Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_07g0010560 | OGI:07033120 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr07:11203746-11204606 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcagcgtatgcaaataattaaaaacatgcatggacatacatacctcctgttttcaagatattcccggatctcatcagtcagatgtctttcgcttagttctgctagctcatagatgtgcttctgcttattaacttcaatcaggatactcttcaaaactttctctatatcaggtttccgacccactgaaacaaaacaagcatagctaaattgcactctaagcaagccaaaaacttctttggcaagagttgtcttgcctaatcctccaaacccaacaaccgataccatcttgagcttctGggatgactcatcgttcctcatggacaactttttcactagatcaccacttgccttgtcaacaccaacaggcttggtgacattgtcatgaagtttcaagatgcgagggtcgataattgttggaagcttagaagcaacatcatctgcattgtacatatcatgttgttccatagcttccttgacttggatcatgtcatgtttgatgtcattggctattttgtggtggttctttagcttggacaatgacttacaatgcttgtcaattaaccacgtgaagtcatgctttttgcgtgccccaaaatcatcgacacatagcatgaatgtgtcaacattgtcctcgatgtcataagatagctccctaacatctctagcccaaatcttgatttgactgttaagttgatctagtggcatctttgagatcttctcaaccttagcttgcatgctcttgagctcaaaagtgaggaatgcgatcccctccttcacactattttgtagtgcatactcttccatgagcagcttgcacagcttggggatgagtgcggccattacccctgtggggaactccat
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| CDS seq | atggagttccccacaggggtaatggccgcactcatccccaagctgtgcaagctgctcatggaagagtatgcactacaaaatagtgtgaaggaggggatcgcattcctcacttttgagctcaagagcatgcaagctaaggttgagaagatctcaaagatgccactagatcaacttaacagtcaaatcaagatttgggctagagatgttagggagctatcttatgacatcgaggacaatgttgacacattcatgctatgtgtcgatgattttggggcacgcaaaaagcatgacttcacgtggttaattgacaagcattgtaagtcattgtccaagctaaagaaccaccacaaaatagccaatgacatcaaacatgacatgatccaagtcaaggaagctatggaacaacatgatatgtacaatgcagatgatgttgcttctaagcttccaacaattatcgaccctcgcatcttgaaacttcatgacaatgtcaccaagcctgttggtgttgacaaggcaagtggtgatctagtgaaaaagttgtccatgaggaacgatgagtcatccCagaagctcaagatggtatcggttgttgggtttggaggattaggcaagacaactcttgccaaagaagtttttggcttgcttagagtgcaatttagctatgcttgttttgtttcagtgggtcggaaacctgatatagagaaagttttgaagagtatcctgattgaagttaataagcagaagcacatctatgagctagcagaactaagcgaaagacatctgactgatgagatccgggaatatcttgaaaacaggaggtatgtatgtccatgcatgtttttaattatttgcatacgctga
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| Protein seq | MEFPTGVMAALIPKLCKLLMEEYALQNSVKEGIAFLTFELKSMQAKVEKISKMPLDQLNSQIKIWARDVRELSYDIEDNVDTFMLCVDDFGARKKHDFTWLIDKHCKSLSKLKNHHKIANDIKHDMIQVKEAMEQHDMYNADDVASKLPTIIDPRILKLHDNVTKPVGVDKASGDLVKKLSMRNDESSQKLKMVSVVGFGGLGKTTLAKEVFGLLRVQFSYACFVSVGRKPDIEKVLKSILIEVNKQKHIYELAELSERHLTDEIREYLENRRYVCPCMFLIICIR |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_07g0010560 | OsNaBo_07g0010560.01 | Chr07 | 11203746 | 11204606 | - | NAM | ||
| CDS seq | atggagttccccacaggggtaatggccgcactcatccccaagctgtgcaagctgctcatggaagagtatgcactacaaaatagtgtgaaggaggggatcgcattcctcacttttgagctcaagagcatgcaagctaaggttgagaagatctcaaagatgccactagatcaacttaacagtcaaatcaagatttgggctagagatgttagggagctatcttatgacatcgaggacaatgttgacacattcatgctatgtgtcgatgattttggggcacgcaaaaagcatgacttcacgtggttaattgacaagcattgtaagtcattgtccaagctaaagaaccaccacaaaatagccaatgacatcaaacatgacatgatccaagtcaaggaagctatggaacaacatgatatgtacaatgcagatgatgttgcttctaagcttccaacaattatcgaccctcgcatcttgaaacttcatgacaatgtcaccaagcctgttggtgttgacaaggcaagtggtgatctagtgaaaaagttgtccatgaggaacgatgagtcatccCagaagctcaagatggtatcggttgttgggtttggaggattaggcaagacaactcttgccaaagaagtttttggcttgcttagagtgcaatttagctatgcttgttttgtttcagtgggtcggaaacctgatatagagaaagttttgaagagtatcctgattgaagttaataagcagaagcacatctatgagctagcagaactaagcgaaagacatctgactgatgagatccgggaatatcttgaaaacaggaggtatgtatgtccatgcatgtttttaattatttgcatacgctga
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| Protein seq | MEFPTGVMAALIPKLCKLLMEEYALQNSVKEGIAFLTFELKSMQAKVEKISKMPLDQLNSQIKIWARDVRELSYDIEDNVDTFMLCVDDFGARKKHDFTWLIDKHCKSLSKLKNHHKIANDIKHDMIQVKEAMEQHDMYNADDVASKLPTIIDPRILKLHDNVTKPVGVDKASGDLVKKLSMRNDESSQKLKMVSVVGFGGLGKTTLAKEVFGLLRVQFSYACFVSVGRKPDIEKVLKSILIEVNKQKHIYELAELSERHLTDEIREYLENRRYVCPCMFLIICIR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 9.182467 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0294100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g19320 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0294100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0010910 | RBH | 0.0 | 4.334478 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0010850 | RBH | 0.0 | 0.702742 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0010860 | RBH | 0.0 | 7.822671 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0010780 | RBH | 0.0 | 0.072869 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0010790 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0201300 | RBH | 0.0700535 | 0.3114945 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0011260 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0202400 | SBH | 0.024543 | 0.0091115 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0010740 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0010810 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0010750 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0011060 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0010860 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G010800 | RBH | 0.0 | 1.413660 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
