Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_07g0024170 | OGI:07072830 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr07:25744945-25750072 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ccgcaacatttttttttcatttctaatcagtaatctgttaaaaggagtctgattagagcatacaaaatctgttaaaaggagtctgattagagcatacaagaccaaaatacagttctgtttacaaagttcacaaagaactagcttttttttaatccccgtaaaagaagtgcttttaaacagattacatggcacatttacttcctgtatccactgtactgattctcaagaaacataaaaagagcagggaacctaacaacaataataattgttcaagaaaaagaaaaacaagatatctgctttagcagaacagtacccattttgacccttccttggggccctctaaattttgtacatgataaaatgtcaggtctcccatgaattcctcactcgtaacaccacgcgcagtagcaatcgatcgcgatgaatagacagacatgaagctattactgggagaacaaatgccaatggtgatcgtgcgcagctaagtactccttgatcttctcgagcctcttgaggatctctaggaaagatggcctcagatggatatccccggaccagcatagctcaattaacctgcaatgaggaaatccatgttaaattaaggcgatcaagtgataagagactagttgaagtaagcatggctgttggaatgtttcagggttttgttttagcttgcacgtactcctttaactcgttagtaaatcccttcgaacgaaagggtgggcgatgcccttctcccacatactttgcggcttcataaggttcatagttagagaaaggtggatccccttcaagcatctacaatcagaggaacattttgtcatccagaacagaagtgatcatacgatataacttgctacttggtgcttgcttgcaagttttaggtggcaaagttacctcgtaaagtatcatagcaaacgagaagacatcaactttcttgtcatatttccggtgtttgaatacttcaggagccatgtaccggtctatgtgaatacagaaatcaaacaagttgtcaagatgaattcgaaagaagagatatgaggaaagatagtataacgcctgaacacttacagcttccagtctccccagtcatcttgtacacatcattggcatgctgggctttgataatcttgctaagaccaaaatctccaactttcaagtgattggcagcagaatttactagaagaatgtttctggatgtcgacacaatagattagagagaccaacccaggaaactacttgtattagcataaccacagaattcagcataccttggttttaagtcccggtgaattacaacattaggttcattatgaagataggccatgcccctgcaagatacaggtgattgtgggaaaagaacacgtgggtcaatgttcaataattagaggggggaaaaagaccacatgatcaattaagttagaatccactaaagcctttgttcagttaatcccaccaacaagggtattgaggtgtggaattaatccctcttaatcccctccggattaactgaacaaggtctaagggtaatgcatgatggttcaaagatgttatagtgttagcactataactagaaaatattatgatcgtgatgatacgctcatttcaagctgagtttatagcatttactacattagtgatgttggcagttcaaatggatctaatagatcattgacttgcattggtcttactgatcacttggatgccaagaaactttgtgtaaagcagaggtgttattccattagccagtatcctaaagatgaatctaactacagtccataaataggatttttttttataaccatagcctcaagtgcagaactagagtataatagagaatcattttactgtcaaaagggtatagttttttagcaaacgaaattcttgcacaagtcatattttcatccagattaggtgttttataaggctaaaagcacatctgcacgtgagagctgacaatacctggcaatgtctagtgcgaaattaacagcagttgctggggcaagtgcacctttctccttcaggtattgatgaaggtcgccctggaaaacacatttgaactcagcatttgcgagtattccaaacagtccaaatgacaagatattattacaaaagaatactcactcctcgtaaaaactcagtaacgagcattaaaggcttggtttctgtgactgctccaaggaactgcacaatatttggatgtctcagctttattagcaagttgacttcatgcttgaaatcttgtctgcataccccaaaaaaactgatgaggaatcattccaagaagcaaacatgttacacaaaactagaactgcttctattcaaaccttgaatattagttagttaaccagaatacatgcaaagtacatgtcctagacccctagttattcagttggaatactccaagattaataaatattagtgattaagtagatatagttcacttacatcaccagcctgtcatcagatagagatggaagaatgcgcttgacagcaataggtgttcctcgccagttggctttcagaatttcaccaaaagagccctgcagtagttgagatgtttggttaactcaaaataacacaacattaaatggactagtacatggtcacaatgcaatgggtatgttcatgaacttcctagtacggttaacttttattttcatttgtttatttaaacagccaaaacgatcttttatggcttcaagccatgcttaacagttaaacatctgttaatatccgctcatgtataccaatttctgcctctcaataggccagttcaagaggtacaaatccagtacctctgaatctcagttggcaaaatattcagagagttacagtaattaaaaaaggttttgatttcattgcagtaggaacaaaccaaatgctgcagaaattgaaacttcaatatgttagtgatcaaaatttctatctagaaatgaaaactgaaagcgcacagctggttcacagctaatataatggcaagttttgaacacccaactatctctatttgcatataacatctaaaaagatcatcctgcaatcaatttacatcaattgtgtgatcgattctcagtgtcagtgtgtcactacttcctatggataaccccattcagtttactttcatagcaatggtcatgttttcttaccaatgatttgcatgaaactaagataattagggaattatatacctttccgatgataacagcttttgagaaatccaactcaagagggttaatctcccagtcagccttgtttgttaggggtggtggaattgtctttggttcaaaatgacttccagttttcccctacaggagaaacaaaatcagaggaatccaatgtatttgagcacaatatcatactgcataaatcaataagcacaaaaagattaattagaaatttctaccctaaatagaagatttattttaactgcatggaacataacaatgtagttgtgctcaagatgcaccaaagttgcacatgaaacgaaaatagcaaaaaaggttctataaaactcattcatagcatattcggtatgattccaaaaagaacaatatcacaatatcagcatccatagcatatccagtatgatctccaaaagaacatcatcagagctttcattgacaatgatgaatttgttgtacatactgcagttgctagctgatgcttgtgtagcaccaccacaactgaatcctttggtaactcgtctaatattacgcgaaaattgccactggcacatccaaataccctgtttctacactaataacaatatttgcgaccatgtgcctggatcaagcttataaacattatgccaagaacagctgcagagcgatatacagggaactcacccactaattccataacatagagtgactggtggaatcggaatacctggtgttcaagttagaaatttagtaatgttgagctaacggttaaacctaaattcccctattactttgctaggcaaataaccaagacagactctcaaactgaacctaagtcaatggccacgtacatatgtcaatccaccatgttccttgagtagctcgatcatagcatgcctctttgcaccctccgcatcagcaagtggctgtacaacaagcaaaagtcagcattataaactgctatcccaaatacaaccacagtattacagttgactgaaatcccactgcatgcagaacaaatcagcagaccaaacacaaaagctctgtccaataacacgtgatagaccatttttcccatcaaaacttatcaccaaaccaaatcagcaatttaatggtccaatgcactaaatggaattcggcgaaatgtactatatccaagcgattaatagcaaacaaggctgaaactcgatgaagaattcattgcaggaacacgcattcaataacgagcatagcactagccccaagtcaatccacagcataagcttcaaaattcgtcaaacaagcaagctctaaccctacccaaagcgatccccaaaatccaatcgaatcaaaagcagcatattgcaaactaagaaccgtagctgatcgctttctctccgaaaccatcgattcgtcgcagaacaagccaaatccaatccgaacaaaaatccaaaaatagctcaaaccgaatccccaatccggatcatttcgatacaccatcccgaacagagcccaagccgcggcacgaccccaaatccaatccacaccgacgcaacacgcctccatttccagcgcgcgcagacgtcgcgagagagagggccgaggggcacggcgtgcctcaccgtgttctgccagcgatcctgggcgttgacgtcggcgccgttggcgatgaggcactcggcgacgtcgtgccacccgtggagcgcagcgacgtggagcggcgtgcggctgtcgtagtcgcgggcgttgacgagcgcggcgtcctcctccagcagcttccgcacggcgccggcgtcgttctggtgcgtgtgccacaggatcagcgacgtcctcgccacaagccccttgtcgtcgaaccgccgccgcgccccgctgctccccgacgaccccgcccctccccctccccgtccacctcctccgctccccccgctctcgctcccgcttccccctcccctcgccgccgccgcctcctcctccgccccgctcat
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| CDS seq | atgagcggggcggaggaggaggcggcggcggcgaggggagggggaagcgggagcgagagcggggggagcggaggaggtggacggggagggggaggggcggggtcgtcggggagcagcggggcgcggcggcggttcgacgacaaggggcttgtggcgaggacgtcgctgatcctgtggcacacgcaccagaacgacgccggcgccgtgcggaagctgctggaggaggacgccgcgctcgtcaacgcccgcgactacgacagccgcacgccgctccacgtcgctgcgctccacgggtggcacgacgtcgccgagtgcctcatcgccaacggcgccgacgtcaacgcccaggatcgctggcagaacacgccacttgctgatgcggagggtgcaaagaggcatgctatgatcgagctactcaaggaacatggtggattgacatatgggaaaactggaagtcattttgaaccaaagacaattccaccacccctaacaaacaaggctgactgggagattaaccctcttgagttggatttctcaaaagctgttatcatcggaaagggctcttttggtgaaattctgaaagccaactggcgaggaacacctattgctgtcaagcgcattcttccatctctatctgatgacaggctggtgatacaagatttcaagcatgaagtcaacttgctaataaagctgagacatccaaatattgtgcagttccttggagcagtcacagaaaccaagcctttaatgctcgttactgagtttttacgaggaggcgaccttcatcaatacctgaaggagaaaggtgcacttgccccagcaactgctgttaatttcgcactagacattgccaggggcatggcctatcttcataatgaacctaatgttgtaattcaccgggacttaaaaccaagaaacattcttctagtaaattctgctgccaatcacttgaaagttggagattttggtcttagcaagattatcaaagcccagcatgccaatgatgtgtacaagatgactggggagactggaagctaccggtacatggctcctgaagtattcaaacaccggaaatatgacaagaaagttgatgtcttctcgtttgctatgatactttacgagatgcttgaaggggatccacctttctctaactatgaaccttatgaagccgcaaagtatgtgggagaagggcatcgcccaccctttcgttcgaagggatttactaacgagttaaaggagttaattgagctatgctggtccggggatatccatctgaggccatctttcctagagatcctcaagaggctcgagaagatcaaggagtacttagctgcgcacgatcaccattggcatttgttctcccagtaa
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| Protein seq | MSGAEEEAAAARGGGSGSESGGSGGGGRGGGGAGSSGSSGARRRFDDKGLVARTSLILWHTHQNDAGAVRKLLEEDAALVNARDYDSRTPLHVAALHGWHDVAECLIANGADVNAQDRWQNTPLADAEGAKRHAMIELLKEHGGLTYGKTGSHFEPKTIPPPLTNKADWEINPLELDFSKAVIIGKGSFGEILKANWRGTPIAVKRILPSLSDDRLVIQDFKHEVNLLIKLRHPNIVQFLGAVTETKPLMLVTEFLRGGDLHQYLKEKGALAPATAVNFALDIARGMAYLHNEPNVVIHRDLKPRNILLVNSAANHLKVGDFGLSKIIKAQHANDVYKMTGETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGDPPFSNYEPYEAAKYVGEGHRPPFRSKGFTNELKELIELCWSGDIHLRPSFLEILKRLEKIKEYLAAHDHHWHLFSQ |
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| Function | Integrin-linked protein kinase 1 [UniProtKB/Swiss-Prot:F4IS56] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_07g0024170 | OsNaBo_07g0024170.01 | Chr07 | 25744945 | 25750072 | - | NAM | ||
| CDS seq | atgagcggggcggaggaggaggcggcggcggcgaggggagggggaagcgggagcgagagcggggggagcggaggaggtggacggggagggggaggggcggggtcgtcggggagcagcggggcgcggcggcggttcgacgacaaggggcttgtggcgaggacgtcgctgatcctgtggcacacgcaccagaacgacgccggcgccgtgcggaagctgctggaggaggacgccgcgctcgtcaacgcccgcgactacgacagccgcacgccgctccacgtcgctgcgctccacgggtggcacgacgtcgccgagtgcctcatcgccaacggcgccgacgtcaacgcccaggatcgctggcagaacacgccacttgctgatgcggagggtgcaaagaggcatgctatgatcgagctactcaaggaacatggtggattgacatatgggaaaactggaagtcattttgaaccaaagacaattccaccacccctaacaaacaaggctgactgggagattaaccctcttgagttggatttctcaaaagctgttatcatcggaaagggctcttttggtgaaattctgaaagccaactggcgaggaacacctattgctgtcaagcgcattcttccatctctatctgatgacaggctggtgatacaagatttcaagcatgaagtcaacttgctaataaagctgagacatccaaatattgtgcagttccttggagcagtcacagaaaccaagcctttaatgctcgttactgagtttttacgaggaggcgaccttcatcaatacctgaaggagaaaggtgcacttgccccagcaactgctgttaatttcgcactagacattgccaggggcatggcctatcttcataatgaacctaatgttgtaattcaccgggacttaaaaccaagaaacattcttctagtaaattctgctgccaatcacttgaaagttggagattttggtcttagcaagattatcaaagcccagcatgccaatgatgtgtacaagatgactggggagactggaagctaccggtacatggctcctgaagtattcaaacaccggaaatatgacaagaaagttgatgtcttctcgtttgctatgatactttacgagatgcttgaaggggatccacctttctctaactatgaaccttatgaagccgcaaagtatgtgggagaagggcatcgcccaccctttcgttcgaagggatttactaacgagttaaaggagttaattgagctatgctggtccggggatatccatctgaggccatctttcctagagatcctcaagaggctcgagaagatcaaggagtacttagctgcgcacgatcaccattggcatttgttctcccagtaa
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| Protein seq | MSGAEEEAAAARGGGSGSESGGSGGGGRGGGGAGSSGSSGARRRFDDKGLVARTSLILWHTHQNDAGAVRKLLEEDAALVNARDYDSRTPLHVAALHGWHDVAECLIANGADVNAQDRWQNTPLADAEGAKRHAMIELLKEHGGLTYGKTGSHFEPKTIPPPLTNKADWEINPLELDFSKAVIIGKGSFGEILKANWRGTPIAVKRILPSLSDDRLVIQDFKHEVNLLIKLRHPNIVQFLGAVTETKPLMLVTEFLRGGDLHQYLKEKGALAPATAVNFALDIARGMAYLHNEPNVVIHRDLKPRNILLVNSAANHLKVGDFGLSKIIKAQHANDVYKMTGETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGDPPFSNYEPYEAAKYVGEGHRPPFRSKGFTNELKELIELCWSGDIHLRPSFLEILKRLEKIKEYLAAHDHHWHLFSQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.529446 | 72.625763 | 15.372611 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0632800 | RBH | 6.257067 | 2.584890 | 11.613170 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g43900 | RBH | 4.231354 | 1.738554 | 2.989456 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0632800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0024420 | RBH | 1.181075 | 38.027531 | 6.161489 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0024470 | RBH | 1.169468 | 25.767380 | 7.155493 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0024340 | RBH | 3.422103 | 69.442955 | 24.799473 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0024270 | RBH | 0.684867 | 1.909014 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0024400 | RBH | 18.590399 | 39.655972 | 24.178427 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0431300 | RBH | 7.4792485 | 29.4599895 | 9.395294 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0024930 | RBH | 0.354221 | 2.700346 | 4.010689 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0442700 | RBH | 8.1206615 | 30.716081 | 9.630579 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0024180 | RBH | 0.671398 | 1.085003 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0024320 | RBH | 0.873398 | 22.144529 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0024250 | RBH | 7.215011 | 59.142330 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0024420 | RBH | 1.641763 | 4.339126 | 5.865598 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0024170 | RBH | 0.909481 | 32.319305 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G024150 | RBH | 1.048504 | 10.925138 | 6.104931 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0020480 | RBH | 11.933825 | 130.582458 | 4.180489 |
