Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_06g0026390 | OGI:06079830 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr06:29295857-29300849 | ||||||||
| Gene Symbol | PRX89, prx89, OsPRX89 | ||||||||||
| DNA seq | atcactgtatttctcactgtctctctctatatatagccgagtgcactgccactcagagattgtcagagaaagcagctttgagcttagctatggcaatggccgcgccgctgacgttggtggtggtggcggcggcggtggccgtcgtcttcgtcggcggcggcgtggaggggtgggtgctcaaggaggggttctacgagcagagctgcccgcgcgcggaggcgctggtgaagcactacgtggagcagcacgtccccctcgccccctccgtcgccgccaccctcatccgcacccacttccacgactgcttcgtcagggtaagcgcgtatagctcgtcgatcgatcggcgtggcgcggcggcggaattctgacggcggcgacggcggccatggcgtggtggttttgaattgtaggggtgcgacgcgtcggtgttgctgaacgggacggacggggcggaggcggagaaggacgcggcgccgaacctgacgctgcgggggttcgccttcatcgaccgcatcaagagcgtggtcgagagcgagtgccccggcgtcgtctcctgcgccgacatcctcgcgctcgccacccgcgacgccatctccgtcatcgtaagctagcacctcgctcctcctcctcctcctctcccgcatttgcgatggccggcgagctggctgacggcgagcgagcagggcgggccgttctggcgggtggcgacggggcggcgcgacgggagggtgtcgatcaagcaggaggcgctggaccagatcccggcgccgaccatgaacttcaccgacctcctctcctccttccagagcaagggcctcgacctcgccgacctcatctggttgtcaggtaaactaactattcactcttccatatattaatttcagtattaatttcaccatccatttcagagttcagacttcaccatcaatagtatttccttcgttccaaaacaactataagtttccgcgcccaactttaatcgtccatcttatttaaaaTttttttataattagtatttttgttattataagatgataaaacatgaataatattttactcgtaacttatgtttttaatttttttcaaaaaaaaattcaaataagacggacggtcaaagttgaacgcggaaaaccatggctgtacttaaaatgggacggagggagtaaacatttttagactttgacatagtctttgagatggtattttgatcaacaatatctataaaagtgagatgttttaaataaaaaaaagttgtaatagtttgttaatgataagtctagtaacatcaattttacatgattgatttttttttatttttttactattaatagttaaaattaaaaatgtttgacttgacactattctaaaattgcttatattttgaaaattagttgcggtcgatcaaaaccccagtttcagcttatgacagcatcgtttctgaaaagaaaagtaaaaccattcacctaagctaatgattggttaacttgacacaaacggcagccaaagatcgattttcacgttatatcctaattaagtcgattgattactagtcttcaggatacacaactcgatcaggtttggtgttttatctagcttgatgtatctagctatgtggtgtttgcaattgcgtagtacaagccaccgacaaatagtgaattggtgatgtgatatcgtgctgcaaaatctgcaatatgcagagaacgatagttaacttttgcaaattctttgtgtgttgagtcggcaactaggacacgctctcactctcactcacatcacaccccagtaatgctgtccccaaagattcagaagatgaaagatatatagcctcaatcacaccgatttccatgtagtaacaatactaacaaacaacgatcctaataggaacactacagatgccgaatttctatccattatctaaaaaactctcgtgccacgacaatccagaattgaacagacagctacgtccaacagggagggttggatctacttaattcatagaaggccaaagcttagctgaatcttgttcacgggtatcgcatcaaatcaaagttaaaaacagtttagtaggtatagcgatctaaccaacagataacgaggcttttagttgacggctggcaagtctgttccgtgcaataaaatgcaattcataacactgcactacaacaaatatatcttatagagacattttcatttttctaatactatagaggcatttttaaaatgactttacagtattatagagatattttgaagagtgtctcataagtatcttttggtgaattgtctctacgaactaaaaggtgaattgtctctacgaactaagaggacattttgaagagtgtctcataagtgccttttggtgaattgtctctacgaactaagaggcattttataagatgtctctatgcaaactaagaggcattttataagatgtctctatgcaaatagaggcactttgtaaaggcattaaccatctcaacctcatataattatatgtaagtatgtgatttgtgttacttatatctagttacttgatatatatattaatatttgaaaaaatgcctttacatcattttaaatgccttaagaaaatgcatttacatatgaggcaaattttaaagtgctgaaaatgtgtctctacaagataaacttaacaaagtatactaaaaatgtctctagagtaaaaatattttagacgattttgaaagtgcctctaaaaagtgtctctaaactatagagcttcaaaacttacagtcattttaaaaattgtctctacaaaagagcctttatataagatttttgatgtagtgctgttttatttagagagtgtagcacagatattgacacgctaactgaccaagatttttattaacgttagtggttaaaggtgtgcaaaaaatgccaagacaaacattcagctcttgtactgtcctgtatctgtacttgtgagttagtagcaaattagtagctagctagattctataaaaggggggaagtgatgcagcttatataagggagaaacgtgatgtaactggcctcctacttctctgagagagtgactatttactaatccttaatttgaaagatcaagaaatgatttacattgtatttattcaatgtgtaaaagctgaaataataatatatacatacacgtcaagtgcagagggcatgcatatgcctactagctagtagtttgcgtcattgattctcaaaattttcatacaaatataacccctccgtctcacatcgatcccttcaaaattcaaaatccttatattatgggatggatggagtagatagatactatgtggtaccagtgagcaatgatcagttgtgatgtagacatgcatctgcatgccacagctaattacaccctcgtgttgatgtagtcacgtagatgtcagcgttaaatggatgttttgatgttttctgaagttgtagtatagtactccgtagtaggtctaacgttgcattcttaattaacactgcatacatatcacttaagatattcctagcttagctaccgtccacatacttgaggttcctagctagatgacaatactacgtgcaagccattgcaggagctgaatatcttgtagtacttgcgcatagttgcatggtccagaaaaacagatatccagtacatctctcgttttctcccattaattgcagagtactgggtatctgatcagttaatgaaatccgcaaactgctgaacaaccatctacctgtagatttcaattgaggatttggactaagataatatacaaatggtttttaggtacaaacttcagagaaactgcacttgcactggttttctatgaaattcaaccactaagttttgtcaccgaaccatttgaaatgggttattcattggattattgtcatataaggataaactaaatacttttagaaataagcttacttaacaaaataacaaatactatgctgagtgaagaagtatagtgctgtagaataagtagtttagaagcaatatcatagAaaaaaaagtttttcgagaaaacatttctttttagacgtggagtaaataatctaatatagtaattgaaaagcacactcttcgtttttttattgaataacactgttcacttttaaacatatattttatcattcatttattAaaaaaatttatgtaaatgtataagatataaatcatgcttaaaatactttaagtgataaaacaactaacaacaaaataaattataattacgtaaatttttaaaaagataaatggtcaaacatgtgataaaaaacgatcgaaggtagtagatgcttttaatttacttctgaactcactaattgagttgatgggtgcaggggcgcacacgatcggcatcgcgcactgcaactcgttcagcaagcggctgtacaacttcaccgggaagggcggccccggcgacgcggacccgtcgctggacgcggagtacgcggcgaacctgcggcggagcaagtgcgcggcgccgtcggacaacacgacgatcgtggagatggacccgggcagcttcctcaccttcgacctgggctactaccgcggcctcctcaggcgccgcggcctcttccagtccgacgccgccctcgtcaccgacgccgccgcggaggccaacatcgccagcgtggtgtccagcccgccggaggtgttcttccaggtgttcgcgaggtccatggcgaagctgggcatggtcggcgtcaagaccggctccgagggcgagatcaggaagcactgcgccctcgtcaacgacatccactactagtattatcactagctcatcgatcttcagctcctgggtgcttgataaaatttcagtagaaatatatatacatgtaacttaattcgatcgtcatcctgtttattctctctctctctctctgtaattttgtttccaaattgtaactgttttattttggagcaactgtaactatttctgtatgtgcccatgaatatatttcaattatagaaaataattcacttttt
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| CDS seq | atgaacttcaccgacctcctctcctccttccagagcaagggcctcgacctcgccgacctcatctggttcaagcggctgtacaacttcaccgggaagggcggccccggcgacgcggacccgtcgctggacgcggagtacgcggcgaacctgcggcggagcaagtgcgcggcgccgtcggacaacacgacgatcgtggagatggacccgggcagcttcctcaccttcgacctgggctactaccgcggcctcctcaggcgccgcggcctcttccagtccgacgccgccctcgtcaccgacgccgccgcggaggccaacatcgccagcgtggtgtccagcccgccggaggtgttcttccaggtgttcgcgaggtccatggcgaagctgggcatggtcggcgtcaagaccggctccgagggcgagatcaggaagcactgcgccctcgtcaacgacatccactactag
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| Protein seq | MNFTDLLSSFQSKGLDLADLIWFKRLYNFTGKGGPGDADPSLDAEYAANLRRSKCAAPSDNTTIVEMDPGSFLTFDLGYYRGLLRRRGLFQSDAALVTDAAAEANIASVVSSPPEVFFQVFARSMAKLGMVGVKTGSEGEIRKHCALVNDIHY |
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| Function | Peroxidase 3 [UniProtKB/Swiss-Prot:O23044] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_06g0026390 | OsNaBo_06g0026390.01 | Chr06 | 29295961 | 29300628 | + | NAM | ||
| CDS seq | atgaacttcaccgacctcctctcctccttccagagcaagggcctcgacctcgccgacctcatctggttcaagcggctgtacaacttcaccgggaagggcggccccggcgacgcggacccgtcgctggacgcggagtacgcggcgaacctgcggcggagcaagtgcgcggcgccgtcggacaacacgacgatcgtggagatggacccgggcagcttcctcaccttcgacctgggctactaccgcggcctcctcaggcgccgcggcctcttccagtccgacgccgccctcgtcaccgacgccgccgcggaggccaacatcgccagcgtggtgtccagcccgccggaggtgttcttccaggtgttcgcgaggtccatggcgaagctgggcatggtcggcgtcaagaccggctccgagggcgagatcaggaagcactgcgccctcgtcaacgacatccactactag
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| Protein seq | MNFTDLLSSFQSKGLDLADLIWFKRLYNFTGKGGPGDADPSLDAEYAANLRRSKCAAPSDNTTIVEMDPGSFLTFDLGYYRGLLRRRGLFQSDAALVTDAAAEANIASVVSSPPEVFFQVFARSMAKLGMVGVKTGSEGEIRKHCALVNDIHY |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_06g0026390 | OsNaBo_06g0026390.02 | Chr06 | 29295857 | 29300849 | + | IsoSeq | ||
| CDS seq | atcactgtatttctcactgtctctctctat |
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| Protein seq | ITVFLTVSLY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr06 | 29296170 | 29296540 | + | OsNaBo_06g0026390.02 | OsNaBo_06g0026390.01,OsNaBo_06g0026390.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 35.590981 | 8.961244 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0681600 | RBH | 0.718276 | 1.171805 | 0.659372 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g46799 | RBH | 0.309003 | 0.378707 | 0.115147 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0681600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0026520 | RBH | 0.0 | 5.323803 | 19.351326 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0026340 | RBH | 0.303461 | 15.982206 | 2.506313 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0026520 | RBH | 0.330570 | 61.793648 | 13.763442 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0026140 | RBH | 0.000000 | 3.102108 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0026620 | RBH | 0.0 | 81.726784 | 20.704393 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0445700 | RBH | 24.581543 | 2.4152805 | 3.505936 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0013910 | SBH | 0.0 | 0.941486 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0427700 | RBH | 15.4616685 | 0.240679 | 0.600743 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0026470 | RBH | 0.119892 | 0.481033 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0026570 | RBH | 0.138461 | 9.041717 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0026190 | RBH | 0.0 | 52.855225 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0026830 | RBH | 0.978916 | 3.017502 | 2.827859 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0026440 | RBH | 0.734624 | 35.840118 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G026330 | RBH | 0.0 | 27.699587 | 1.976309 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0004710 | RBH | 0.0 | 0.0 | 0.588946 |
