Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_07g0023620 | OGI:07071800 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr07:25379773-25386897 | ||||||||
| Gene Symbol | OSK26, OSK27, OSK28 | ||||||||||
| DNA seq | atggcgaaggagaaggggaaggcggtgatgccgatggaggtggatcaggtggaggacgagagagaggccgagacggtggtggaggcggtgcagaaggcggtgtacgatgctttggagaaggtggagatgatggaggaggagggagaggccgcggtggcggaggcggcggataagttgctagaggaggcggtggagaaggcggtgacggaggcgttggaggaggcgttggaggaggcggggtgggacgcggcggagaaggcgttgtccgatgatttggagaaggtctcgctggaggcggagagcgctaggatgatcaccctcgagagctccgacggcgaggcggtcaaggtgaaggaggcgtcggcgaggctgtccaagaccatcgggaacatcatcgacgacggccgcggcgacgaggccatcccgctcccggacgtcagctacaagaccctcaagaaggtggtcgagtactgcgacaagcacgccgacgagaagtccgacaccgacgagcagaaagaggagctcaagaactgggacaaggccttcatcgacgagctggccgaggacgacgactccctcgtcaaggtcatcatggcctccaactacctcaaaatcgatggactccacaacctcgcctcccagtgcaagaccacccgcgagcagatcggcaaggcctgaaacatcgagatcgagctcggcgacaaggaggaggaggaggaggagaccggcccggagaacgtctgagtcttgaagtaatactcactaatctcttaacccgtagtgtcctcgtcgtgtaatggtggttctctcgtagttgtgtgttgtgcctctggtagattcagatcggatcggggagttcgtgcatcttgtccaagaagaacagagtcggctgtgtcgttgagtactttgtactgctggatcgcttgcatgaagtgaatattttgccccgaaattgtttgctgtgtctgcttggctttcatgcagttagtcttcttgttaaatgtttgctctatttctagctatctactcgttggcatctggttcgatgttgggattccaatccaggagattcggttgcagatttgcaacatttctcagtggtcagtgctcgatcgatcaggggatgtgtttcctgctcttgagtttgtattgggtgcaagtttggtgttgcattttgcttggattgtggttcggattaatttgagaaggggaaaaaacatcgttgaatttttatctggaattctgaatgctgctttcgcttcagagatacagattgatctgttcgaaatgatccatgcgtgtctgaattttcttctgcatctgaagcgtttcgtttcagatatgcatatggactccctagtatgttctgtgttgcattcttgtgcatctgaagcatttgtttcagaaatttggattgatcctccctaagtatgttatgggtttccggatctgaagcatttttcgtttcattgatgcatggacagatctagcagaagaatgttcttggtcgtttggttaagttaacccacttcatttccctgcatgtggtctgctttctcaagcattattaggatggtgtcctactgtgttgtttggttcataaaatttctgtacgtgttctgaattcctgagctctgctccagattagttagcaacaatccaatgcctgaacttttgccttttgttttgagacattatgagagctacagctacagcacctttgcttccttcttgtgtgtgttccatgtaaatttgctgtacaattgtaaatctgcttgagttggcgttgtctctgaacttgtgaacaggggattgcacagtttcagtcgacatgtacatttcttaaaatctggaacttaattttagagagaaaactgaagataactaattaccgtgtgattcaatgtaatccgagtttaatgctgtgtcagcagaactccaggtcactaggccttatttgggtgcctggaaggattcccagggccagatatctgtttgaatttcattaaaggtagaggacatgttcaattttgctttgattctagtgcaaaatgtactaagtggaaaaaatgcatcgtcgcagttttgtctgaatgctgcatttcgtttcagatatactcagtacgtgcgctttcaccaggagagtatggaggatgatgcagggatggattggaatcaatttcctcttgcctacagagaacgaaccagccctggcagattggtggatgaaagcgaggatggcttttcggacgggctacaggagcatcttcgacagtgttttcgcgctaacatgttggctgctgtggaaagaacgcaatgcgcgtgtctttgaacagaaatttcgaagcatagaacagcttgtgcaagatatcaaggaagaggccattgtctggaagacggcaggagtgttcacaacgtgcaatagcgagatcacgtaatatgcattgtaatttgtagaagttttctagcttacgggtcagggattttgccccaatctgttttcgacagcatactgtcgttgtaagctctttaattgtaatgtacccttcctttcttaatgaaattggtcgaccgaacctttcggccgacctggcaaaaaaaagatatactcagtacgttgtccgttgtttggttaattaacccaactccatgcgtatgcctgaattttcttctgcatctgaagcattttgtttcagatagcacttctgtatctgaagaatttcgtttctgagatgagattcatggacttatctcacagtaaggtgctgtttggttcggtaaaattcagcccgcacccgattccagcgcaaatagatccggttcccgttgtttgtttgagacgcttcgtaattggataccttggaacccattacggcccagttcagaggcgataccgctcgatcaggagcgataagcgttaacgatacggagaggcaacacgagaaagaatcaagcgtcgcctccgccgctcccctcgacccacgtgtgagaaccaaacaaaatctaagtttgccgtaatctgattacaatcacagtgctatctgatgtccttatcgttacgtttgcaatctccaaccaaacagcacctaagttctgagttgtttggtcaggttaacccaattccctgcatgtgctgtgcttctagttgaggcaggattccacgtagttgttttgctcaacttgtgcatcatgtttgcaagttgcaatgctaattgtgtttatgggctcctttggaatgctgaatgcatgaattttataaataatcacttcagttcagctcagttgccaattaaaatcagttaaacttcagttgctaattgaaaatcactaactcctttggggagctattatatgaatcagttaagctcagttgccaattgaaaacgaaagtgtccctatagaggaaattaattaacctcagttcacattctacacacctaatttaaaatttcagaaggaatctccttttcaagatgtagtatcaaagacgagtgatgtaataagttcagtgctaagttgccgaatgaaataatagtactgcagttttttgtggaaccaagcagcatgtgttatactctaccttgcaatttgtaggttaacaggaaaatggcgttacataatatttggtaaaatactcttgttaattagagccgaactagaaaaacccgtgtatgaacaagctgaaattaggcacattccttggttgctgtgatttcagtgttagttttacccatccacctactctaaaaagaaaattaagacggaaaaatttctctggagtcctaataacggaccacttgtcagtagttcataaatatgccggagacttccacttaaataataattggcgatacacgatcgtcaacgatcattgaaaagaaaaatatatatatactccaatatacagcaggagtttttcagtacgagaaaaaaaaactccacaaaacatataaacgtgaggagacttgacaaccgtacaaaaaactttgtacagtggtcagtggtgtggtcctcataaatgggccgattccattacaaattctcagcccatatacaacaaatcccccttgttccagtcggcccagaagccagcccaatctagcagcccaacacggcctggacaaaacagtagtccgtccagctggcgagccagctaggcttggagaagaggcttgaagcgaaagcgagcacgcctccaccgccggcgaggctatatatatcggcgaccccttctgcctccgacctcgcaccgatcaatccggctcgcgccaccgcatcgcattcgcatccacggcgagcgcttaggtagtcactagtcagtgcaaggagagctagggctcgatctttgtgagcgagtgatggcggaggagaaggggaaggggaaggaggagggagagggctccgcgatggcgtcgaaggcggcggggattctggtggtgccgagtgcggcgggggtggggaatgcgttgttggaggcgttcgcgaaggtggcggtggagaagaaggacgaggtcgcgacggtgtcggagctggtgcggaagctggtgtcggagggggtggcggaggaggtggcggtgaccgaggcgttggagcatccggtgtttgattcgccggagaaggtggtgcccgaggtggcggaggaggaggagagcggcggcaggatgatcaccctcaagagcttggacggcaagacggtcaaggtgaaggaggcgtcggcgaggctgtccgagaccatcgggaacctcatcgacgacggccgccgccgcggcgacgagaccatcccgcgcctgttcgtcagctacaaggccctcatgaaggtgatcgagtactgcgacgagcacgccaacaacaagggcgacaccgacgagcggaaagaggaactcaagaactgggacaaggccttcatcgacaagctggacgaggacaacatcctcttcgtcgaagtcctcgcggcctccaactacctcaaaatcactggactctccaaactcaccgaccaaaggttcgtcgacccgtttaacaccagcaacaagacccccgacgccgaggagacccgcgtcaacctcatcccggcgaacacctcagccacagcctcgacctcaaggccatcaacatcgacctcaagcccatcaacatcgacctcagcctcacactctgcgactaggagggggagggggaggaggagacactgagacactaccggagaacgtctgagtcttgaagtaacactcactttctctcttaacccgtcgtgtaatggtggttctctcgtcgttgcgtgttgtgtctctgctagattcagatcgaatcggggagttcgtgcatcctgtccaagaagaacagagtcggctgtgtcgttgagtactttgtactgctggatcgcttgcatgaagtgaatatttcgccccaaattgtttgctgtgtcttgttggctttcatgcagtcagtcttcttgttaaatgcttgctctgtttctaactctgtctactcgtgatgcttgggattccaaaccaagcgaattggtttcagatttgcagcatttctcagtactcggggatgttttcctgctcacaatttttattgggtgcaagtttgtgttgcgttttacttggattcaggtgcgaattgagttcaggagggtgaaaacatcgttgtgattttcatctgaatgctgcatttcgtttcagagatgcatgtactgttctgttcgaactgtaaaattttgccccaaattgtttgctgtctctgctcggttttcatggtgctagactactcggtctacttgttggcatgtggttcaattcgtttgtgggattccaatccaagggtttggatgcagattagcaaacatttctccgtgctcaaactgaccggggatgttttcctgttcatgaatttgtgtggcttgcgttttgcctgaattctggtgtgaactggacagataagggaaagtatctgctgcaaatttcgtttcatagatgtatttattgattagtaccgatgactaacggatcatcagttgtttagttcagttcttaacagtaactgatccttctttgttgcaaactgatccaactccctgcatgttttctaacttatcagataaagtttcagagatgttacaaactggtctttctgtttgtctatctgtatctgaattcttctggatatgaaacaattcgtttcagatatggatgtggattcttctgcatgtcacaatgtgttgcatttttctgcatctatagcattccgtttcagagatgaatgggcttatctgaagaatcatgcttgtaacttgcagggctaattgtgttcacgggcttgaatacatgacttttatatatagctttcgtgtgaactaattacttcagttaccataaatatcctgcaagatttctttatttcagaaggggactaactactcagaactcttttaggggattatcaacaaataaattaagttcagttgtcaattgaaaacaacaaaattcctagaaagaaaattcacacactctgtacgcctaatttgaaagttcacatgttttacaaaaataatactggctggtacaatactccctttcgagagatcatagacgagtgatatggggaaaaaaagtaagatgccgaatcaaatgaaccaaacaacatgagtgatatatctttcaattagcaggccaagtaacagggaaatggcgtgacatttttcttcttttgattgttgtgccgtttggctaaacctgtactggtatgatcatttctagtaaaagaaatgggggcctttgcccttgctcaaaaaaaaaaaacaatatgctggagactactttatcctcgatttaagcattgaatcgccatcgttgaagagAaaaagaatatattaatacagtatccactacgagttttcagtatgagaagaaaacaacatatacttcgtataaatctaaggatatctaacaaaccgtacaaatctagcccacgaccttctcctctgggccgtacccagcccaacctactggcccagcaaggcctgcaaatcacagtactctcctactcttggagaagaggaaatgcaacggccgccgcgaaggcgaaggcgaacacgtctccgtctccgggctgcgcctttaa
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| CDS seq | atggcgaaggagaaggggaaggcggtgatgccgatggaggtggatcaggtggaggacgagagagaggccgagacggtggtggaggcggtgcagaaggcggtgtacgatgctttggagaaggtggagatgatggaggaggagggagaggccgcggtggcggaggcggcggataagttgctagaggaggcggtggagaaggcggtgacggaggcgttggaggaggcgttggaggaggcggggtgggacgcggcggagaaggcgttgtccgatgatttggagaaggtctcgctggaggcggagagcgctaggatgatcaccctcgagagctccgacggcgaggcggtcaaggtgaaggaggcgtcggcgaggctgtccaagaccatcgggaacatcatcgacgacggccgcggcgacgaggccatcccgctcccggacgtcagctacaagaccctcaagaaggtggtcgagtactgcgacaagcacgccgacgagaagtccgacaccgacgagcagaaagaggagctcaagaactgggacaaggccttcatcgacgagctggccgaggacgacgactccctcgtcaaggtcatcatggcctccaactacctcaaaatcgatggactccacaacctcgcctcccactatctactcgttggcatctggttcgatgttgggattccaatccaggagattcggttgcagatttgcaacatttctcagtggtcagtgctcgatcgatcaggggatgtgtttcctgctcttgagtttgtattgggtgcaagtttggtgttgcattttgcttggattgtggcggcggggattctggtggtgccgagtgcggcgggggtggggaatgcgttgttggaggcgttcgcgaaggtggcggtggagaagaaggacgaggtcgcgacggtgtcggagctggtgcggaagctggtgtcggagggggtggcggaggaggtggcggtgaccgaggcgttggagcatccggtgtttgattcgccggagaaggtggtgcccgaggtggcggaggaggaggagagcggcggcaggatgatcaccctcaagagcttggacggcaagacggtcaaggtgaaggaggcgtcggcgaggctgtccgagaccatcgggaacctcatcgacgacggccgccgccgcggcgacgagaccatcccgcgcctgttcgtcagctacaaggccctcatgaaggtgatcgagtactgcgacgagcacgccaacaacaagggcgacaccgacgagcggaaagaggaactcaagaactgggacaaggccttcatcgacaagctggacgaggacaacatcctcttcgtcgaagtcctcgcggcctccaactacctcaaaatcactggactctccaaactcaccgaccaaaggttcgtcgacccgtttaacaccagcaacaagacccccgacgccgaggagacccgcaagaggaaatgcaacggccgccgcgaaggcgaaggcgaacacgtctccgtctccgggctgcgcctttaa
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| Protein seq | MAKEKGKAVMPMEVDQVEDEREAETVVEAVQKAVYDALEKVEMMEEEGEAAVAEAADKLLEEAVEKAVTEALEEALEEAGWDAAEKALSDDLEKVSLEAESARMITLESSDGEAVKVKEASARLSKTIGNIIDDGRGDEAIPLPDVSYKTLKKVVEYCDKHADEKSDTDEQKEELKNWDKAFIDELAEDDDSLVKVIMASNYLKIDGLHNLASHYLLVGIWFDVGIPIQEIRLQICNISQWSVLDRSGDVFPALEFVLGASLVLHFAWIVAAGILVVPSAAGVGNALLEAFAKVAVEKKDEVATVSELVRKLVSEGVAEEVAVTEALEHPVFDSPEKVVPEVAEEEESGGRMITLKSLDGKTVKVKEASARLSETIGNLIDDGRRRGDETIPRLFVSYKALMKVIEYCDEHANNKGDTDERKEELKNWDKAFIDKLDEDNILFVEVLAASNYLKITGLSKLTDQRFVDPFNTSNKTPDAEETRKRKCNGRREGEGEHVSVSGLRL |
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| Function | SKP1-like protein 4 [UniProtKB/Swiss-Prot:Q9LNT9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_07g0023620 | OsNaBo_07g0023620.01 | Chr07 | 25379773 | 25386897 | + | NAM | ||
| CDS seq | atggcgaaggagaaggggaaggcggtgatgccgatggaggtggatcaggtggaggacgagagagaggccgagacggtggtggaggcggtgcagaaggcggtgtacgatgctttggagaaggtggagatgatggaggaggagggagaggccgcggtggcggaggcggcggataagttgctagaggaggcggtggagaaggcggtgacggaggcgttggaggaggcgttggaggaggcggggtgggacgcggcggagaaggcgttgtccgatgatttggagaaggtctcgctggaggcggagagcgctaggatgatcaccctcgagagctccgacggcgaggcggtcaaggtgaaggaggcgtcggcgaggctgtccaagaccatcgggaacatcatcgacgacggccgcggcgacgaggccatcccgctcccggacgtcagctacaagaccctcaagaaggtggtcgagtactgcgacaagcacgccgacgagaagtccgacaccgacgagcagaaagaggagctcaagaactgggacaaggccttcatcgacgagctggccgaggacgacgactccctcgtcaaggtcatcatggcctccaactacctcaaaatcgatggactccacaacctcgcctcccactatctactcgttggcatctggttcgatgttgggattccaatccaggagattcggttgcagatttgcaacatttctcagtggtcagtgctcgatcgatcaggggatgtgtttcctgctcttgagtttgtattgggtgcaagtttggtgttgcattttgcttggattgtggcggcggggattctggtggtgccgagtgcggcgggggtggggaatgcgttgttggaggcgttcgcgaaggtggcggtggagaagaaggacgaggtcgcgacggtgtcggagctggtgcggaagctggtgtcggagggggtggcggaggaggtggcggtgaccgaggcgttggagcatccggtgtttgattcgccggagaaggtggtgcccgaggtggcggaggaggaggagagcggcggcaggatgatcaccctcaagagcttggacggcaagacggtcaaggtgaaggaggcgtcggcgaggctgtccgagaccatcgggaacctcatcgacgacggccgccgccgcggcgacgagaccatcccgcgcctgttcgtcagctacaaggccctcatgaaggtgatcgagtactgcgacgagcacgccaacaacaagggcgacaccgacgagcggaaagaggaactcaagaactgggacaaggccttcatcgacaagctggacgaggacaacatcctcttcgtcgaagtcctcgcggcctccaactacctcaaaatcactggactctccaaactcaccgaccaaaggttcgtcgacccgtttaacaccagcaacaagacccccgacgccgaggagacccgcaagaggaaatgcaacggccgccgcgaaggcgaaggcgaacacgtctccgtctccgggctgcgcctttaa
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| Protein seq | MAKEKGKAVMPMEVDQVEDEREAETVVEAVQKAVYDALEKVEMMEEEGEAAVAEAADKLLEEAVEKAVTEALEEALEEAGWDAAEKALSDDLEKVSLEAESARMITLESSDGEAVKVKEASARLSKTIGNIIDDGRGDEAIPLPDVSYKTLKKVVEYCDKHADEKSDTDEQKEELKNWDKAFIDELAEDDDSLVKVIMASNYLKIDGLHNLASHYLLVGIWFDVGIPIQEIRLQICNISQWSVLDRSGDVFPALEFVLGASLVLHFAWIVAAGILVVPSAAGVGNALLEAFAKVAVEKKDEVATVSELVRKLVSEGVAEEVAVTEALEHPVFDSPEKVVPEVAEEEESGGRMITLKSLDGKTVKVKEASARLSETIGNLIDDGRRRGDETIPRLFVSYKALMKVIEYCDEHANNKGDTDERKEELKNWDKAFIDKLDEDNILFVEVLAASNYLKITGLSKLTDQRFVDPFNTSNKTPDAEETRKRKCNGRREGEGEHVSVSGLRL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0625600 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g43220 | RBH | 0.0 | 0.386811 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0625600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0023900 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0023970 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0023830 | RBH | 0.0 | 0.0 | 1.988282 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0023760 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0023880 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0424600 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0024390 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0435300 | RBH | 0.018383 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0023640 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0023800 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0023700 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0023900 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0023660 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G023590 | RBH | 0.0 | 0.0 | 1.019865 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
