Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_07g0012960 | OGI:07044140 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr07:15066296-15071214 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctcctcgttccctcacctcagcgccgccgccgccgcaagccccgccgccgccgtccgtcctcccctcgacgtcgcctttcgctctccccccgtggtcgccgtgcgccatcccccgccgccgccgtgcgtcatctggcgccggtcccccttcccccttcttcgccctcccctcgcggcggtggcgtaaccgacgccggtttccccctcccctcgtggcggcgtctgagtcggctccggtgctcccctccctcttccatcccctttcgacggcgtcggggatggcggcaacgccggtggtggtggcggtgtcaggtgcgggtagaaaggagctggtgacgggcggggacaaggcgtcccgatctgcactgactcgatctgcgcgagccaaccccgcgccggattgaatagggtatgaggggagaggacggcggcatgggaggatgaagaggacaacgccgatggagaaaggggtgaggttgcccggcgggggatgctggccttcaccgacgcgtggctCcccccgccgcggccgtcgtcgaccgtcctccacccgtcgtcgccaccccccccccccttctcccctatctcgggcctcttcccgacctcatgcctgcacgagcgccggccgcgtcccgtgctcctctcctggcggcggcgtcggagccggcgcccggtgccgtcctcccttctggatcgatggatttggaggtagtaccggcggtggcggtgttgggaggaatctatatgagtatttcactttcattcctcctctcactctcactaccgatcgggagcgcggagtggtgatggtggcgatgtcggagcgggggtgctggtcgcgtccatggctcacctcatcagggcacgcgccatccgcgccggcaccatcatccgcgtcctcgactatctctttatcgactccgacatcaacacaaggtgaccatacaaatccttcctgctttcgatcgatctcatctcgctgctataatcatgtatcagaccagatgcctgcctggctgatcgatcttttcaaggagccgctctttgatcattttaatgtatgtgtgtgcacgttttgactgctatcggggaaattttggttaatttccttttttcattctaactgctaggtaaaattttattctgaaatgctctgccgaaattcgttttttcgagttctaaacggcgctagggaaggactgatgaataacagggcctgctctttactgatccagggcagaaattaaatctaaaaaattaaccaaagtctggtctaTttttgtatagtagcagctcttgtccagtttatttacatcaggcaacattctaaagtgatgaaatgcggatgaaatcaaacggatgatctacttgttcatattgataaattaaatattacacattatcaacctaacaaatgatgtagtttaagaaagtttttagcaaatcatgtttttataagcatggagtaaataatccatgtcaatcatccgattaacaacctgtttagaatgggacattgttagctatttcTttttgttacttgaaactttgaaagtttcaagtattacaacatgtgtcaacacttactgaaaattgaatccataactaacttttcctatcatatcttggtttctcagttcagggtcattatcgtccagcaacttgaattgctgcaaactgagtgtgcactgatcggtactagcaatactcatgcgagcccagtaaactttatctcacatggaaccatgcatttcctttccattgtgagctgtccccggcatgttgctactgggtacctgttctgaccgacgtggtggagtggtgatgttgcagaacgcgtacaacatgctccacagcgacatggtggcggccgtgcgtatggcgcacacatgctgtatgttccttgacgagctcagcaccacatacctctttcctgcccaccacaacgtcaacgtgagcacattcagatctcccaactttataaaagaaattgcatcttaattcaaagatagtttcttgcacctcttcgatgcttcatatctggagatttgggtagtggaaattgtctacaacgacctatctctgattttggagtcgatactaaataatcaagagaatgggcttgttttgttttgttttttttgtttctagagtgggatatggaaacacctagcccaccgtctaagatgagatgttgtctaggataatagttgtaattggtagatgggatattgcagggctatgagagggtaaatgatccctctgtgtaataggggaggggagtttatttctagggtgaactaaaccatccaaacaagcaagtgcaattctgaacagaaagtaaggtaattgactgcaacatctatcaccgaatagatggtgaaatgaagatcttaggcttttttgccacttgaattgtagtttctaaatacatgtccactgatatatctgaaccatagctacttttcacggacaaactagcttcatatgtatgaaacatggcaatgaaaatgttgcttgattcctggattctgacctactggatttggatgcatcctctttcctttgaagtgttagccatcatctgcaaaagtattgcattcccaagctctttggatggcctggtgccaaaattgaagaacatcatgtactgtgttggagagtgcaaaccattcaaggcaccacaaaacatatctcctctgttctttgtagatgttgtattaggatacatgcaatcgaagattcaaacatcagattctttaccagctaaaatatcaaaaaatattaagacttggcagtttagttatctttttactaattcttatagatatatgattagaaaaatagaatggtaaaaacatgggtattcgacactctcgcagtgtactagacaagtaaaaaaggacactagggagtataaatcagtcagcacatatttcattttggcacttgatatttggtgccacctcacctgtcatatcatggttttgttgttttccaccttactttcaggacagtgcaaatgtaccaaacaacacagatgtttgcattgatgtgtaccatacccttcagttcaaaatttcgcttacatgatacaagcagatagcagcagactccggtccttctcgTttttgtatttgagaaagtattctgccatagttccttttagggttgctaacttacttgccattttaccccacgttatatatgatgtattgtttggcaggaaaacgtcaatcgaggtcattccagttcagaaagaaaaatacaatttctttactatccattcatgaagaattgtacattacagagttttaaagtaaattgaaaaacgattgcaccacaaaccactttttatttaaatttgttgtacctactacatctcatattgttaaatgtcaggtcaacatactggggatatatacatgacaaaagaacagagcaaactccttttttatccaagtcattattcactgaagtggagttgtttctcagagacctcactaatagggtgagcttacaagactgatcattgttagtcttcagctggaaactaagcaaaagatgtcatactgttgtaaccatgtttgaagacaatttcgttgcctcttgtttgaagatggcaattgtcataatgcgtggtttgtcaaaaatatgtccactgtgacatgcgtatatgtattaataatttgtcagttatttgtacctatctgTtttgcctagatgattattgtaaatgctcttatcgcaatgtaccatcctgtattattcatgttattactgatataatcttgcgcgcggcgtggcgccgcgccatagcccatctagtgctatgcaacaactgatcctgatgtcttgggctttggcagtgattggtgggcactgggcatagtgtatgggtgactaggcaacggtaagactgccggtgagcagaacaatggtgatagcgttggttgcatttggtgttaattgcaggcatgtgcctggccgtaggtttctgttttgctcatagttcatggtaagagtggacgaggaaccatgccaacaaaagcatataaatgtatttttgaaaaacttatgtaccatcggatattagtcaaccactttatcctgtccagccattattggatattagtctaccactttaacctgtccagccattatttttctatcagagaattaacagataaaggagaaatatggacccatcagtgctctcatatacttagtggcagttgagtttcatcaatgctctctcgtaaggtgatgagattattaggaaaatttcaaatagtcccacctgagcacatctctacgttgtagagtttcacaagtaagaaatgcatctccattctgatttttatacaatattttttttaccctgcctatgaaaaaccgatttttttatttatagtaattaataagtcttgaattaaataagtggtaaatcttaaattgaatttgtaaaaataggatggacgttgtttcaaagggcatccagatttggacgctgttctaagaagtgtccagaggtggacgctgtaccgaagcacgtccaggctcggtttggggcgcccatgccgccatgcggagaggcgtcatcgttgactctcctctcctcgggcccaatgttggtgcagggctcgggcaaggtgctgccatccccgccgttcacctcgactctgggagactgcaacggccgccttccagtttccgcctccacaacgtcaggaatctgccgttgcagttcacctcaactcacctcgaaggctctcgaatctggagaggacgccgccgctttctgccttcacgccgggagatcattgccgctatccacgttctggttgagtcatgctggaacaataacccactcgtgccggcttgtattgtgtcgtctgtccgcccctcttggttcctaa
More
|
||||||||||
| CDS seq | atggctcacctcatcagggcacgcgccatccgcgccggcaccatcatccgcgtcctcgactatctctttatcgactccgacatcaacacaagggtcattatcgtccagcaacttgaattgctgcaaactgagtgtgcactgatcggtactagcaatactcatgcgagcccaaacgcgtacaacatgctccacagcgacatggtggcggccgtgcgtatggcgcacacatgctgtatgttccttgacgagctcagcaccacatacctctttcctgcccaccacaacgtcaacagtgggatatggaaacacctagcccacctgttagccatcatctgcaaaagtattgcattcccaagctctttggatggcctggtgccaaaattgaagaacatcatgtactgtgttggagagtgcaaaccattcaaggcaccacaaaacatatctcctctgtcaacatactggggatatatacatgacaaaagaacagagcaaactccttttttatccaagtcattattcactgaagtggagttgtttctcagagacctcactaataggatggcaattgtcataatgcgtggatggacgttgtttcaaagggcatccagatttggacgctgttctaagaagtgtccagaggtggacgctgtaccgaagcacgtccaggctcggtttggggcgcccatgccgccatgcggagaggcgtcatcgttgactctcctctcctcgggcccaatgttggtgcagggctcgggcaaggtgctgccatccccgccgttcacctcgactctgggagactgcaacggccgccttccagtttccgcctccacaacgtcaggaatctgccgttgcagttcacctcaactcacctcgaaggctctcgaatctggagaggacgccgccgctttctgccttcacgccgggagatcattgccgctatccacgttctggttgagtcatgctggaacaataacccactcgtgccggcttgtattgtgtcgtctgtccgcccctcttggttcctaa
More
|
||||||||||
| Protein seq | MAHLIRARAIRAGTIIRVLDYLFIDSDINTRVIIVQQLELLQTECALIGTSNTHASPNAYNMLHSDMVAAVRMAHTCCMFLDELSTTYLFPAHHNVNSGIWKHLAHLLAIICKSIAFPSSLDGLVPKLKNIMYCVGECKPFKAPQNISPLSTYWGYIHDKRTEQTPFLSKSLFTEVELFLRDLTNRMAIVIMRGWTLFQRASRFGRCSKKCPEVDAVPKHVQARFGAPMPPCGEASSLTLLSSGPMLVQGSGKVLPSPPFTSTLGDCNGRLPVSASTTSGICRCSSPQLTSKALESGEDAAAFCLHAGRSLPLSTFWLSHAGTITHSCRLVLCRLSAPLGS |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_07g0012960 | OsNaBo_07g0012960.01 | Chr07 | 15066296 | 15071214 | + | NAM | ||
| CDS seq | atggctcacctcatcagggcacgcgccatccgcgccggcaccatcatccgcgtcctcgactatctctttatcgactccgacatcaacacaagggtcattatcgtccagcaacttgaattgctgcaaactgagtgtgcactgatcggtactagcaatactcatgcgagcccaaacgcgtacaacatgctccacagcgacatggtggcggccgtgcgtatggcgcacacatgctgtatgttccttgacgagctcagcaccacatacctctttcctgcccaccacaacgtcaacagtgggatatggaaacacctagcccacctgttagccatcatctgcaaaagtattgcattcccaagctctttggatggcctggtgccaaaattgaagaacatcatgtactgtgttggagagtgcaaaccattcaaggcaccacaaaacatatctcctctgtcaacatactggggatatatacatgacaaaagaacagagcaaactccttttttatccaagtcattattcactgaagtggagttgtttctcagagacctcactaataggatggcaattgtcataatgcgtggatggacgttgtttcaaagggcatccagatttggacgctgttctaagaagtgtccagaggtggacgctgtaccgaagcacgtccaggctcggtttggggcgcccatgccgccatgcggagaggcgtcatcgttgactctcctctcctcgggcccaatgttggtgcagggctcgggcaaggtgctgccatccccgccgttcacctcgactctgggagactgcaacggccgccttccagtttccgcctccacaacgtcaggaatctgccgttgcagttcacctcaactcacctcgaaggctctcgaatctggagaggacgccgccgctttctgccttcacgccgggagatcattgccgctatccacgttctggttgagtcatgctggaacaataacccactcgtgccggcttgtattgtgtcgtctgtccgcccctcttggttcctaa
More
|
|||||||
| Protein seq | MAHLIRARAIRAGTIIRVLDYLFIDSDINTRVIIVQQLELLQTECALIGTSNTHASPNAYNMLHSDMVAAVRMAHTCCMFLDELSTTYLFPAHHNVNSGIWKHLAHLLAIICKSIAFPSSLDGLVPKLKNIMYCVGECKPFKAPQNISPLSTYWGYIHDKRTEQTPFLSKSLFTEVELFLRDLTNRMAIVIMRGWTLFQRASRFGRCSKKCPEVDAVPKHVQARFGAPMPPCGEASSLTLLSSGPMLVQGSGKVLPSPPFTSTLGDCNGRLPVSASTTSGICRCSSPQLTSKALESGEDAAAFCLHAGRSLPLSTFWLSHAGTITHSCRLVLCRLSAPLGS
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.193291 | 0.239631 | 1.903514 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0454200 | RBH | 1.824060 | 1.165228 | 2.338899 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g27130 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0454200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0013420 | RBH | 0.161819 | 0.231228 | 2.666697 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0013310 | RBH | 0.000000 | 1.785192 | 1.723135 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0013280 | RBH | 0.000000 | 0.000000 | 4.604837 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0013190 | RBH | 0.132849 | 0.028666 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0013040 | RBH | 4.091277 | 2.044542 | 7.428535 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0286000 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0013540 | RBH | 0.234985 | 0.000000 | 1.685419 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0267000 | RBH | 0.130016 | 0.2539795 | 0.1003885 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0013020 | RBH | 0.049207 | 0.089978 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0013100 | RBH | 0.116065 | 0.906732 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0013120 | RBH | 3.846253 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0013320 | RBH | 0.557330 | 0.051779 | 0.052502 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0013130 | RBH | 0.028891 | 1.128596 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G013110 | RBH | 0.113228 | 1.338877 | 0.473761 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
