Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_07g0004830 | OGI:07012410 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr07:4199989-4205970 | ||||||||
| Gene Symbol | FLO22 | ||||||||||
| DNA seq | atggcctcgccgccgccggagcgggcgccggcggcggaggctcgccggcgcaggacgacggtgtaccacggccaccgccgaccgtctccgcaccgccccaccgtccgaggcggcgtattctccgacctccgcgccaccaccgccgcctcctcccaaccgaggcctccctcctcctcctcctcctccgccccattccgcctcgccgactgggacccctcctcctcctcctcctccacgccttctccttccgccaccgcggccgcccgccgcctctccccgctcgcgcggttcctcctcgacgcgctccaccgccaccagcgctGgggcccgcccgtcgtcgcggaactcaccaagctccgccgcgtggcccccgagctcgtcgccgaggtcctcagcgctcgcccgccgccgcccccgccgctcgcgctcccgttcttcctgtgggcgggAcggcagaaGggcttCcgccactgcttcccggcgttccacgcgctcgcctcgctcctctccgccgctgggctccccgccgcggccgaccagcttcccgacctcatgcgagcccatggcaagccggtctcgcattcccagctcaacctcctcgtcaggctccacaccggcgcgcgtcgcccgctccgcgcgctccacgccctccgccgcttccgccacgagttctccgtgcagcctgaggtccacgcctgcaaccgcgtgctgggagcgctggctgcggctGggcatgttgatgataccctcaagctgttcgacgAaatgtcgcactgcagtgtgcggcctatgccggtgacattcgcgatcatggtgcgtgcgctggcgcgggcggggatgacggataaactcctggagatgattgggAggatgcgggctgaggtgtgcagaccGgatgtgtttgtgtacaccgcactggtgaagacgatggttcgctGggggcatatggagggttgcatcagggtttgggaggagataagaagggatcatgtggatccagatacaatggcttacaccacaatgatagctgggctatgcaatgcgggaatggtggagaaGgcagaagaattgtttggggagatgaggaggaagggtttgctggtggacaggatggtgtatgcgtctctcattgatgggtatgtctccacaggaagggtcagcgatggttgtagagtGttgaaagagatggtGgatgctggttaccgtgcagacctggggatctataacacactgattggcGggctatgtgagatagagcgggaggataaagcacacaagatgtttcagattgtcgttcaggaggatctaataccaagctccgagactgtttcaccattgctGgctcgttatgccgataagggcgagatggttaagttttttggattggttgatAaactagtggagctaagcttgcctatagttgaaattttagtggacttcctgaagctctttgcatgcaagagtggcaatgaattgaaggctgtggaagtttttaatgctttcagaagaagggggcattatagtgttGgcatttataacattctcattgagaatctgctgaagatcaaggagaggaagaaagcacttgtgttgttcgaggaaatgcaaagttcagatgactgcaagccggactcatgtacAtatagccatatgatcccatgttttgtggacgaaggaaatattgaagaggcttgctcgtgctacaacttgatgatgAaggcagtttggataCcaagcaTttcagcctattgtgctcttgtgaaagggttgtgcaaaaaaggagagataaatgcagctatttcacTtgttaaggattgtcttGggaatgtggaaaaTgggccaatGgaattcaagtacaCcttgactattcttgaagcttgccaatcAaaaagcccagagaaggtcatcaaagtggtGgacgaaatgattgagttaGgttattccatagaaGaaattatatattctgctattatttatggtttctgcaagtatgcaagttcaactgaggcaagaaaagtactatctaccatgagagatcgcaatattatttcagaagccaattatAttgtttatgaggatatgttgaatgagcatttgaagaatgtcactgcagatttggtgatatctggattgaaatttttggatcttgaatctaaATtAaaatggagAagcAgagatgattgagAaatctttGtacagttgctacatactaggtacaacctgCttcacttcacttgtgatttgtgctatttagatAttgtaTtatgtgttacctcttgtgagttgaacattgcattatgtAAtaaatagtcctaaacacttctaGggatctcataacctggttattccatggtatgtttagctagagttgatatccatgggcctctggTttgtaCcaaattatggataattcatacttcatactgatcctgatcatttttctcaagtatttttttTaAGaaaacacaaatctggtattccaccAaaaaagtcAacatgtgggagtggacgtggatgagtttGggaacccttgttgtgcttatccctccatagatttatcatgagaaaatttaatgatactgtagtatgtagaacAtaagtatgtatgttacttgacagacaGttatttggaaaattcatgcctgcataatgttgtgtaaattcatgcctgcataatgttgtgggcatataggagatattgagtaaccaatgatggttctcacagactcacacagtcacactaacgaatgggcctgatcactttacattattggtgacattatgcagagaaagtaggtaaaggtagaagtatacaagttctctaatgagcaacgacggcactacagatgaatgagccttacagcataggtgTtttttgtttacacaatttggaggaacaagcagtgtatacaaccagttccttctgAGtttgtagtttgagcaggccAacttggtctgaggcatgttagaacttagaaagatgtgagttgcaagctgagaaaatatgatttgagtactgattagctaacctcaagcaGcttggttcttgccctcccatatcaagtcccgatgcttaataaaaacagagtgcatggTttcctgccgtttaacattcAttgtttatttatcttcaatttacgagctggtgttgagagcctgaactaatggactaattttgtgagtcaactcttccatgataTgtcctccgTtttagtatttaggattcgactggaccaTttatgcaaacacacaacactgacacctatgtccccagttggccagtcacttggTtaatGgttacataaatccatgcacacccttgcttgtagctaagtaTtatttcattttacttttaaattcaagattgccaatcttttgtgtaattgctaatagcagtactgtattttgacatagcagagataattaaagcaatttTCctcgttttgttttatcatgtctcaatattttatgcatgtatggtaaatggtaatgtGccttcatccctgtatcctactacatatgttgtaccattagcaagttaaagaaacacgcacaccAaaaaaaaaaaactgacTcggtccctatatatgggcaagtggtactcaaatgaagtagTAtatcagtcccaacttctttcaggacggtaatgatagcgtttcattttactggggagctgattcttatcagtgacatgacactgttgaatctttaaagggtgtggaatctggatcgcttcctctctacattcctttaaggtacacactaccaatcgtgcaatAggatctgcAcgtattgttataattaggtatctgctccttattaccatgttAaacctcagtaacttgatcaGgtttcttcttcacaaccacccctggaGaactagcttccttagatgaGgtgAaaaagccaatccagccaactggtcgtacaagtgagatccatctggtgcagcctggaaGgttgatggcttgatacagaggtaaactagcattaattcttatagTtaatcttttcAgcagtactccgttattctgtcatctacccTatagttcaccaacacagtgttacattcatcattcctcattgatcGgtcaggatcgtctcccacagatccgatgccccaggtcgctcccacctccctcAcggcctcaccccatcaatcatgcgtcacaaaatgtgctctagcgagagatcAttagactagaatagttcatttcGgtcatggaactgtacttcaccttctatgttacagtggtactttgattatcAattccatttggtactcatgccgatccagatttggtgcttatcattttcatttggtactcatgcttcAataattcttgctttgatgaattgttgctgatccacatctttCAtgattaatgtAacatagtctgtagtagcagtttaaaactgaatcagtagcagtttaaaattggaaccaagcgcattctccatgggatgccttAaatgactgattagtgcatgaaGtaggcttaaattgcagtcaaaatcagtataatgcGttagaagcagatgatttctagatacTttatttaaggccactaTtacagtttaaaccatataaactaataggaaaCcatttgctctgagttgccatgtcttataAGaatgcgttgctgtgagatgctccggaaaaaaaatctttaacctttcggcataatatatttttaactgAAatactttacacatgcattagttatgtcctctaagatcatgAaattcagtttattactgtCcatttatgaatattccAactattttgccagatgatgaaaagcagcttgaggttttgaatctatgcaagtttgttcttacTgttctgatGgtacaccttatttcaggtaCctaaaaTtgtccttttattcagtagtccTttcattaggtcAataagctccTtttttgtgttgccactgagtgtccttcatttgtTGttagagactacagtccgaaatttctgattatttaggcagttagaagtcccgagcagcggcaaccGggtctcgCccagcctccgctcccaagctttgagatttgagaatcccgggtaggggcagtggaagccgagggtgccaccatccatAaatttctgtctgtaaattatcacacTTtttaggactaaaacttcggtattgtgaAGgAaaacaagAaatgatatttattttatgccattctttAaattttggtatctaatatgAagcttaaaaaacacgtgcgtgatgtattttaaattgtataatctatattatcatatattgttgtcatagcgttagcacgagcatattactagtcttaataaattcatgacatgatcttccctcttctgaatatgtagtttttctttctttCtttccTtttcttttttcttacttcaagagataaattgtaggagtcagcattacattgcgtctcgtcatcaatgatatgtattcaacccgtagatgcgcatgtcttgTgtttttgcaatcctattccaagtcgatcaataactgcctaataagaaaccaatagataggccaatcatagtgctatttagccatcgctgtgatataattataaattatgctttcttgttgcttgtctgctttgcactgcaattaagatgtcattgttggaacagAaacttgtttgccggggcacacaataaTttagatatgAAAAaaaaaacatgtgtcttgtcTtgttcTttgcagtgtgatttcatttcaattcgccgactatataTttcctgaagccaagaGgggcaatcaggcgcatgccagacatgggcataactgttggcatatggcgttaggtataaccgttaatgcatcctGACgccgacgggttgctgtggatgtctgtgtacAttcctcttgaTtgtcaccAattattttccagcatGgggcgtcctgaTGtgtaagtggctgcattgatcgttgatgcatgcatggactttgTtttgtagtgttggataaa
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| CDS seq | atggcctcgccgccgccggagcgggcgccggcggcggaggctcgccggcgcaggacgacggtgtaccacggccaccgccgaccgtctccgcaccgccccaccgtccgaggcggcgtattctccgacctccgcgccaccaccgccgcctcctcccaaccgaggcctccctcctcctcctcctcctccgccccattccgcctcgccgactgggacccctcctcctcctcctcctccacgccttctccttccgccaccgcggccgcccgccgcctctccccgctcgcgcggttcctcctcgacgcgctccaccgccaccagcgctGgggcccgcccgtcgtcgcggaactcaccaagctccgccgcgtggcccccgagctcgtcgccgaggtcctcagcgctcgcccgccgccgcccccgccgctcgcgctcccgttcttcctgtgggcgggAcggcagaaGggcttCcgccactgcttcccggcgttccacgcgctcgcctcgctcctctccgccgctgggctccccgccgcggccgaccagcttcccgacctcatgcgagcccatggcaagccggtctcgcattcccagctcaacctcctcgtcaggctccacaccggcgcgcgtcgcccgctccgcgcgctccacgccctccgccgcttccgccacgagttctccgtgcagcctgaggtccacgcctgcaaccgcgtgctgggagcgctggctgcggctGggcatgttgatgataccctcaagctgttcgacgAaatgtcgcactgcagtgtgcggcctatgccggtgacattcgcgatcatggtgcgtgcgctggcgcgggcggggatgacggataaactcctggagatgattgggAggatgcgggctgaggtgtgcagaccGgatgtgtttgtgtacaccgcactggtgaagacgatggttcgctGggggcatatggagggttgcatcagggtttgggaggagataagaagggatcatgtggatccagatacaatggcttacaccacaatgatagctgggctatgcaatgcgggaatggtggagaaGgcagaagaattgtttggggagatgaggaggaagggtttgctggtggacaggatggtgtatgcgtctctcattgatgggtatgtctccacaggaagggtcagcgatggttgtagagtGttgaaagagatggtGgatgctggttaccgtgcagacctggggatctataacacactgattggcGggctatgtgagatagagcgggaggataaagcacacaagatgtttcagattgtcgttcaggaggatctaataccaagctccgagactgtttcaccattgctGgctcgttatgccgataagggcgagatggttaagttttttggattggttgatAaactagtggagctaagcttgcctatagttgaaattttagtggacttcctgaagctctttgcatgcaagagtggcaatgaattgaaggctgtggaagtttttaatgctttcagaagaagggggcattatagtgttGgcatttataacattctcattgagaatctgctgaagatcaaggagaggaagaaagcacttgtgttgttcgaggaaatgcaaagttcagatgactgcaagccggactcatgtacAtatagccatatgatcccatgttttgtggacgaaggaaatattgaagaggcttgctcgtgctacaacttgatgatgAaggcagtttggataCcaagcaTttcagcctattgtgctcttgtgaaagggttgtgcaaaaaaggagagataaatgcagctatttcacTtgttaaggattgtcttGggaatgtggaaaaTgggccaatGgaattcaagtacaCcttgactattcttgaagcttgccaatcAaaaagcccagagaaggtcatcaaagtggtGgacgaaatgattgagttaGgttattccatagaaGaaattatatattctgctattatttatggtttctgcaagtatgcaagttcaactgaggcaagaaaagtactatctaccatgagagatcgcaatattatttcagaagccaattatAttgtttatgaggatatgttgaatgagcatttgaagaatgtcactgcagatttggtgatatctggattgaaatttttggatcttgaatctaaATtAaaatggagAagcAgagatgattga
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| Protein seq | MASPPPERAPAAEARRRRTTVYHGHRRPSPHRPTVRGGVFSDLRATTAASSQPRPPSSSSSSAPFRLADWDPSSSSSSTPSPSATAAARRLSPLARFLLDALHRHQRWGPPVVAELTKLRRVAPELVAEVLSARPPPPPPLALPFFLWAGRQKGFRHCFPAFHALASLLSAAGLPAAADQLPDLMRAHGKPVSHSQLNLLVRLHTGARRPLRALHALRRFRHEFSVQPEVHACNRVLGALAAAGHVDDTLKLFDEMSHCSVRPMPVTFAIMVRALARAGMTDKLLEMIGRMRAEVCRPDVFVYTALVKTMVRWGHMEGCIRVWEEIRRDHVDPDTMAYTTMIAGLCNAGMVEKAEELFGEMRRKGLLVDRMVYASLIDGYVSTGRVSDGCRVLKEMVDAGYRADLGIYNTLIGGLCEIEREDKAHKMFQIVVQEDLIPSSETVSPLLARYADKGEMVKFFGLVDKLVELSLPIVEILVDFLKLFACKSGNELKAVEVFNAFRRRGHYSVGIYNILIENLLKIKERKKALVLFEEMQSSDDCKPDSCTYSHMIPCFVDEGNIEEACSCYNLMMKAVWIPSISAYCALVKGLCKKGEINAAISLVKDCLGNVENGPMEFKYTLTILEACQSKSPEKVIKVVDEMIELGYSIEEIIYSAIIYGFCKYASSTEARKVLSTMRDRNIISEANYIVYEDMLNEHLKNVTADLVISGLKFLDLESKLKWRSRDD |
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| Function | Pentatricopeptide repeat-containing protein At4g20740 [UniProtKB/Swiss-Prot:Q9SVH3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_07g0004830 | OsNaBo_07g0004830.01 | Chr07 | 4199989 | 4205970 | + | NAM | ||
| CDS seq | atggcctcgccgccgccggagcgggcgccggcggcggaggctcgccggcgcaggacgacggtgtaccacggccaccgccgaccgtctccgcaccgccccaccgtccgaggcggcgtattctccgacctccgcgccaccaccgccgcctcctcccaaccgaggcctccctcctcctcctcctcctccgccccattccgcctcgccgactgggacccctcctcctcctcctcctccacgccttctccttccgccaccgcggccgcccgccgcctctccccgctcgcgcggttcctcctcgacgcgctccaccgccaccagcgctGgggcccgcccgtcgtcgcggaactcaccaagctccgccgcgtggcccccgagctcgtcgccgaggtcctcagcgctcgcccgccgccgcccccgccgctcgcgctcccgttcttcctgtgggcgggAcggcagaaGggcttCcgccactgcttcccggcgttccacgcgctcgcctcgctcctctccgccgctgggctccccgccgcggccgaccagcttcccgacctcatgcgagcccatggcaagccggtctcgcattcccagctcaacctcctcgtcaggctccacaccggcgcgcgtcgcccgctccgcgcgctccacgccctccgccgcttccgccacgagttctccgtgcagcctgaggtccacgcctgcaaccgcgtgctgggagcgctggctgcggctGggcatgttgatgataccctcaagctgttcgacgAaatgtcgcactgcagtgtgcggcctatgccggtgacattcgcgatcatggtgcgtgcgctggcgcgggcggggatgacggataaactcctggagatgattgggAggatgcgggctgaggtgtgcagaccGgatgtgtttgtgtacaccgcactggtgaagacgatggttcgctGggggcatatggagggttgcatcagggtttgggaggagataagaagggatcatgtggatccagatacaatggcttacaccacaatgatagctgggctatgcaatgcgggaatggtggagaaGgcagaagaattgtttggggagatgaggaggaagggtttgctggtggacaggatggtgtatgcgtctctcattgatgggtatgtctccacaggaagggtcagcgatggttgtagagtGttgaaagagatggtGgatgctggttaccgtgcagacctggggatctataacacactgattggcGggctatgtgagatagagcgggaggataaagcacacaagatgtttcagattgtcgttcaggaggatctaataccaagctccgagactgtttcaccattgctGgctcgttatgccgataagggcgagatggttaagttttttggattggttgatAaactagtggagctaagcttgcctatagttgaaattttagtggacttcctgaagctctttgcatgcaagagtggcaatgaattgaaggctgtggaagtttttaatgctttcagaagaagggggcattatagtgttGgcatttataacattctcattgagaatctgctgaagatcaaggagaggaagaaagcacttgtgttgttcgaggaaatgcaaagttcagatgactgcaagccggactcatgtacAtatagccatatgatcccatgttttgtggacgaaggaaatattgaagaggcttgctcgtgctacaacttgatgatgAaggcagtttggataCcaagcaTttcagcctattgtgctcttgtgaaagggttgtgcaaaaaaggagagataaatgcagctatttcacTtgttaaggattgtcttGggaatgtggaaaaTgggccaatGgaattcaagtacaCcttgactattcttgaagcttgccaatcAaaaagcccagagaaggtcatcaaagtggtGgacgaaatgattgagttaGgttattccatagaaGaaattatatattctgctattatttatggtttctgcaagtatgcaagttcaactgaggcaagaaaagtactatctaccatgagagatcgcaatattatttcagaagccaattatAttgtttatgaggatatgttgaatgagcatttgaagaatgtcactgcagatttggtgatatctggattgaaatttttggatcttgaatctaaATtAaaatggagAagcAgagatgattga
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| Protein seq | MASPPPERAPAAEARRRRTTVYHGHRRPSPHRPTVRGGVFSDLRATTAASSQPRPPSSSSSSAPFRLADWDPSSSSSSTPSPSATAAARRLSPLARFLLDALHRHQRWGPPVVAELTKLRRVAPELVAEVLSARPPPPPPLALPFFLWAGRQKGFRHCFPAFHALASLLSAAGLPAAADQLPDLMRAHGKPVSHSQLNLLVRLHTGARRPLRALHALRRFRHEFSVQPEVHACNRVLGALAAAGHVDDTLKLFDEMSHCSVRPMPVTFAIMVRALARAGMTDKLLEMIGRMRAEVCRPDVFVYTALVKTMVRWGHMEGCIRVWEEIRRDHVDPDTMAYTTMIAGLCNAGMVEKAEELFGEMRRKGLLVDRMVYASLIDGYVSTGRVSDGCRVLKEMVDAGYRADLGIYNTLIGGLCEIEREDKAHKMFQIVVQEDLIPSSETVSPLLARYADKGEMVKFFGLVDKLVELSLPIVEILVDFLKLFACKSGNELKAVEVFNAFRRRGHYSVGIYNILIENLLKIKERKKALVLFEEMQSSDDCKPDSCTYSHMIPCFVDEGNIEEACSCYNLMMKAVWIPSISAYCALVKGLCKKGEINAAISLVKDCLGNVENGPMEFKYTLTILEACQSKSPEKVIKVVDEMIELGYSIEEIIYSAIIYGFCKYASSTEARKVLSTMRDRNIISEANYIVYEDMLNEHLKNVTADLVISGLKFLDLESKLKWRSRDD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.506661 | 0.000000 | 1.751176 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0179000 | RBH | 1.419812 | 1.624989 | 1.630131 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g08180 | RBH | 0.411585 | 0.527409 | 0.171197 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0179000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0004980 | RBH | 0.367003 | 2.797587 | 1.690562 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0004940 | RBH | 0.182004 | 0.0 | 0.338627 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0004840 | RBH | 0.480088 | 0.0 | 2.371088 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0004770 | RBH | 0.082363 | 0.067095 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0004880 | RBH | 2.063931 | 0.0 | 5.710208 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0069400 | RBH | 2.0855225 | 4.0487085 | 3.553197 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0005400 | RBH | 0.195921 | 0.151963 | 0.065625 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0072500 | RBH | 2.022097 | 3.673378 | 8.2967925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0004860 | RBH | 0.074875 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0004880 | RBH | 0.481594 | 1.989164 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0004920 | RBH | 0.000000 | 4.149087 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0004990 | RBH | 0.056416 | 0.507910 | 0.245165 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0004850 | RBH | 0.083408 | 1.476751 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G005050 | RBH | 0.306038 | 0.316074 | 0.460155 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0037140 | SBH | 2.104459 | 1.957925 | 0.387478 |
