Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_06g0027320 | OGI:06081540 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr06:29918561-29920786 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgaggccatcaggagcccaagaaagtattgggccagcacggtttcagcaatggatcctgcgccggcccaggacgcggtggagatgggccgtcaaggctcttctgtcttcctcctttgtcctcccgttgcgtcgtgctcccgcagcctcgcgagtcgcgacgcttttgccgccgcggccaccaaaaaccgcgcgttgccaaagccaatctaccgaacccgtctcctcgccatggcgccgccgccccgccgcctcacctcgccgccgtgacgccggcggcatggtgcgcctcatcccgcgactccacgccccaccgccgccgccgccgcgtgttccagccgggctgccgctccccctcctcccggccccggcgctcgccgcgaccctcctcgaggccgtctcctcctcaccctccctcccccacctccgccacctgcacgcgctcgccgtgcgcctgccgctcccggcgacctccctccccttcctcctctcccgcctcctccgccgcctcgccgcgctcccaccaccaccgcacgcgccgctgccgtacgcgctcaacgtcttctccgcggtctctccccccgaccccttcctcgcggcggcgctcctgcgcttcgcgttcctcacgcagcctccgttgctccccttccgcgtcttctcccacctccgccgcgctcacggcgcggagctcccgttcctcccgttcgctttctccacgctcgccaaatccgccacggcctcccgctctctccccactgccgcagccgcacacgcggtgtcggtcctcgtcggcgggtttgataggcaccggtttgttgagaactcgctgatcggtgcttatgttgcgtgtggtgatgtgggagctgcacgcaaggtgtttgatgaaatggtggagaaggatgtcatttcatggacaagtattgtggtcgcctataccagaagcggggatatgcgatcagcagaggaggtgtttgggcggtgccctgtgaaggatatggtggcttggacagcaatggtgactggctatgcgcagaatgccatgccagtgaaggcattagaagtgtttgatcgaatggcagaacttggcatggtcattgatgaggtttcattgacaggtgctatctcagcttgcgctcagcttggtgctttgagacgtgccgcttgggttcaggagattgcagagaggactggctttgggaataacgtagttgttgggtcagggttggtggatatgtatgccaagtgtgggctcattgatgaggcatccaaggttttttatgggatgcaggaaaagaatgtgtacacatatagctcaatgatcgctggtcttgcatcgcatgggagggctagcgaggcgattgctttattcaaggagatggtcaatagggcaaatgtggaaccaaaccatgttacctttattggggtactgacagcttgtagccatgcagggatggtgggagaaggtcggtactactttgcacagatgaaggacaagtatgggattatgccatctgcagatcattatgcctgcatggttgatttgcttggccgggctggattggtggatgaagcccttgatcttgttagatcaatgtccgtgacgcctcatggtggtgtatggggagcactgcttggagcttgccggattcatgggaagagtgaaattgctaaggttgtagctgaacatctttttaaactcgaaccagagagcataggaaactatgtgttattatcaaatatacttgcgtcagctggaaaatgggaagaagtgtcaaaggttaggatattgatgagaaagcagagactgaaaaaggatcctgctgttagcttgtttgaaggcagagatggtttggtccaccagttctttgctggtgataatgcccacccaaggacacatgaaataaagaaagcattgttggagttagtggcaaagctaaaacttgaaggttatgtacccattttgagttcaattgtttatgatgtgaacgatgaagagaaggaaaggctgttgatgggtcatagtgagaagcttgctttgtcgttcggtttgcttacgcttggatctggatgcacaattaggatcataaagaatctaaggatctgtgatgactgccatttgtttatgcggttagtatcgagagttgaatctgttgagattatagtcagggacaatatgagattccatcatttcaagaatggagaatgctcctgtggtggattctggtga
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| CDS seq | atgaggccatcaggagcccaagaaagtattgggccagcacggtttcagcaatggatcctgcgccggcccaggacgcggtggagatgggccgtcaaggctcttctgtcttcctcctttgtcctcccgttgcgtcgtgctcccgcagcctcgcgagtcgcgacgcttttgccgccgcggccaccaaaaaccgcgcgttgccaaagccaatctaccgaacccgtctcctcgccatggcgccgccgccccgccgcctcacctcgccgccgtgacgccggcggcatggtgcgcctcatcccgcgactccacgccccaccgccgccgccgccgcgtgttccagccgggctgccgctccccctcctcccggccccggcgctcgccgcgaccctcctcgaggccgtctcctcctcaccctccctcccccacctccgccacctgcacgcgctcgccgtgcgcctgccgctcccggcgacctccctccccttcctcctctcccgcctcctccgccgcctcgccgcgctcccaccaccaccgcacgcgccgctgccgtacgcgctcaacgtcttctccgcggtctctccccccgaccccttcctcgcggcggcgctcctgcgcttcgcgttcctcacgcagcctccgttgctccccttccgcgtcttctcccacctccgccgcgctcacggcgcggagctcccgttcctcccgttcgctttctccacgctcgccaaatccgccacggcctcccgctctctccccactgccgcagccgcacacgcggtgtcggtcctcgtcggcgggtttgataggcaccggtttgttgagaactcgctgatcggtgcttatgttgcgtgtggtgatgtgggagctgcacgcaaggtgtttgatgaaatggtggagaaggatgtcatttcatggacaagtattgtggtcgcctataccagaagcggggatatgcgatcagcagaggaggtgtttgggcggtgccctgtgaaggatatggtggcttggacagcaatggtgactggctatgcgcagaatgccatgccagtgaaggcattagaagtgtttgatcgaatggcagaacttggcatggtcattgatgaggtttcattgacaggtgctatctcagcttgcgctcagcttggtgctttgagacgtgccgcttgggttcaggagattgcagagaggactggctttgggaataacgtagttgttgggtcagggttggtggatatgtatgccaagtgtgggctcattgatgaggcatccaaggttttttatgggatgcaggaaaagaatgtgtacacatatagctcaatgatcgctggtcttgcatcgcatgggagggctagcgaggcgattgctttattcaaggagatggtcaatagggcaaatgtggaaccaaaccatgttacctttattggggtactgacagcttgtagccatgcagggatggtgggagaaggtcggtactactttgcacagatgaaggacaagtatgggattatgccatctgcagatcattatgcctgcatggttgatttgcttggccgggctggattggtggatgaagcccttgatcttgttagatcaatgtccgtgacgcctcatggtggtgtatggggagcactgcttggagcttgccggattcatgggaagagtgaaattgctaaggttgtagctgaacatctttttaaactcgaaccagagagcataggaaactatgtgttattatcaaatatacttgcgtcagctggaaaatgggaagaagtgtcaaaggttaggatattgatgagaaagcagagactgaaaaaggatcctgctgttagcttgtttgaaggcagagatggtttggtccaccagttctttgctggtgataatgcccacccaaggacacatgaaataaagaaagcattgttggagttagtggcaaagctaaaacttgaaggttatgtacccattttgagttcaattgtttatgatgtgaacgatgaagagaaggaaaggctgttgatgggtcatagtgagaagcttgctttgtcgttcggtttgcttacgcttggatctggatgcacaattaggatcataaagaatctaaggatctgtgatgactgccatttgtttatgcggttagtatcgagagttgaatctgttgagattatagtcagggacaatatgagattccatcatttcaagaatggagaatgctcctgtggtggattctggtga
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| Protein seq | MRPSGAQESIGPARFQQWILRRPRTRWRWAVKALLSSSFVLPLRRAPAASRVATLLPPRPPKTARCQSQSTEPVSSPWRRRPAASPRRRDAGGMVRLIPRLHAPPPPPPRVPAGLPLPLLPAPALAATLLEAVSSSPSLPHLRHLHALAVRLPLPATSLPFLLSRLLRRLAALPPPPHAPLPYALNVFSAVSPPDPFLAAALLRFAFLTQPPLLPFRVFSHLRRAHGAELPFLPFAFSTLAKSATASRSLPTAAAAHAVSVLVGGFDRHRFVENSLIGAYVACGDVGAARKVFDEMVEKDVISWTSIVVAYTRSGDMRSAEEVFGRCPVKDMVAWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALRRAAWVQEIAERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLASHGRASEAIALFKEMVNRANVEPNHVTFIGVLTACSHAGMVGEGRYYFAQMKDKYGIMPSADHYACMVDLLGRAGLVDEALDLVRSMSVTPHGGVWGALLGACRIHGKSEIAKVVAEHLFKLEPESIGNYVLLSNILASAGKWEEVSKVRILMRKQRLKKDPAVSLFEGRDGLVHQFFAGDNAHPRTHEIKKALLELVAKLKLEGYVPILSSIVYDVNDEEKERLLMGHSEKLALSFGLLTLGSGCTIRIIKNLRICDDCHLFMRLVSRVESVEIIVRDNMRFHHFKNGECSCGGFW |
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| Function | Pentatricopeptide repeat-containing protein At5g44230 [UniProtKB/Swiss-Prot:Q9FFG8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_06g0027320 | OsNaBo_06g0027320.01 | Chr06 | 29918561 | 29920786 | + | NAM | ||
| CDS seq | atgaggccatcaggagcccaagaaagtattgggccagcacggtttcagcaatggatcctgcgccggcccaggacgcggtggagatgggccgtcaaggctcttctgtcttcctcctttgtcctcccgttgcgtcgtgctcccgcagcctcgcgagtcgcgacgcttttgccgccgcggccaccaaaaaccgcgcgttgccaaagccaatctaccgaacccgtctcctcgccatggcgccgccgccccgccgcctcacctcgccgccgtgacgccggcggcatggtgcgcctcatcccgcgactccacgccccaccgccgccgccgccgcgtgttccagccgggctgccgctccccctcctcccggccccggcgctcgccgcgaccctcctcgaggccgtctcctcctcaccctccctcccccacctccgccacctgcacgcgctcgccgtgcgcctgccgctcccggcgacctccctccccttcctcctctcccgcctcctccgccgcctcgccgcgctcccaccaccaccgcacgcgccgctgccgtacgcgctcaacgtcttctccgcggtctctccccccgaccccttcctcgcggcggcgctcctgcgcttcgcgttcctcacgcagcctccgttgctccccttccgcgtcttctcccacctccgccgcgctcacggcgcggagctcccgttcctcccgttcgctttctccacgctcgccaaatccgccacggcctcccgctctctccccactgccgcagccgcacacgcggtgtcggtcctcgtcggcgggtttgataggcaccggtttgttgagaactcgctgatcggtgcttatgttgcgtgtggtgatgtgggagctgcacgcaaggtgtttgatgaaatggtggagaaggatgtcatttcatggacaagtattgtggtcgcctataccagaagcggggatatgcgatcagcagaggaggtgtttgggcggtgccctgtgaaggatatggtggcttggacagcaatggtgactggctatgcgcagaatgccatgccagtgaaggcattagaagtgtttgatcgaatggcagaacttggcatggtcattgatgaggtttcattgacaggtgctatctcagcttgcgctcagcttggtgctttgagacgtgccgcttgggttcaggagattgcagagaggactggctttgggaataacgtagttgttgggtcagggttggtggatatgtatgccaagtgtgggctcattgatgaggcatccaaggttttttatgggatgcaggaaaagaatgtgtacacatatagctcaatgatcgctggtcttgcatcgcatgggagggctagcgaggcgattgctttattcaaggagatggtcaatagggcaaatgtggaaccaaaccatgttacctttattggggtactgacagcttgtagccatgcagggatggtgggagaaggtcggtactactttgcacagatgaaggacaagtatgggattatgccatctgcagatcattatgcctgcatggttgatttgcttggccgggctggattggtggatgaagcccttgatcttgttagatcaatgtccgtgacgcctcatggtggtgtatggggagcactgcttggagcttgccggattcatgggaagagtgaaattgctaaggttgtagctgaacatctttttaaactcgaaccagagagcataggaaactatgtgttattatcaaatatacttgcgtcagctggaaaatgggaagaagtgtcaaaggttaggatattgatgagaaagcagagactgaaaaaggatcctgctgttagcttgtttgaaggcagagatggtttggtccaccagttctttgctggtgataatgcccacccaaggacacatgaaataaagaaagcattgttggagttagtggcaaagctaaaacttgaaggttatgtacccattttgagttcaattgtttatgatgtgaacgatgaagagaaggaaaggctgttgatgggtcatagtgagaagcttgctttgtcgttcggtttgcttacgcttggatctggatgcacaattaggatcataaagaatctaaggatctgtgatgactgccatttgtttatgcggttagtatcgagagttgaatctgttgagattatagtcagggacaatatgagattccatcatttcaagaatggagaatgctcctgtggtggattctggtga
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| Protein seq | MRPSGAQESIGPARFQQWILRRPRTRWRWAVKALLSSSFVLPLRRAPAASRVATLLPPRPPKTARCQSQSTEPVSSPWRRRPAASPRRRDAGGMVRLIPRLHAPPPPPPRVPAGLPLPLLPAPALAATLLEAVSSSPSLPHLRHLHALAVRLPLPATSLPFLLSRLLRRLAALPPPPHAPLPYALNVFSAVSPPDPFLAAALLRFAFLTQPPLLPFRVFSHLRRAHGAELPFLPFAFSTLAKSATASRSLPTAAAAHAVSVLVGGFDRHRFVENSLIGAYVACGDVGAARKVFDEMVEKDVISWTSIVVAYTRSGDMRSAEEVFGRCPVKDMVAWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALRRAAWVQEIAERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLASHGRASEAIALFKEMVNRANVEPNHVTFIGVLTACSHAGMVGEGRYYFAQMKDKYGIMPSADHYACMVDLLGRAGLVDEALDLVRSMSVTPHGGVWGALLGACRIHGKSEIAKVVAEHLFKLEPESIGNYVLLSNILASAGKWEEVSKVRILMRKQRLKKDPAVSLFEGRDGLVHQFFAGDNAHPRTHEIKKALLELVAKLKLEGYVPILSSIVYDVNDEEKERLLMGHSEKLALSFGLLTLGSGCTIRIIKNLRICDDCHLFMRLVSRVESVEIIVRDNMRFHHFKNGECSCGGFW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.426997 | 1.740573 | 1.232976 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0694300 | RBH | 1.811870 | 1.439865 | 0.804200 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g47920 | RBH | 1.314445 | 1.038902 | 0.222081 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0694300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0027500 | RBH | 0.264509 | 0.0 | 1.138692 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0027300 | RBH | 0.210971 | 0.0 | 0.593707 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0027440 | RBH | 0.0 | 0.0 | 2.581462 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0027010 | RBH | 0.096110 | 0.026499 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0027520 | RBH | 1.069405 | 0.000000 | 2.176887 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0456900 | RBH | 1.218808 | 1.7789925 | 0.541898 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0026910 | RBH | 0.151843 | 0.0 | 0.179481 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0439400 | RBH | 1.734288 | 2.546011 | 3.462472 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0027410 | RBH | 0.037217 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0027480 | RBH | 0.040971 | 1.357156 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0027070 | RBH | 2.116562 | 8.509766 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0027700 | RBH | 0.082805 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0027310 | RBH | 0.138922 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G027240 | RBH | 0.176082 | 1.398472 | 0.162048 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0003840 | SBH | 0.162812 | 1.354247 | 1.600036 |
