Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_07g0018600 | OGI:07061290 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr07:21366452-21368388 | ||||||||
| Gene Symbol | SDRLK-39 | ||||||||||
| DNA seq | gaacattattaatttgctttcttagtttcttgtaacatattttggtgtgcaattaattcttttgcgtgttccggaaaaaatgcatcatatatacagtagcctgaactttgctgatgctgtaatgtaatgtgatttaatttacatttttactccacaaagttcggtacagtgcactggtcaccggccttcgacgatggtgacggtgacgtcgttgacggtgcaggtggacgaccactcgccgtcggtcgagccgccgccgccgccgcggtcgctgcagaagcccgggtgcctcggctgcggcaccaccgcgctgaggttgcccagcatcatgaacaccgccgccatgtgcggccggtcctccggccgctcctgcacgcacaggagccccacctgcacgcaccgcagcacctccgacctgctgtacccgccgccgccgccgccgccgccgccgccgccgccggccaccgcctcgtcgagcagcgccagcgcgttgccctccctccacagcctccacgcctgcatccgcgcacgcacgcacgtttcgatcagttctcgagcaaattttcagcgaactttttcgaattcttgatcgctgcttacgtggctgagcaggctcgtctgctcgccgctgctgtacatcccgcggttcttccggccgctgacgagctccagcaccagcacgccgaagctgaacacgtcggacttcaccgagaacacgccgtccatcgcgtactccggcgacatgtacccactgccgattcgccgttgttaccatcacagctcagaatttagcagctatgtagtagagtatatctgaagatcatcagagtcagtgtcgtgctcactatgtcccgacgacttttctggtgtgcgagtcggtgtcgtcgccgaagatcctcgcgacgccgaagtcggagatcttggggttcatgtctccgtcgagcaggatgttgccggccttgagatccctgtggatgatcttgaaccgggagtcctggtgcagatacaggaggccccgtgcgatgccgagtatgatgttgaatcgcttcgaccagttcagctgagctgatcgagccttgtctgcacaaaatcacacccatcaaatttcatctgcaatgaatcaatatggcgccaaaaatgttcaggcaattatctgggtgttcagtaccgaagatgaagttgtcgaggctcttgttctccatgtactcgtacaccagcatcctctcctcgccatggatgcagcagccgagaagcctgacaaggttcacatgctggagcctcgcgatgagcatgacctcgttcttgaactcgtccagcccctgcgtcgagaatttcgacagcctcttcactgccactgtctgccctccatccaattctccctgatgaatttcgcatcatgcaaattgttctcaaactttcaatcaaaatcaccaatgtgtgtgatatcagaaatgtatctgccttgattttttatgtttttttttaccttgtagacaggaccaaaaccaccttcaccgagcttagccaagttcgcgaaattgtcagtggagaaggctatcgtgttgaagtcaaagagagtgacattcaattcgttgctgtgcctggtttcatcctccattttcctgtcttggacttgattcagagggatacttgagtcaaatgaggtgaacctttgaggactctgaaatctcactggatttgcaactgtagttagtattcaggttagcacatggattaactgaaaaatgctcatttttctcctgtcagacagacagaaggaagacttgggagttggaagaacctttgtttctgaataacttgtcccagacgaagaatgcagccaacgccagaagaacaacaccagataggcttaggacaacagcgagcactgtgtttttcctgctggaatcatccccattggttgctgtcagagtcat
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| CDS seq | atgactctgacagcaaccaatggggatgattccagcaggaaaaacacagtgctcgctgttgtcctaagcctatctggtgttgttcttctggcgttggctgcattcttcgtctgggacaagttattcagaaacaaagtgagatttcagagtcctcaaaggttcacctcatttgactcaagtatccctctgaatcaagtccaagacaggaaaatggaggatgaaaccaggcacagcaacgaattgaatgtcactctctttgacttcaacacgatagccttctccactgacaatttcgcgaacttggctaagctcggtgaaggtggttttggtcctgtctacaagggagaattggatggagggcagacagtggcagtgaagaggctgtcgaaattctcgacgcaggggctggacgagttcaagaacgaggtcatgctcatcgcgaggctccagcatgtgaaccttgtcaggcttctcggctgctgcatccatggcgaggagaggatgctggtgtacgagtacatggagaacaagagcctcgacaacttcatcttcgacaaggctcgatcagctcagctgaactggtcgaagcgattcaacatcatactcggcatcgcacggggcctcctgtatctgcaccaggactcccggttcaagatcatccacagggatctcaaggccggcaacatcctgctcgacggagacatgaaccccaagatctccgacttcggcgtcgcgaggatcttcggcgacgacaccgactcgcacaccagaaaagtcgtcgggacatatgggtacatgtcgccggagtacgcgatggacggcgtgttctcggtgaagtccgacgtgttcagcttcggcgtgctggtgctggagctcgtcagcggccggaagaaccgcgggatgtacagcagcggcgagcagacgagcctgctcagccacgcgtggaggctgtggagggagggcaacgcgctggcgctgctcgacgaggcggtggccggcggcggcggcggcggcggcggcggcggcggcgggtacagcaggtcggaggtgctgcggtgcgtgcaggtggggctcctgtgcgtgcaggagcggccggaggaccggccgcacatggcggcggtgttcatgatgctgggcaacctcagcgcggtggtgccgcagccgaggcacccgggcttctgcagcgaccgcggcggcggcggcggctcgaccgacggcgagtggtcgtccacctgcaccgtcaacgacgtcaccgtcaccatcgtcgaaggccggtga
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| Protein seq | MTLTATNGDDSSRKNTVLAVVLSLSGVVLLALAAFFVWDKLFRNKVRFQSPQRFTSFDSSIPLNQVQDRKMEDETRHSNELNVTLFDFNTIAFSTDNFANLAKLGEGGFGPVYKGELDGGQTVAVKRLSKFSTQGLDEFKNEVMLIARLQHVNLVRLLGCCIHGEERMLVYEYMENKSLDNFIFDKARSAQLNWSKRFNIILGIARGLLYLHQDSRFKIIHRDLKAGNILLDGDMNPKISDFGVARIFGDDTDSHTRKVVGTYGYMSPEYAMDGVFSVKSDVFSFGVLVLELVSGRKNRGMYSSGEQTSLLSHAWRLWREGNALALLDEAVAGGGGGGGGGGGGYSRSEVLRCVQVGLLCVQERPEDRPHMAAVFMMLGNLSAVVPQPRHPGFCSDRGGGGGSTDGEWSSTCTVNDVTVTIVEGR |
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| Function | Receptor-like serine/threonine-protein kinase SD1-8 [UniProtKB/Swiss-Prot:O81905] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_07g0018600 | OsNaBo_07g0018600.01 | Chr07 | 21366452 | 21368388 | - | NAM | ||
| CDS seq | atgactctgacagcaaccaatggggatgattccagcaggaaaaacacagtgctcgctgttgtcctaagcctatctggtgttgttcttctggcgttggctgcattcttcgtctgggacaagttattcagaaacaaagtgagatttcagagtcctcaaaggttcacctcatttgactcaagtatccctctgaatcaagtccaagacaggaaaatggaggatgaaaccaggcacagcaacgaattgaatgtcactctctttgacttcaacacgatagccttctccactgacaatttcgcgaacttggctaagctcggtgaaggtggttttggtcctgtctacaagggagaattggatggagggcagacagtggcagtgaagaggctgtcgaaattctcgacgcaggggctggacgagttcaagaacgaggtcatgctcatcgcgaggctccagcatgtgaaccttgtcaggcttctcggctgctgcatccatggcgaggagaggatgctggtgtacgagtacatggagaacaagagcctcgacaacttcatcttcgacaaggctcgatcagctcagctgaactggtcgaagcgattcaacatcatactcggcatcgcacggggcctcctgtatctgcaccaggactcccggttcaagatcatccacagggatctcaaggccggcaacatcctgctcgacggagacatgaaccccaagatctccgacttcggcgtcgcgaggatcttcggcgacgacaccgactcgcacaccagaaaagtcgtcgggacatatgggtacatgtcgccggagtacgcgatggacggcgtgttctcggtgaagtccgacgtgttcagcttcggcgtgctggtgctggagctcgtcagcggccggaagaaccgcgggatgtacagcagcggcgagcagacgagcctgctcagccacgcgtggaggctgtggagggagggcaacgcgctggcgctgctcgacgaggcggtggccggcggcggcggcggcggcggcggcggcggcggcgggtacagcaggtcggaggtgctgcggtgcgtgcaggtggggctcctgtgcgtgcaggagcggccggaggaccggccgcacatggcggcggtgttcatgatgctgggcaacctcagcgcggtggtgccgcagccgaggcacccgggcttctgcagcgaccgcggcggcggcggcggctcgaccgacggcgagtggtcgtccacctgcaccgtcaacgacgtcaccgtcaccatcgtcgaaggccggtga
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| Protein seq | MTLTATNGDDSSRKNTVLAVVLSLSGVVLLALAAFFVWDKLFRNKVRFQSPQRFTSFDSSIPLNQVQDRKMEDETRHSNELNVTLFDFNTIAFSTDNFANLAKLGEGGFGPVYKGELDGGQTVAVKRLSKFSTQGLDEFKNEVMLIARLQHVNLVRLLGCCIHGEERMLVYEYMENKSLDNFIFDKARSAQLNWSKRFNIILGIARGLLYLHQDSRFKIIHRDLKAGNILLDGDMNPKISDFGVARIFGDDTDSHTRKVVGTYGYMSPEYAMDGVFSVKSDVFSFGVLVLELVSGRKNRGMYSSGEQTSLLSHAWRLWREGNALALLDEAVAGGGGGGGGGGGGYSRSEVLRCVQVGLLCVQERPEDRPHMAAVFMMLGNLSAVVPQPRHPGFCSDRGGGGGSTDGEWSSTCTVNDVTVTIVEGR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 5.433743 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0550500 | SBH | 0.513497 | 0.570850 | 0.209521 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g36544 | SBH | 0.326072 | 0.360526 | 0.050645 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0550500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0018900 | RBH | 0.0 | 7.186677 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0018830 | RBH | 0.0 | 0.746809 | 0.221556 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0018770 | RBH | 0.0 | 0.000000 | 0.689684 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0018670 | RBH | 0.000000 | 0.019322 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0018720 | RBH | 0.000000 | 3.563321 | 4.858223 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0357200 | SBH | 0.9144775 | 3.3202 | 1.040089 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0019200 | RBH | 0.000000 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0369300 | SBH | 1.06621 | 13.0895455 | 0.015084 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0018530 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0018630 | RBH | 0.125881 | 3.053409 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0018500 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0018800 | RBH | 0.000000 | 0.000000 | 0.316429 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0018630 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G018480 | RBH | 0.0 | 0.372464 | 0.246933 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0018630 | RBH | 0.0 | 6.045707 | 0.000000 |
