Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_06g0027590 | OGI:06082110 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr06:30129928-30133073 | ||||||||
| Gene Symbol | OsPP2C59, PP2C59, OsPP91 | ||||||||||
| DNA seq | tgagtatctcttttttcgagagcaggtctcgatctgcttgatgagtctgggaaataatcaccttatttcctcctgagcggttacctgagcaactcttagcaccatccaaactctttggagtttccccaacacatctgatttttcttggaatacaaTtttttttttttttgctttcttagcttcttgtttgtctcactttgctgatttaatagattaacgtttgcatataatctcaattttcaggttcattttcaactgcaaattcagaatgtacttaaaaacatcattactcaagagacacaaactctctagaatggcacatatatcattacatcaagtttagtagaaagctacatcatatgattgatgaccaacacttaacctgcgattgcaagttgccctcaaacaagatcagggcaacgcaagcaacgaaggagatggcaaaaaacacatcccccgacaagttacaatgttcagctacagaagcatccacagatgacacttatgacagatgcatcatctgcttggcacaagacaaccataaggtcgaagaaacttgcaagagcaatgaagaacggtgtgtatggaagagagctatgattgatatgttaggaggcttgatcattcgtcggtctctctggcaggtgattctcctgctccaagaaacggacgacgaggcaggtgatgttgtctgcgcttcccctctgtgaggcctcctggaggagcttctttgcagcctgctctgaatccagaattggcttcaccatggccacagcttcctgggatcacacgagaacacatgttattgcttcatttttttcacaagagaacacatgttattacttgcatttcatataggagattttgagaaattaaaaatacatttcagataggagatttggagattgaaaaaacatgtcattagtactttattactggcttcagacttcagagttcagaaacatgcatttcagagaggagatttggataaattaaaatgattcagagatcagaaacatgcatttcagaaagatatttggagaaattaaaatgattcagagtgagatttggagaaattaaaatgattcagagttcagaaacatgcatttcagagaggagatttggagaaattaaaattagtgtgtacctcgttggtcaccacgtcccagaggccatcactagcaaggatgaggaactcgagagagctgtcgaccacctcctcctgtacagatcaaataagcagataaatgtcgaatttcgatttgcaacagtacataacgtaatatggtcgtatcctgaaatcgttcatggcctctatgcatatactttctttatgagctgcatgaattatgaatttgagattggaagaaacttgaggaccttgatctctggatcagcaaccacatattgcttcaggagtttgtcaccaaatgctcgagagacagcaagaacaccacccacgcgccatgttcctacaaaatttccgccaacagaattttagcatttttatagattaaggacttggtgttcaatgtcgaaaaaaagggtaaatgtagcatcagcacaatgaatagatcaagagttgaaataccagcccacatcacaaaaccaccagcatcctctatcctctgcctctcgtctgactgatcaggcttgtggtctcttgacacagctatagctgcatcatcaagatgaaataatgcatcacaaaactgaggtttcaatcattttagaagcaaattgtaataggtaatatagagttgctcggttgacacaacgaacattcatgatacagaccaggacaggacattggttgaaaaacatgtacaggtgaagcacttacgctatctgcccaacaatcagtaaagtaaacatgaattgaaatgttcttaatcttaccatctcctcctctacaaatgacagccctagaatctccaacatttgcaacgagcagacggtcgcctacgagaattgcagtggaggcagtcgaccctgcatctcgattgtggctggtttcagctttcagaagttcagagtccgtgctagtgtaagtttcagctgcaggacagaatgttcagggaattaaacatccaaagtgcaaacaaaaTttttgggtgaagtagtttgctttagagAaaatagacatagataaatagcacaataccaattgcagacttggtatcactgaataactttgggtgcttgattaaattggtgaagaggttctgcttgacgaattctgctgctcgagctccaccatgacctgcagaaaacaaaccacgtagtattacgatcagtaatcactgaataagcaggtgacgatatttatttaagtcaacacaaaacactaattgcatcatgaaaaagcatcagattaccatcaaagacaccaaacagtccaacggtctctccatcgacaccatcaattctggtgtcatagaagtcctccatggaggatctttttccaggagagctcgcataaccatagctaaatttaccatttgcactgtcatgataacacaagaagaacaacaatatcaggtaataataacagaaacgaattctctgtcaatggctatataaagatattcgaaactaacactcccaatccaaaatgaaaaatcacccatctaataaataaaaacccccatcgtttggctttttttcataataagccAaaacggcttattaggaaataaaaataaatttgtaggtaaaacTtttatatatgcgttcttggtgatttaaaaaccaatgttgttaaagaaactacgttgaaaatatctcaaaatcaatcttaaaattaagtttaaaaattttaaatttggcttattcgttggctgttcggCccccaacttgcttaaaacggatcaaacgaaaacgaaatcagaaagagagatgaagcgaaacggaatacctgaacccgccgccactgccaggcgagccggcggcctctccggcgagccccatcaagcgcacctcgccgtcgtcctcctcctcctccgctccctgcgagagacaggagcagcacgggaacagcgacaacaaggcgagaaccaccaacgagccgaggaggagcacctcacgcatgcacgcgaacgacggaggaggaagaagaagaggatggcgatcgatccggggaacgc
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| CDS seq | atgcgtgaggtgctcctcctcggctcgttggtggttctcgccttgttgtcgctgttcccgtgctgctcctgtctctcgcagggagcggaggaggaggaggacgacggcgaggtgcgcttgatggggctcgccggagaggccgccggctcgcctggcagtggcggcgggttcagtgcaaatggtaaatttagctatggttatgcgagctctcctggaaaaagatcctccatggaggacttctatgacaccagaattgatggtgtcgatggagagaccgttggactgtttggtgtctttgatggtcatggtggagctcgagcagcagaattcgtcaagcagaacctcttcaccaatttaatcaagcacccaaagttattcagtgataccaagtctgcaattgctgaaacttacactagcacggactctgaacttctgaaagctgaaaccagccacaatcgagatgcagggtcgactgcctccactgcaattctcgtaggcgaccgtctgctcgttgcaaatgttggagattctagggctgtcatttgtagaggaggagatgctatagctgtgtcaagagaccacaagcctgatcagtcagacgagaggcagaggatagaggatgctggtggttttgtgatgtgggctggaacatggcgcgtgggtggtgttcttgctgtctctcgagcatttggtgacaaactcctgaagcaatatgtggttgctgatccagagatcaaggaggaggtggtcgacagctctctcgagttcctcatccttgctagtgatggcctctgggacgtggtgaccaacgaggaagctgtggccatggtgaagccaattctggattcagagcaggctgcaaagaagctcctccaggaggcctcacagaggggaagcgcagacaacatcacctgcctcgtcgtccgtttcttggagcaggagaatcacctgccagagagaccgacgaatgatcaagcctcctaa
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| Protein seq | MREVLLLGSLVVLALLSLFPCCSCLSQGAEEEEDDGEVRLMGLAGEAAGSPGSGGGFSANGKFSYGYASSPGKRSSMEDFYDTRIDGVDGETVGLFGVFDGHGGARAAEFVKQNLFTNLIKHPKLFSDTKSAIAETYTSTDSELLKAETSHNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGDAIAVSRDHKPDQSDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDKLLKQYVVADPEIKEEVVDSSLEFLILASDGLWDVVTNEEAVAMVKPILDSEQAAKKLLQEASQRGSADNITCLVVRFLEQENHLPERPTNDQAS |
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| Function | Probable protein phosphatase 2C 59 [UniProtKB/Swiss-Prot:Q5Z6F5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_06g0027590 | OsNaBo_06g0027590.02 | Chr06 | 30129928 | 30133073 | - | NAM | ||
| CDS seq | atgcgtgagggagcggaggaggaggaggacgacggcgaggtgcgcttgatggggctcgccggagaggccgccggctcgcctggcagtggcggcgggttcagtgcaaatggtaaatttagctatggttatgcgagctctcctggaaaaagatcctccatggaggacttctatgacaccagaattgatggtgtcgatggagagaccgttggactgtttggtgtctttgatggtcatggtggagctcgagcagcagaattcgtcaagcagaacctcttcaccaatttaatcaagcacccaaagttattcagtgataccaagtctgcaattgctgaaacttacactagcacggactctgaacttctgaaagctgaaaccagccacaatcgagatgcagggtcgactgcctccactgcaattctcgtaggcgaccgtctgctcgttgcaaatgttggagattctagggctgtcatttgtagaggaggagatgctatagctgtgtcaagagaccacaagcctgatcagtcagacgagaggcagaggatagaggatgctggtggttttgtgatgtgggctggaacatggcgcgtgggtggtgttcttgctgtctctcgagcatttggtgacaaactcctgaagcaatatgtggttgctgatccagagatcaaggaggaggtggtcgacagctctctcgagttcctcatccttgctagtgatggcctctgggacgtggtgaccaacgaggaagctgtggccatggtgaagccaattctggattcagagcaggctgcaaagaagctcctccaggaggcctcacagaggggaagcgcagacaacatcacctgcctcgtcgtccgtttcttggagcaggagaatcacctgccagagagaccgacgaatgatcaagcctcctaa
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| Protein seq | MREGAEEEEDDGEVRLMGLAGEAAGSPGSGGGFSANGKFSYGYASSPGKRSSMEDFYDTRIDGVDGETVGLFGVFDGHGGARAAEFVKQNLFTNLIKHPKLFSDTKSAIAETYTSTDSELLKAETSHNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGDAIAVSRDHKPDQSDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDKLLKQYVVADPEIKEEVVDSSLEFLILASDGLWDVVTNEEAVAMVKPILDSEQAAKKLLQEASQRGSADNITCLVVRFLEQENHLPERPTNDQAS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_06g0027590 | OsNaBo_06g0027590.01 | Chr06 | 30129928 | 30133073 | - | NAM | ||
| CDS seq | atgcgtgaggtgctcctcctcggctcgttggtggttctcgccttgttgtcgctgttcccgtgctgctcctgtctctcgcagggagcggaggaggaggaggacgacggcgaggtgcgcttgatggggctcgccggagaggccgccggctcgcctggcagtggcggcgggttcagtgcaaatggtaaatttagctatggttatgcgagctctcctggaaaaagatcctccatggaggacttctatgacaccagaattgatggtgtcgatggagagaccgttggactgtttggtgtctttgatggtcatggtggagctcgagcagcagaattcgtcaagcagaacctcttcaccaatttaatcaagcacccaaagttattcagtgataccaagtctgcaattgctgaaacttacactagcacggactctgaacttctgaaagctgaaaccagccacaatcgagatgcagggtcgactgcctccactgcaattctcgtaggcgaccgtctgctcgttgcaaatgttggagattctagggctgtcatttgtagaggaggagatgctatagctgtgtcaagagaccacaagcctgatcagtcagacgagaggcagaggatagaggatgctggtggttttgtgatgtgggctggaacatggcgcgtgggtggtgttcttgctgtctctcgagcatttggtgacaaactcctgaagcaatatgtggttgctgatccagagatcaaggaggaggtggtcgacagctctctcgagttcctcatccttgctagtgatggcctctgggacgtggtgaccaacgaggaagctgtggccatggtgaagccaattctggattcagagcaggctgcaaagaagctcctccaggaggcctcacagaggggaagcgcagacaacatcacctgcctcgtcgtccgtttcttggagcaggagaatcacctgccagagagaccgacgaatgatcaagcctcctaa
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| Protein seq | MREVLLLGSLVVLALLSLFPCCSCLSQGAEEEEDDGEVRLMGLAGEAAGSPGSGGGFSANGKFSYGYASSPGKRSSMEDFYDTRIDGVDGETVGLFGVFDGHGGARAAEFVKQNLFTNLIKHPKLFSDTKSAIAETYTSTDSELLKAETSHNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGDAIAVSRDHKPDQSDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDKLLKQYVVADPEIKEEVVDSSLEFLILASDGLWDVVTNEEAVAMVKPILDSEQAAKKLLQEASQRGSADNITCLVVRFLEQENHLPERPTNDQAS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr06 | 30132845 | 30133073 | - | OsNaBo_06g0027590.01 | OsNaBo_06g0027590.02,OsNaBo_06g0027590.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 5.566197 | 25.097916 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0698300 | RBH | 0.430075 | 0.000000 | 4.643367 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g48300 | RBH | 0.507330 | 0.488125 | 1.652760 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0698300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0027760 | RBH | 0.489574 | 1.778198 | 9.874964 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0027570 | RBH | 0.280795 | 0.000000 | 13.942386 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0027710 | RBH | 0.838132 | 0.000000 | 22.882132 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0027290 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0027790 | RBH | 3.959663 | 0.000000 | 38.770973 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0460200 | RBH | 1.2486485 | 1.81473 | 706.1402585 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0027180 | RBH | 0.114630 | 0.0 | 7.085644 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0443800 | RBH | 4.535929 | 2.955203 | 7.272341 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0027680 | RBH | 0.044128 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0027750 | RBH | 0.135366 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0027340 | RBH | 0.678942 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0027980 | RBH | 0.321403 | 0.000000 | 3.479337 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0027620 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G027510 | RBH | 0.231974 | 0.662270 | 5.898506 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0003730 | RBH | 3.185088 | 63.277115 | 27.204367 |
