788755-1791681 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcggatgctgcgacggagcagagtcttcgggagctcgcatcggaggaggaggaggaggaggaggaggaggagaaggctcgcgcggttgttgacctagccgcctcccaaaccccaaccgaatgccctagtcccttgttagagacccttagagacccacttctctaagcaaaattgcaacaaatattcagtacaactctttgtttggtggagaaaatgggaagaagaaaagggatacaagttctagaaggggttctagaagtaagagggtggaggtaggaggaatggtggagaagaaatcgacaaggagcccaccggcctccaggtcgccaccgccgccgccgtccggttcttctgatcgatcgatcccctctccctgactgatgcttgttcttttgtattgtcatttttccaatcggatgggccacagtgggctagtagcttcagctcaaggtccagtaacatgagttactaacatccctgctccgagattccttcgagtaagctttagcccctcttcgtttgttcatcacaatgttgttttgctgtatacacacaaaagaaagaagaaaatcaaaatccccttacggttgcaggtagcagtggtggcggcggtggcaatggagagatggggaaggtgaattgtaatgagaagcacacatatggtgaggagaaggagaaggagaaggtggtggagactagggtgtgttcgtaagtttggggttgggaaccatctccccgcacggaaaattgagcagtccattagcatgtgattaattaaatattagctatttttttcaaaataaattaatttgattttttaaacaactttcatgtagaaactttttttaaaaaacacaccgtttagtagtttgaacccatgacaccaaacacaccctaagtcggagctgaagcctaaaccgaggaggaggaagaattgggaggaggagaagctcacatgggaggagaaggtgttgaaggttcttcacatagttcgtactccctccattttttaatagatgacgtcgttgactttttctcacatgtttgaccattcgtcttattcaaaaaatttacgtaattataatttattttgttatgagttcttttatcactcatagtactttaagtgtgatttatatcttatacatttgcataaaatttttgaataagacgaatggttaaacatgtaagaaaaagtcaatggcgtcatctattaaaaaacgaaggtagtatatgggaagtcactgaattcgaccccaagatggagtggtttgagcctacccgcctttgcctcttcaacgctgccttcttcgacctccacaaggagtgtgagtacatccatcagcttcgccatcataattaacttaattaatttaatttcttgttcatccatacaaccatagatgcatgtatatccgagcaatataaatacgtttgttgatgaatttatttatagccttatctttttcctatgcttatcagacaaaatttgaatttttaaccttaaatttggagttgattttggggttttttcatcgaagtttatttttcagtctttgcttttatatcgttaagaacacgtatataaaagttttattcacaaattaTtttttatttgcaaatatatcatttggcttattccccgaataagcgaaacgatgagtccgttagtgtgtaaaaacattttttttgtttgattttaactagtgtcttgccctgatcttacagccgaggctgggcttgggccaccgatcgactcgctcacttactctgtttatcccgatttgcagacctccgtcaatatcatctcaatcaaggttatcaaatctgatgtgggttaccctatcagcgtcttcggtacagtgctagcaagggatcagtatgactatagatgtgtctatttgttcaggcgtggtagggacgatccccagatcatcaactcgccggttagtatttcatactatctcacaaatggggattgagtttttcttcttgaactttttacatggttgcataatatcacctcaccatgcatgggattattttgagaattgtttgaaatgtttatgaagtggtttgcacgcctccaccatatattctgctgctttaacttgttatatactgtaagaacaaactgtcttggctatataccacaaaaagattcatcaatccatctctcactttatgaaaataacaatgacacataatctgattagcgtgatgatatagaagttgacagtgctaaatatatcaagtcttggatcttctaatgacattaactgaattctcataagttgctaatgattaaattgcatgatctagagtagtatatctttgtcatttaatcggtccatactgcccataaaatgcatgagttggctttcatttttgtttgatcttttagttagactatgtcttatattagtctaacaagcacacatacatgagagaccgaccaatttatagaaattgggtttgtgccagactcaccaccaccaccaccaaaggttcaagtgagcaactgttttggttgtaaagagtttcagcacgttccaggtttcaagatgaaaagcttcaattaagtttcacagtaacttgggattcttgtgaagagcagatttctgggagctttatcatgctttaatgcaatggcgcgtaggtgatgctacaactagaatgattggaacactcgtcacctgagatctgataagtgtagttggacgattcattcgaaatgttatatggaccaagcatcttaaatctcaaatcgttccaagtgcaaaatgtatagaatggattgacattgaatttaagtagtttttggaggttacatatcaaactattgatctttgaaaattttgcacatacttgacacaggcagtcctccattggcaggacctcctaggtaaggaaaacattgtataa
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| CDS seq | atgcggatgctgcgacggagcagagtcttcgggagctcgcatcggaggaggaggaggaggaggaggaggaggagaaggctcgcgcggaggaatggtggagaagaaatcgacaaggagcccaccggcctccaggtcgccaccgccgccgccacctccgtcaatatcatctcaatcaaggttatcaaatctgatgtgggttaccctatcagcgtcttcggtacagtgctagcaagggatcagtatgactatagatgtgtctatttgttcaggcgtggtagggacgatccccagatcatcaactcgccggcagtcctccattggcaggacctcctaggtaaggaaaacattgtataa |
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| Protein seq | MRMLRRSRVFGSSHRRRRRRRRRRRRLARRNGGEEIDKEPTGLQVATAAATSVNIISIKVIKSDVGYPISVFGTVLARDQYDYRCVYLFRRGRDDPQIINSPAVLHWQDLLGKENIV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_08g0002140 | OsNaBo_08g0002140.01 | Chr08 | 1788755 | 1791681 | + | NAM | ||
| CDS seq | atgcggatgctgcgacggagcagagtcttcgggagctcgcatcggaggaggaggaggaggaggaggaggaggagaaggctcgcgcggaggaatggtggagaagaaatcgacaaggagcccaccggcctccaggtcgccaccgccgccgccacctccgtcaatatcatctcaatcaaggttatcaaatctgatgtgggttaccctatcagcgtcttcggtacagtgctagcaagggatcagtatgactatagatgtgtctatttgttcaggcgtggtagggacgatccccagatcatcaactcgccggcagtcctccattggcaggacctcctaggtaaggaaaacattgtataa
More
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| Protein seq | MRMLRRSRVFGSSHRRRRRRRRRRRRLARRNGGEEIDKEPTGLQVATAAATSVNIISIKVIKSDVGYPISVFGTVLARDQYDYRCVYLFRRGRDDPQIINSPAVLHWQDLLGKENIV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0133600 | SBH | 1.091430 | 3.057669 | 3.351169 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g04100 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0133600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0002400 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0002450 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0002440 | RBH | 0.0 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0002410 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0002260 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0028800 | SBH | 0.4680965 | 1.3507805 | 0.7719865 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0002140 | RBH | 0.0 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0033400 | SBH | 0.6154905 | 1.5435565 | 1.7396545 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0002260 | SBH | 0.042858 | 0.059230 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0002260 | SBH | 0.000000 | 12.749482 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0002050 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0002310 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0002220 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G002240 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0002100 | SBH | 2.031004 | 14.368293 | 7.738471 |
