Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_07g0001730 | OGI:07004220 | 10/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr07:1407134-1407682 | ||||||||
| Gene Symbol | PR1b | ||||||||||
| DNA seq | atggagagcgttccaaggaaaggagcttcctgccagtgctttgctgtggtggtgacggccattgttttgatggcagccacgtcggcggccggggaggacacggcgcaggacttcgtggacctgcacaacgcggtgagggacgaagtcggcgtggaggaggtgacgtgggacgacaccgtggcggcgtacgcggagtcctacgcggcgcagtgccaagccgactgccagcctgtaagctcgaacaacggaacagccacctacggggagaacatctacgtagtcgtcggccccgccggcggcaacgacacgtcgtcgtcgccggccgccgcggccgtgggcgcttgggcggcggaggagcagtggtacgaccccgacaccaacggctgctcggcgccggcgggggagtcgtgcgaccactacacgcagctggtgtggaacgccaccacggccatcggctgcgccgaggtcgtctgcgacggcgacgccggcgtcttcgtcatctgcaactactacccgccgggcaacatcccagaccagagcccctactag
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| CDS seq | atggagagcgttccaaggaaaggagcttcctgccagtgctttgctgtggtggtgacggccattgttttgatggcagccacgtcggcggccggggaggacacggcgcaggacttcgtggacctgcacaacgcggtgagggacgaagtcggcgtggaggaggtgacgtgggacgacaccgtggcggcgtacgcggagtcctacgcggcgcagtgccaagccgactgccagcctgtaagctcgaacaacggaacagccacctacggggagaacatctacgtagtcgtcggccccgccggcggcaacgacacgtcgtcgtcgccggccgccgcggccgtgggcgcttgggcggcggaggagcagtggtacgaccccgacaccaacggctgctcggcgccggcgggggagtcgtgcgaccactacacgcagctggtgtggaacgccaccacggccatcggctgcgccgaggtcgtctgcgacggcgacgccggcgtcttcgtcatctgcaactactacccgccgggcaacatcccagaccagagcccctactag
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| Protein seq | MESVPRKGASCQCFAVVVTAIVLMAATSAAGEDTAQDFVDLHNAVRDEVGVEEVTWDDTVAAYAESYAAQCQADCQPVSSNNGTATYGENIYVVVGPAGGNDTSSSPAAAAVGAWAAEEQWYDPDTNGCSAPAGESCDHYTQLVWNATTAIGCAEVVCDGDAGVFVICNYYPPGNIPDQSPY |
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| Function | Pathogenesis-related protein 1B [UniProtKB/Swiss-Prot:P07053] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_07g0001730 | OsNaBo_07g0001730.01 | Chr07 | 1407134 | 1407682 | + | NAM | ||
| CDS seq | atggagagcgttccaaggaaaggagcttcctgccagtgctttgctgtggtggtgacggccattgttttgatggcagccacgtcggcggccggggaggacacggcgcaggacttcgtggacctgcacaacgcggtgagggacgaagtcggcgtggaggaggtgacgtgggacgacaccgtggcggcgtacgcggagtcctacgcggcgcagtgccaagccgactgccagcctgtaagctcgaacaacggaacagccacctacggggagaacatctacgtagtcgtcggccccgccggcggcaacgacacgtcgtcgtcgccggccgccgcggccgtgggcgcttgggcggcggaggagcagtggtacgaccccgacaccaacggctgctcggcgccggcgggggagtcgtgcgaccactacacgcagctggtgtggaacgccaccacggccatcggctgcgccgaggtcgtctgcgacggcgacgccggcgtcttcgtcatctgcaactactacccgccgggcaacatcccagaccagagcccctactag
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| Protein seq | MESVPRKGASCQCFAVVVTAIVLMAATSAAGEDTAQDFVDLHNAVRDEVGVEEVTWDDTVAAYAESYAAQCQADCQPVSSNNGTATYGENIYVVVGPAGGNDTSSSPAAAAVGAWAAEEQWYDPDTNGCSAPAGESCDHYTQLVWNATTAIGCAEVVCDGDAGVFVICNYYPPGNIPDQSPY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0127700 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g03680 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0127700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0001820 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0001820 | SBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0001700 | SBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0001670 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0001760 | SBH | 0.0 | 19.248026 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0026200 | SBH | 0.708206 | 0.818399 | 0.0582185 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0001820 | SBH | 0.0 | 0.467017 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0022300 | RBH | 0.002944 | 0 | 0.009764 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0001720 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0001790 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0001770 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0038160 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0001760 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G001800 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0001740 | SBH | 0.0 | 10.390947 | 0.0 |
